Published in Mol Cell on January 27, 2012
The RNA polymerase II CTD coordinates transcription and RNA processing. Genes Dev (2012) 2.55
THZ1 Reveals Roles for Cdk7 in Co-transcriptional Capping and Pausing. Mol Cell (2015) 1.56
Threonine-4 of mammalian RNA polymerase II CTD is targeted by Polo-like kinase 3 and required for transcriptional elongation. EMBO J (2012) 1.55
Serine-7 but not serine-5 phosphorylation primes RNA polymerase II CTD for P-TEFb recognition. Nat Commun (2012) 1.49
RNA polymerase II C-terminal domain: Tethering transcription to transcript and template. Chem Rev (2013) 1.35
The many roles of the conserved eukaryotic Paf1 complex in regulating transcription, histone modifications, and disease states. Biochim Biophys Acta (2012) 1.32
Direct Analysis of Phosphorylation Sites on the Rpb1 C-Terminal Domain of RNA Polymerase II. Mol Cell (2016) 1.23
The structure and substrate specificity of human Cdk12/Cyclin K. Nat Commun (2014) 1.10
TFIIH phosphorylation of the Pol II CTD stimulates mediator dissociation from the preinitiation complex and promoter escape. Mol Cell (2014) 1.07
3' end formation of pre-mRNA and phosphorylation of Ser2 on the RNA polymerase II CTD are reciprocally coupled in human cells. Genes Dev (2014) 1.05
Kin28 regulates the transient association of Mediator with core promoters. Nat Struct Mol Biol (2014) 1.04
Cyclin K goes with Cdk12 and Cdk13. Cell Div (2012) 1.03
Serine phosphorylation and proline isomerization in RNAP II CTD control recruitment of Nrd1. Genes Dev (2012) 1.00
Punctuation and syntax of the RNA polymerase II CTD code in fission yeast. Proc Natl Acad Sci U S A (2012) 1.00
Pol II CTD kinases Bur1 and Kin28 promote Spt5 CTR-independent recruitment of Paf1 complex. EMBO J (2012) 0.98
Basic mechanisms of RNA polymerase II activity and alteration of gene expression in Saccharomyces cerevisiae. Biochim Biophys Acta (2012) 0.98
Cross-talk among RNA polymerase II kinases modulates C-terminal domain phosphorylation. J Biol Chem (2012) 0.97
Function and control of RNA polymerase II C-terminal domain phosphorylation in vertebrate transcription and RNA processing. Mol Cell Biol (2014) 0.96
The RNA exosome promotes transcription termination of backtracked RNA polymerase II. Nat Struct Mol Biol (2014) 0.96
RNA polymerase II transcription elongation and Pol II CTD Ser2 phosphorylation: A tail of two kinases. Nucleus (2014) 0.94
PNUTS/PP1 regulates RNAPII-mediated gene expression and is necessary for developmental growth. PLoS Genet (2013) 0.91
RPRD1A and RPRD1B are human RNA polymerase II C-terminal domain scaffolds for Ser5 dephosphorylation. Nat Struct Mol Biol (2014) 0.90
An unexpected binding mode for a Pol II CTD peptide phosphorylated at Ser7 in the active site of the CTD phosphatase Ssu72. Genes Dev (2012) 0.90
Drug experience epigenetically primes Fosb gene inducibility in rat nucleus accumbens. J Neurosci (2012) 0.90
H2B ubiquitylation promotes RNA Pol II processivity via PAF1 and pTEFb. Mol Cell (2014) 0.90
Human snRNA genes use polyadenylation factors to promote efficient transcription termination. Nucleic Acids Res (2013) 0.88
RNA polymerase II termination involves C-terminal-domain tyrosine dephosphorylation by CPF subunit Glc7. Nat Struct Mol Biol (2014) 0.87
Mediator, TATA-binding protein, and RNA polymerase II contribute to low histone occupancy at active gene promoters in yeast. J Biol Chem (2014) 0.86
Human cytomegalovirus pUL79 is an elongation factor of RNA polymerase II for viral gene transcription. PLoS Pathog (2014) 0.86
novel modifications on C-terminal domain of RNA polymerase II can fine-tune the phosphatase activity of Ssu72. ACS Chem Biol (2013) 0.86
Set2 mediated H3 lysine 36 methylation: regulation of transcription elongation and implications in organismal development. Wiley Interdiscip Rev Dev Biol (2013) 0.86
Position-specific binding of FUS to nascent RNA regulates mRNA length. Genes Dev (2015) 0.85
Prolyl isomerases in gene transcription. Biochim Biophys Acta (2014) 0.85
