Published in J Eukaryot Microbiol on May 11, 2004
Ultra-deep sequencing of foraminiferal microbarcodes unveils hidden richness of early monothalamous lineages in deep-sea sediments. Proc Natl Acad Sci U S A (2011) 1.34
Telonemia-specific environmental 18S rDNA PCR reveals unknown diversity and multiple marine-freshwater colonizations. BMC Microbiol (2010) 0.87
Biogeochemical and Microbial Variation across 5500 km of Antarctic Surface Sediment Implicates Organic Matter as a Driver of Benthic Community Structure. Front Microbiol (2016) 0.78
The new higher level classification of eukaryotes with emphasis on the taxonomy of protists. J Eukaryot Microbiol (2005) 7.94
First insights into the biodiversity and biogeography of the Southern Ocean deep sea. Nature (2007) 4.98
The revised classification of eukaryotes. J Eukaryot Microbiol (2012) 3.48
Phylogenomics reshuffles the eukaryotic supergroups. PLoS One (2007) 2.67
Phylogenomics reveals a new 'megagroup' including most photosynthetic eukaryotes. Biol Lett (2008) 2.30
Diversity, nomenclature, and taxonomy of protists. Syst Biol (2007) 2.17
A universal RNA polymerase II CTD cycle is orchestrated by complex interplays between kinase, phosphatase, and isomerase enzymes along genes. Mol Cell (2012) 1.93
The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote small sub-unit rRNA sequences with curated taxonomy. Nucleic Acids Res (2012) 1.93
Large-scale phylogenomic analyses reveal that two enigmatic protist lineages, telonemia and centroheliozoa, are related to photosynthetic chromalveolates. Genome Biol Evol (2009) 1.89
How many novel eukaryotic 'kingdoms'? Pitfalls and limitations of environmental DNA surveys. BMC Biol (2004) 1.89
CBOL protist working group: barcoding eukaryotic richness beyond the animal, plant, and fungal kingdoms. PLoS Biol (2012) 1.84
Molecular phylogeny, evolutionary rates, and divergence timing of the symbiotic dinoflagellate genus Symbiodinium. Mol Phylogenet Evol (2005) 1.82
The twilight of Heliozoa and rise of Rhizaria, an emerging supergroup of amoeboid eukaryotes. Proc Natl Acad Sci U S A (2004) 1.57
A molecular time-scale for eukaryote evolution recalibrated with the continuous microfossil record. Proc Biol Sci (2006) 1.53
The evolution of early Foraminifera. Proc Natl Acad Sci U S A (2003) 1.46
Phylogenomics of the intracellular parasite Mikrocytos mackini reveals evidence for a mitosome in rhizaria. Curr Biol (2013) 1.42
Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists. BMC Evol Biol (2010) 1.39
Bicoid cooperative DNA binding is critical for embryonic patterning in Drosophila. Proc Natl Acad Sci U S A (2005) 1.36
The Ess1 prolyl isomerase is required for transcription termination of small noncoding RNAs via the Nrd1 pathway. Mol Cell (2009) 1.35
Ultra-deep sequencing of foraminiferal microbarcodes unveils hidden richness of early monothalamous lineages in deep-sea sediments. Proc Natl Acad Sci U S A (2011) 1.34
Phylogenetic analysis and real time PCR detection of a presumbably undescribed Peronospora species on sweet basil and sage. Mycol Res (2005) 1.21
Potential of DNA sequences to identify zoanthids (Cnidaria: Zoantharia). Zoolog Sci (2008) 1.20
Deep phylogeny and evolution of slime moulds (mycetozoa). Protist (2009) 1.16
higher-order phylogeny of plasmodial slime molds (Myxogastria) based on elongation factor 1-A and small subunit rRNA gene sequences. J Eukaryot Microbiol (2005) 1.15
The Drosophila calcipressin sarah is required for several aspects of egg activation. Curr Biol (2006) 1.15
The testate lobose amoebae (order Arcellinida Kent, 1880) finally find their home within Amoebozoa. Protist (2005) 1.14
The ESS1 prolyl isomerase and its suppressor BYE1 interact with RNA pol II to inhibit transcription elongation in Saccharomyces cerevisiae. Genetics (2003) 1.12
Monophyly of Rhizaria and multigene phylogeny of unicellular bikonts. Mol Biol Evol (2006) 1.12
Prolyl isomerases in yeast. Front Biosci (2004) 1.10
A novel polyubiquitin structure in Cercozoa and Foraminifera: evidence for a new eukaryotic supergroup. Mol Biol Evol (2003) 1.10