The RNA polymerase II C-terminal domain-interacting domain of yeast Nrd1 contributes to the choice of termination pathway and couples to RNA processing by the nuclear exosome. J Biol Chem (2013) 0.85
Vps factors are required for efficient transcription elongation in budding yeast. Genetics (2013) 0.84
Structure and function of pre-mRNA 5'-end capping quality control and 3'-end processing. Biochemistry (2014) 0.84
Threonine-4 of the budding yeast RNAP II CTD couples transcription with Htz1-mediated chromatin remodeling. Proc Natl Acad Sci U S A (2014) 0.84
The Histone Chaperones FACT and Spt6 Restrict H2A.Z from Intragenic Locations. Mol Cell (2015) 0.84
The Ess1 prolyl isomerase: traffic cop of the RNA polymerase II transcription cycle. Biochim Biophys Acta (2014) 0.84
The C-terminal domain of Rpb1 functions on other RNA polymerase II subunits. Mol Cell (2013) 0.83
VAP: a versatile aggregate profiler for efficient genome-wide data representation and discovery. Nucleic Acids Res (2014) 0.83
Distinct requirement of RNA polymerase II CTD phosphorylations in budding and fission yeast. Transcription (2012) 0.83
Multiple roles for the Ess1 prolyl isomerase in the RNA polymerase II transcription cycle. Mol Cell Biol (2012) 0.83
High-throughput genetic and gene expression analysis of the RNAPII-CTD reveals unexpected connections to SRB10/CDK8. PLoS Genet (2013) 0.83
The Ssu72 phosphatase mediates the RNA polymerase II initiation-elongation transition. J Biol Chem (2014) 0.82
Modulation of RNA polymerase II phosphorylation downstream of pathogen perception orchestrates plant immunity. Cell Host Microbe (2014) 0.82
Functional interaction of Rpb1 and Spt5 C-terminal domains in co-transcriptional histone modification. Nucleic Acids Res (2015) 0.82
The interactome of the atypical phosphatase Rtr1 in Saccharomyces cerevisiae. Mol Biosyst (2014) 0.81
Annotation of genomics data using bidirectional hidden Markov models unveils variations in Pol II transcription cycle. Mol Syst Biol (2014) 0.81
In vivo putative O-GlcNAcylation of human SCP1 and evidence for possible role of its N-terminal disordered structure. BMB Rep (2014) 0.81
Inference of interactions between chromatin modifiers and histone modifications: from ChIP-Seq data to chromatin-signaling. Nucleic Acids Res (2014) 0.81
Histone H3K36 trimethylation is essential for multiple silencing mechanisms in fission yeast. Nucleic Acids Res (2016) 0.81
Co-transcriptional recruitment of Puf6 by She2 couples translational repression to mRNA localization. Nucleic Acids Res (2014) 0.81
Gene looping facilitates TFIIH kinase-mediated termination of transcription. Sci Rep (2015) 0.80
Engineered Covalent Inactivation of TFIIH-Kinase Reveals an Elongation Checkpoint and Results in Widespread mRNA Stabilization. Mol Cell (2016) 0.80
The RSC complex localizes to coding sequences to regulate Pol II and histone occupancy. Mol Cell (2014) 0.80
A systematic study of nuclear interactome of C-terminal domain small phosphatase-like 2 using inducible expression system and shotgun proteomics. BMB Rep (2016) 0.80
Nuclear export of messenger RNA. Genes (Basel) (2015) 0.80
The pol II CTD: new twists in the tail. Nat Struct Mol Biol (2016) 0.79
Chromatin Dynamics and the RNA Exosome Function in Concert to Regulate Transcriptional Homeostasis. Cell Rep (2015) 0.79
Pcf11 orchestrates transcription termination pathways in yeast. Genes Dev (2015) 0.79
RNA polymerase II CTD phospho-sites Ser5 and Ser7 govern phosphate homeostasis in fission yeast. RNA (2015) 0.79
Histone deacetylases and phosphorylated polymerase II C-terminal domain recruit Spt6 for cotranscriptional histone reassembly. Mol Cell Biol (2014) 0.79
Genome-wide analysis in Plasmodium falciparum reveals early and late phases of RNA polymerase II occupancy during the infectious cycle. BMC Genomics (2014) 0.79
Chromatin modification by the RNA Polymerase II elongation complex. Transcription (2015) 0.78
Roles of Prolyl Isomerases in RNA-Mediated Gene Expression. Biomolecules (2015) 0.78
A rule-based kinetic model of RNA polymerase II C-terminal domain phosphorylation. J R Soc Interface (2013) 0.78
Promoter nucleosome dynamics regulated by signalling through the CTD code. Elife (2015) 0.78
Rat1p maintains RNA polymerase II CTD phosphorylation balance. RNA (2014) 0.78
Proteomics studies of the interactome of RNA polymerase II C-terminal repeated domain. BMC Res Notes (2015) 0.77
Rpb4/7 facilitates RNA polymerase II CTD dephosphorylation. Nucleic Acids Res (2014) 0.77
Chemical Tools To Decipher Regulation of Phosphatases by Proline Isomerization on Eukaryotic RNA Polymerase II. ACS Chem Biol (2015) 0.77
Recruitment of Saccharomyces cerevisiae Cmr1/Ydl156w to Coding Regions Promotes Transcription Genome Wide. PLoS One (2016) 0.77
Regulation of Transcription Elongation by the XPG-TFIIH Complex Is Implicated in Cockayne Syndrome. Mol Cell Biol (2015) 0.77
The RNAPII-CTD Maintains Genome Integrity through Inhibition of Retrotransposon Gene Expression and Transposition. PLoS Genet (2015) 0.77
Phosphatase Rtr1 Regulates Global Levels of Serine 5 RNA Polymerase II C-Terminal Domain Phosphorylation and Cotranscriptional Histone Methylation. Mol Cell Biol (2016) 0.76
Role of Ser7 phosphorylation of the CTD during transcription of snRNA genes. RNA Biol (2012) 0.76
Genome-wide profiling of RNA polymerase transcription at nucleotide resolution in human cells with native elongating transcript sequencing. Nat Protoc (2016) 0.76
Promoter-Terminator Gene Loops Affect Alternative 3'-End Processing in Yeast. J Biol Chem (2016) 0.76
Context-dependent modulation of Pol II CTD phosphatase SSUP-72 regulates alternative polyadenylation in neuronal development. Genes Dev (2015) 0.76
Vertebrate Ssu72 regulates and coordinates 3'-end formation of RNAs transcribed by RNA polymerase II. PLoS One (2014) 0.76
Cross-talk of phosphorylation and prolyl isomerization of the C-terminal domain of RNA Polymerase II. Molecules (2014) 0.76
Investigating transcription reinitiation through in vitro approaches. Transcription (2014) 0.76
Dephosphorylating eukaryotic RNA polymerase II. Biochim Biophys Acta (2016) 0.76
On the computational ability of the RNA polymerase II carboxy terminal domain. Commun Integr Biol (2014) 0.75
Regulation of the human papillomavirus type 16 late promoter by transcriptional elongation. Virology (2017) 0.75
Stress induces changes in the phosphorylation of Trypanosoma cruzi RNA polymerase II, affecting its association with chromatin and RNA processing. Eukaryot Cell (2014) 0.75
A Conserved Nuclear Cyclophilin Is Required for Both RNA Polymerase II Elongation and Co-transcriptional Splicing in Caenorhabditis elegans. PLoS Genet (2016) 0.75
Sub1/PC4, a multifaceted factor: from transcription to genome stability. Curr Genet (2017) 0.75
Transcriptomes of six mutants in the Sen1 pathway reveal combinatorial control of transcription termination across the Saccharomyces cerevisiae genome. PLoS Genet (2017) 0.75
Transcriptional regulatory networks in Saccharomyces cerevisiae. Science (2002) 43.52
Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity. Mol Cell (2003) 11.78
Computational discovery of gene modules and regulatory networks. Nat Biotechnol (2003) 6.55
Variant histone H2A.Z is globally localized to the promoters of inactive yeast genes and regulates nucleosome positioning. PLoS Biol (2005) 4.48
Genome-wide computational prediction of transcriptional regulatory modules reveals new insights into human gene expression. Genome Res (2006) 4.32
From the Cover: Location analysis of estrogen receptor alpha target promoters reveals that FOXA1 defines a domain of the estrogen response. Proc Natl Acad Sci U S A (2005) 4.16
Genome-wide location and regulated recruitment of the RSC nucleosome-remodeling complex. Genes Dev (2002) 3.93
Genome-wide replication-independent histone H3 exchange occurs predominantly at promoters and implicates H3 K56 acetylation and Asf1. Mol Cell (2007) 3.60
Organics captured from comet 81P/Wild 2 by the Stardust spacecraft. Science (2006) 2.51