Ancient DNA complements microfossil record in deep-sea subsurface sediments. Biol Lett (2013) 1.05
Phylogeny of lobose amoebae based on actin and small-subunit ribosomal RNA genes. Mol Biol Evol (2003) 1.03
Evolution of dark-spored Myxomycetes (slime-molds): molecules versus morphology. Mol Phylogenet Evol (2008) 1.03
Phylogenetic position of Gromia oviformis Dujardin inferred from nuclear-encoded small subunit ribosomal DNA. Protist (2002) 1.01
Small-subunit ribosomal RNA gene sequences of Phaeodarea challenge the monophyly of Haeckel's Radiolaria. Protist (2004) 1.00
Molecular phylogeny and classification of the lobose amoebae. Protist (2005) 1.00
Magnetococcus marinus gen. nov., sp. nov., a marine, magnetotactic bacterium that represents a novel lineage (Magnetococcaceae fam. nov., Magnetococcales ord. nov.) at the base of the Alphaproteobacteria. Int J Syst Evol Microbiol (2012) 0.99
Molecular identification of sequestered diatom chloroplasts and kleptoplastidy in foraminifera. Protist (2010) 0.99
Phylogenetic position of Multicilia marina and the evolution of Amoebozoa. Int J Syst Evol Microbiol (2006) 0.98
Extracellular fibrils of pathogenic yeast Cryptococcus gattii are important for ecological niche, murine virulence and human neutrophil interactions. PLoS One (2010) 0.98
Vanishingly low levels of Ess1 prolyl-isomerase activity are sufficient for growth in Saccharomyces cerevisiae. J Biol Chem (2005) 0.97
Genetic interactions with C-terminal domain (CTD) kinases and the CTD of RNA Pol II suggest a role for ESS1 in transcription initiation and elongation in Saccharomyces cerevisiae. Genetics (2004) 0.96
The Ess1 prolyl isomerase is required for growth and morphogenetic switching in Candida albicans. Genetics (2002) 0.96
Revised small subunit rRNA analysis provides further evidence that Foraminifera are related to Cercozoa. J Mol Evol (2003) 0.96
Foraminifera and Cercozoa share a common origin according to RNA polymerase II phylogenies. Int J Syst Evol Microbiol (2003) 0.95
Polyubiquitin insertions and the phylogeny of Cercozoa and Rhizaria. Protist (2005) 0.93
An ectobiont-bearing foraminiferan, Bolivina pacifica, that inhabits microxic pore waters: cell-biological and paleoceanographic insights. Environ Microbiol (2009) 0.93
Freshwater foraminiferans revealed by analysis of environmental DNA samples. J Eukaryot Microbiol (2003) 0.92
Peroxisome proliferation in Foraminifera inhabiting the chemocline: an adaptation to reactive oxygen species exposure? J Eukaryot Microbiol (2008) 0.91
Sap18 is required for the maternal gene bicoid to direct anterior patterning in Drosophila melanogaster. Dev Biol (2005) 0.91
The structure of the Candida albicans Ess1 prolyl isomerase reveals a well-ordered linker that restricts domain mobility. Biochemistry (2005) 0.90
Intra-genomic ribosomal RNA polymorphism and morphological variation in Elphidium macellum suggests inter-specific hybridization in foraminifera. PLoS One (2012) 0.90
Higher-level phylogeny of Foraminifera inferred from the RNA polymerase II (RPB1) gene. Eur J Protistol (2007) 0.89
Transcriptome analysis of foraminiferan Elphidium margaritaceum questions the role of gene transfer in kleptoplastidy. Mol Biol Evol (2012) 0.89
Can abundance of protists be inferred from sequence data: a case study of foraminifera. PLoS One (2013) 0.88
Barcoding amoebae: comparison of SSU, ITS and COI genes as tools for molecular identification of naked lobose amoebae. Protist (2009) 0.88
Phylogeny and ultrastructure of Miliammina fusca: evidence for secondary loss of calcification in a Miliolid Foraminifer. J Eukaryot Microbiol (2006) 0.87
The Ess1 prolyl isomerase is dispensable for growth but required for virulence in Cryptococcus neoformans. Microbiology (2005) 0.86
Structural and functional implications of an unusual foraminiferal beta-tubulin. Mol Biol Evol (2005) 0.86
Bayesian relaxed clock estimation of divergence times in foraminifera. Mol Phylogenet Evol (2011) 0.86
Deep relationships of Rhizaria revealed by phylogenomics: a farewell to Haeckel's Radiolaria. Mol Phylogenet Evol (2012) 0.85