LARP7 is a stable component of the 7SK snRNP while P-TEFb, HEXIM1 and hnRNP A1 are reversibly associated. Nucleic Acids Res (2008) 2.38
PReMod: a database of genome-wide mammalian cis-regulatory module predictions. Nucleic Acids Res (2006) 2.27
Systematic identification of fragile sites via genome-wide location analysis of gamma-H2AX. Nat Struct Mol Biol (2010) 1.87
Comet 81P/Wild 2 under a microscope. Science (2006) 1.83
Histone H2A.Z is essential for estrogen receptor signaling. Genes Dev (2009) 1.58
Genomewide location analysis of Candida albicans Upc2p, a regulator of sterol metabolism and azole drug resistance. Eukaryot Cell (2008) 1.56
The euchromatic and heterochromatic landscapes are shaped by antagonizing effects of transcription on H2A.Z deposition. PLoS Genet (2009) 1.52
DSIF and RNA polymerase II CTD phosphorylation coordinate the recruitment of Rpd3S to actively transcribed genes. PLoS Genet (2010) 1.47
Oxidative stress-activated zinc cluster protein Stb5 has dual activator/repressor functions required for pentose phosphate pathway regulation and NADPH production. Mol Cell Biol (2006) 1.46
Transcriptional regulation of nonfermentable carbon utilization in budding yeast. FEMS Yeast Res (2009) 1.39
Mineralogy and petrology of comet 81P/Wild 2 nucleus samples. Science (2006) 1.36
Bicoid cooperative DNA binding is critical for embryonic patterning in Drosophila. Proc Natl Acad Sci U S A (2005) 1.36
The Ess1 prolyl isomerase is required for transcription termination of small noncoding RNAs via the Nrd1 pathway. Mol Cell (2009) 1.35
Whole-genome reconstruction and mutational signatures in gastric cancer. Genome Biol (2012) 1.33
The protein interaction network of the human transcription machinery reveals a role for the conserved GTPase RPAP4/GPN1 and microtubule assembly in nuclear import and biogenesis of RNA polymerase II. Mol Cell Proteomics (2010) 1.23
Isotopic compositions of cometary matter returned by Stardust. Science (2006) 1.20
Isotope ratios of H, C, and O in CO2 and H2O of the martian atmosphere. Science (2013) 1.15
The Drosophila calcipressin sarah is required for several aspects of egg activation. Curr Biol (2006) 1.15
Antioxidants to reduce sperm DNA fragmentation: an unexpected adverse effect. Reprod Biomed Online (2007) 1.14
The ESS1 prolyl isomerase and its suppressor BYE1 interact with RNA pol II to inhibit transcription elongation in Saccharomyces cerevisiae. Genetics (2003) 1.12
Dynamic deposition of histone variant H3.3 accompanies developmental remodeling of the Arabidopsis transcriptome. PLoS Genet (2012) 1.11
Prolyl isomerases in yeast. Front Biosci (2004) 1.10
Effects of AGI-1067 and probucol after percutaneous coronary interventions. Circulation (2003) 1.09
Yeast RNase III triggers polyadenylation-independent transcription termination. Mol Cell (2009) 1.08
Genome-wide location analysis and expression studies reveal a role for p110 CUX1 in the activation of DNA replication genes. Nucleic Acids Res (2007) 1.06
Genomic location of the human RNA polymerase II general machinery: evidence for a role of TFIIF and Rpb7 at both early and late stages of transcription. Biochem J (2008) 1.03
Control of chromatin structure by spt6: different consequences in coding and regulatory regions. Mol Cell Biol (2010) 1.02
p110 CUX1 cooperates with E2F transcription factors in the transcriptional activation of cell cycle-regulated genes. Mol Cell Biol (2008) 0.99
Vanishingly low levels of Ess1 prolyl-isomerase activity are sufficient for growth in Saccharomyces cerevisiae. J Biol Chem (2005) 0.97
Genetic interactions with C-terminal domain (CTD) kinases and the CTD of RNA Pol II suggest a role for ESS1 in transcription initiation and elongation in Saccharomyces cerevisiae. Genetics (2004) 0.96
The Ess1 prolyl isomerase is required for growth and morphogenetic switching in Candida albicans. Genetics (2002) 0.96
The writers, readers, and functions of the RNA polymerase II C-terminal domain code. Chem Rev (2013) 0.96
Novel effects of chromosome Y on cardiac regulation, chromatin remodeling, and neonatal programming in male mice. Endocrinology (2013) 0.91
Sap18 is required for the maternal gene bicoid to direct anterior patterning in Drosophila melanogaster. Dev Biol (2005) 0.91
The structure of the Candida albicans Ess1 prolyl isomerase reveals a well-ordered linker that restricts domain mobility. Biochemistry (2005) 0.90
Synthetic approaches to monofluoroalkenes. Chem Soc Rev (2011) 0.89
A positive feedback loop links opposing functions of P-TEFb/Cdk9 and histone H2B ubiquitylation to regulate transcript elongation in fission yeast. PLoS Genet (2012) 0.89
The Ess1 prolyl isomerase is dispensable for growth but required for virulence in Cryptococcus neoformans. Microbiology (2005) 0.86
Regulation of gluconeogenesis in Saccharomyces cerevisiae is mediated by activator and repressor functions of Rds2. Mol Cell Biol (2007) 0.86
Multiple roles for the Ess1 prolyl isomerase in the RNA polymerase II transcription cycle. Mol Cell Biol (2012) 0.83
Milestones in Candida albicans gene manipulation. Fungal Genet Biol (2011) 0.83
A 'dry' condensation origin for circumstellar carbonates. Nature (2005) 0.82
Unexpected foraminiferal diversity revealed by small-subunit rDNA analysis of Antarctic sediment. J Eukaryot Microbiol (2004) 0.82
Interaction networks of the molecular machines that decode, replicate, and maintain the integrity of the human genome. Mol Cell Proteomics (2004) 0.82
The peptidyl prolyl isomerase Rrd1 regulates the elongation of RNA polymerase II during transcriptional stresses. PLoS One (2011) 0.82
dSAP18 and dHDAC1 contribute to the functional regulation of the Drosophila Fab-7 element. Nucleic Acids Res (2005) 0.82
The Bin3 RNA methyltransferase is required for repression of caudal translation in the Drosophila embryo. Dev Biol (2011) 0.81
Steps towards a repertoire of comprehensive maps of human protein interaction networks: the Human Proteotheque Initiative (HuPI). Biochem Cell Biol (2008) 0.81
Activation of allylic C-F bonds: palladium-catalyzed allylic amination of 3,3-difluoropropenes. Angew Chem Int Ed Engl (2010) 0.81
Random deposition of histone variants: A cellular mistake or a novel regulatory mechanism? Epigenetics (2010) 0.81
SAP18 promotes Krüppel-dependent transcriptional repression by enhancer-specific histone deacetylation. J Biol Chem (2008) 0.80
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Comparison of promoter activities for efficient expression into human B cells and haematopoietic progenitors with adenovirus Ad5/F35. J Immunol Methods (2007) 0.79
Genome-wide location analysis reveals an important overlap between the targets of the yeast transcriptional regulators Rds2 and Adr1. Biochem Biophys Res Commun (2012) 0.79
Strain-dependent recovery of spontaneous hindlimb movement in spinal cord transected mice (CD1, C57BL/6, BALB/c). Behav Neurosci (2006) 0.79
Diversity in the Archean biosphere: new insights from NanoSIMS. Astrobiology (2010) 0.78
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The Bin3 RNA methyltransferase targets 7SK RNA to control transcription and translation. Wiley Interdiscip Rev RNA (2012) 0.77
Rpb4/7 facilitates RNA polymerase II CTD dephosphorylation. Nucleic Acids Res (2014) 0.77
Chemical mapping of proterozoic organic matter at submicron spatial resolution. Astrobiology (2006) 0.77
Restricted domain mobility in the Candida albicans Ess1 prolyl isomerase. Biochim Biophys Acta (2010) 0.77
Profiling genome-wide histone modifications and variants by ChIP-chip on tiling microarrays in S. cerevisiae. Methods Mol Biol (2009) 0.77
Role of Ess1 in growth, morphogenetic switching, and RNA polymerase II transcription in Candida albicans. PLoS One (2013) 0.75
The yeast Ess1 prolyl isomerase controls Swi6 and Whi5 nuclear localization. G3 (Bethesda) (2014) 0.75
Determination of the H isotopic composition of individual components in fine-scale mixtures of organic matter and phyllosilicates with the nanoscale secondary ion mass spectrometry. Anal Chem (2012) 0.75
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