Molecular evidence for widespread occurrence of Foraminifera in soils. Environ Microbiol (2010) 0.85
Analysis of expressed sequence tags from a naked foraminiferan Reticulomyxa filosa. Genome (2006) 0.85
Comparing potential COI and SSU rDNA barcodes for assessing the diversity and phylogenetic relationships of cyphoderiid testate amoebae (Rhizaria: Euglyphida). Protist (2010) 0.85
Molecular phylogeny of euglyphid testate amoebae (Cercozoa: Euglyphida) suggests transitions between marine supralittoral and freshwater/terrestrial environments are infrequent. Mol Phylogenet Evol (2009) 0.84
Molecular evidence for host-symbiont specificity in soritid foraminifera. Protist (2005) 0.83
Tempo and mode of spliceosomal intron evolution in actin of foraminifera. J Mol Evol (2006) 0.83
Multiple roles for the Ess1 prolyl isomerase in the RNA polymerase II transcription cycle. Mol Cell Biol (2012) 0.83
Milestones in Candida albicans gene manipulation. Fungal Genet Biol (2011) 0.83
dSAP18 and dHDAC1 contribute to the functional regulation of the Drosophila Fab-7 element. Nucleic Acids Res (2005) 0.82
The Bin3 RNA methyltransferase is required for repression of caudal translation in the Drosophila embryo. Dev Biol (2011) 0.81
Structure, expression and function of Allomyces arbuscula CDP II (metacaspase) gene. Gene (2010) 0.81
Squamamoeba japonica n. g. n. sp. (Amoebozoa): a deep-sea amoeba from the Sea of Japan with a novel cell coat structure. Protist (2012) 0.81
SAP18 promotes Krüppel-dependent transcriptional repression by enhancer-specific histone deacetylation. J Biol Chem (2008) 0.80
Semimorula liquescens is a modified echinostelid myxomycete (Mycetozoa). Mycologia (2009) 0.80
The second species of Gromia (Protista) from the deep sea: its natural history and association with the Pakistan margin oxygen minimum zone. Protist (2005) 0.78
Predicted secondary structure of the foraminiferal SSU 3' major domain reveals a molecular synapomorphy for granuloreticulosean protists. J Eukaryot Microbiol (2004) 0.78
Molecular evidence for Lessepsian invasion of soritids (larger symbiont bearing benthic foraminifera). PLoS One (2013) 0.78
Molecular evidence for β-tubulin neofunctionalization in Retaria (Foraminifera and radiolarians). Mol Biol Evol (2013) 0.78
A marine dinoflagellate, Amphidinium eilatiensis n. sp., from the benthos of a mariculture sedimentation pond in Eilat, Israel. J Eukaryot Microbiol (2004) 0.78
Ovalopodium desertum n. sp. and the phylogenetic relationships of Cochliopodiidae (Amoebozoa). Protist (2011) 0.78
Description and phylogenetic relationships of Spumochlamys perforata n. sp. and Spumochlamys bryora n. sp. (Amoebozoa, Arcellinida). J Eukaryot Microbiol (2009) 0.77
Restricted domain mobility in the Candida albicans Ess1 prolyl isomerase. Biochim Biophys Acta (2010) 0.77
The Bin3 RNA methyltransferase targets 7SK RNA to control transcription and translation. Wiley Interdiscip Rev RNA (2012) 0.77
High-throughput sequencing of Astrammina rara: sampling the giant genome of a giant foraminiferan protist. BMC Genomics (2011) 0.77
Rpb4/7 facilitates RNA polymerase II CTD dephosphorylation. Nucleic Acids Res (2014) 0.77
The yeast Ess1 prolyl isomerase controls Swi6 and Whi5 nuclear localization. G3 (Bethesda) (2014) 0.75
Role of Ess1 in growth, morphogenetic switching, and RNA polymerase II transcription in Candida albicans. PLoS One (2013) 0.75
Dependence of interfacial film organization on lipid molecular structure. Langmuir (2014) 0.75
Molecular phylogenetic analysis places Percolomonas cosmopolitus within Heterolobosea: evolutionary implications. J Eukaryot Microbiol (2004) 0.75
Arnoldiellina fluorescens gen. et sp. nov.--a new green autofluorescent foraminifer from the Gulf of Eilat (Israel). Eur J Protistol (2012) 0.75
Rhizamoeba neglecta n. sp. (Amoebozoa, Tubulinea) from the bottom sediments of freshwater Lake Leshevoe (Valamo Island, North-Western Russia), with notes on the phylogeny of the order Leptomyxida. Eur J Protistol (2009) 0.75
Molecular Phylogeny and Morphology of Leannia veloxifera n. gen. et sp. Unveils a New Lineage of Monothalamous Foraminifera. J Eukaryot Microbiol (2014) 0.75