Published in PLoS One on January 27, 2012
MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics (2003) 130.85
MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics (2001) 101.31
jModelTest: phylogenetic model averaging. Mol Biol Evol (2008) 44.78
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics (2009) 44.48
Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour (2010) 42.87
Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol (1999) 35.53
SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol Biol Evol (2009) 21.24
Bayesian coalescent inference of past population dynamics from molecular sequences. Mol Biol Evol (2005) 18.57
DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA. Nucleic Acids Res (2001) 6.06
The initial domestication of goats (Capra hircus) in the Zagros mountains 10,000 years ago. Science (2000) 4.09
DNA markers reveal the complexity of livestock domestication. Nat Rev Genet (2003) 3.07
Multiple maternal origins and weak phylogeographic structure in domestic goats. Proc Natl Acad Sci U S A (2001) 2.87
Ancient DNA analysis reveals divergence of the cave bear, Ursus spelaeus, and brown bear, Ursus arctos, lineages. Curr Biol (2001) 2.11
The goat domestication process inferred from large-scale mitochondrial DNA analysis of wild and domestic individuals. Proc Natl Acad Sci U S A (2008) 2.07
The origins of animal domestication and husbandry: a major change in the history of humanity and the biosphere. C R Biol (2011) 1.84
Are cattle, sheep, and goats endangered species? Mol Ecol (2007) 1.74
Large-scale mitochondrial DNA analysis of the domestic goat reveals six haplogroups with high diversity. PLoS One (2007) 1.72
Divergent mtDNA lineages of goats in an Early Neolithic site, far from the initial domestication areas. Proc Natl Acad Sci U S A (2006) 1.66
Geographical partitioning of goat diversity in Europe and the Middle East. Anim Genet (2006) 1.38
Mitochondrial diversity and phylogeographic structure of Chinese domestic goats. Mol Phylogenet Evol (2005) 1.20
The mtDNA catalogue of all Portuguese autochthonous goat (Capra hircus) breeds: high diversity of female lineages at the western fringe of European distribution. Mol Ecol (2005) 1.16
Ancient DNA and the population genetics of cave bears (Ursus spelaeus) through space and time. Mol Biol Evol (2002) 1.11
[Not Available]. Ann Genet Sel Anim (1979) 1.07
Tracing the history of goat pastoralism: new clues from mitochondrial and Y chromosome DNA in North Africa. Mol Biol Evol (2009) 1.07
Ancient DNA evidence for the loss of a highly divergent brown bear clade during historical times. Mol Ecol (2008) 0.99
Phylogenetic analysis of Sicilian goats reveals a new mtDNA lineage. Anim Genet (2006) 0.97
Molecular phylogeny of the extinct giant deer, Megaloceros giganteus. Mol Phylogenet Evol (2006) 0.95
Geographical patterning of sixteen goat breeds from Italy, Albania and Greece assessed by Single Nucleotide Polymorphisms. BMC Ecol (2009) 0.89
Phylogenetic relationships among Spanish goats breeds. Anim Genet (2005) 0.89
DNA from extinct giant lemurs links archaeolemurids to extant indriids. BMC Evol Biol (2008) 0.86
D-loop sequence mitochondrial DNA variability of Sarda goat and other goat breeds and populations reared in the Mediterranean area. J Anim Breed Genet (2010) 0.84
The power and promise of population genomics: from genotyping to genome typing. Nat Rev Genet (2003) 6.13
Power and limitations of the chloroplast trnL (UAA) intron for plant DNA barcoding. Nucleic Acids Res (2006) 5.31
DNA barcoding for ecologists. Trends Ecol Evol (2008) 5.08
Genotyping errors: causes, consequences and solutions. Nat Rev Genet (2005) 5.00
Species detection using environmental DNA from water samples. Biol Lett (2008) 4.96
Ancient biomolecules from deep ice cores reveal a forested southern Greenland. Science (2007) 3.79
Who is eating what: diet assessment using next generation sequencing. Mol Ecol (2011) 3.53
Ancient DNA, pig domestication, and the spread of the Neolithic into Europe. Proc Natl Acad Sci U S A (2007) 3.45
The derived FOXP2 variant of modern humans was shared with Neandertals. Curr Biol (2007) 3.39
The origin of European cattle: evidence from modern and ancient DNA. Proc Natl Acad Sci U S A (2006) 3.09
ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases. BMC Microbiol (2010) 2.95
Persistence of environmental DNA in freshwater ecosystems. PLoS One (2011) 2.75
Neanderthals in central Asia and Siberia. Nature (2007) 2.64
Mitochondrial DNA analysis shows a Near Eastern Neolithic origin for domestic cattle and no indication of domestication of European aurochs. Proc Biol Sci (2007) 2.61
Phylogeny and ancient DNA of Sus provides insights into neolithic expansion in Island Southeast Asia and Oceania. Proc Natl Acad Sci U S A (2007) 2.60
New perspectives in diet analysis based on DNA barcoding and parallel pyrosequencing: the trnL approach. Mol Ecol Resour (2008) 2.58
Towards next-generation biodiversity assessment using DNA metabarcoding. Mol Ecol (2012) 2.43
Environmental DNA. Mol Ecol (2012) 2.36
Glacial survival of boreal trees in northern Scandinavia. Science (2012) 2.28
The goat domestication process inferred from large-scale mitochondrial DNA analysis of wild and domestic individuals. Proc Natl Acad Sci U S A (2008) 2.07
Frequent long-distance plant colonization in the changing Arctic. Science (2007) 2.06
Revisiting Neandertal diversity with a 100,000 year old mtDNA sequence. Curr Biol (2006) 2.04
An in silico approach for the evaluation of DNA barcodes. BMC Genomics (2010) 1.99
Morphological convergence in Hippidion and Equus (Amerhippus) South American equids elucidated by ancient DNA analysis. J Mol Evol (2003) 1.90
Explorative genome scan to detect candidate loci for adaptation along a gradient of altitude in the common frog (Rana temporaria). Mol Biol Evol (2006) 1.90
First wave of cultivators spread to Cyprus at least 10,600 y ago. Proc Natl Acad Sci U S A (2012) 1.79
Rethinking dog domestication by integrating genetics, archeology, and biogeography. Proc Natl Acad Sci U S A (2012) 1.78
Prey preference of snow leopard (Panthera uncia) in South Gobi, Mongolia. PLoS One (2012) 1.76
Large-scale mitochondrial DNA analysis of the domestic goat reveals six haplogroups with high diversity. PLoS One (2007) 1.72
Analysing diet of small herbivores: the efficiency of DNA barcoding coupled with high-throughput pyrosequencing for deciphering the composition of complex plant mixtures. Front Zool (2009) 1.68
African origins of the domestic donkey. Science (2004) 1.68
Pig domestication and human-mediated dispersal in western Eurasia revealed through ancient DNA and geometric morphometrics. Mol Biol Evol (2012) 1.68
Universal DNA-based methods for assessing the diet of grazing livestock and wildlife from feces. J Agric Food Chem (2009) 1.67
Divergent mtDNA lineages of goats in an Early Neolithic site, far from the initial domestication areas. Proc Natl Acad Sci U S A (2006) 1.66
Carnivore diet analysis based on next-generation sequencing: application to the leopard cat (Prionailurus bengalensis) in Pakistan. Mol Ecol (2012) 1.65
AFLP markers reveal high clonal diversity and extreme longevity in four key arctic-alpine species. Mol Ecol (2011) 1.49
Microsatellite diversity suggests different histories for Mediterranean and Northern European cattle populations. Proc Biol Sci (2005) 1.49
Surprising migration and population size dynamics in ancient Iberian brown bears (Ursus arctos). Proc Natl Acad Sci U S A (2008) 1.44
New generation sequencers as a tool for genotyping of highly polymorphic multilocus MHC system. Mol Ecol Resour (2009) 1.44
Revising the recent evolutionary history of equids using ancient DNA. Proc Natl Acad Sci U S A (2009) 1.43
Genetic diversity of European cattle breeds highlights the conservation value of traditional unselected breeds with high effective population size. Mol Ecol (2009) 1.43
Use of amplified fragment length polymorphism (AFLP) markers in surveys of vertebrate diversity. Methods Enzymol (2005) 1.33
ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis. Nucleic Acids Res (2011) 1.33
Tracking genes of ecological relevance using a genome scan in two independent regional population samples of Arabis alpina. Mol Ecol (2010) 1.31
Ancient DNA analysis reveals woolly rhino evolutionary relationships. Mol Phylogenet Evol (2003) 1.28
Genetic differentiation of the house mouse around the Mediterranean basin: matrilineal footprints of early and late colonization. Proc Biol Sci (2010) 1.27
Replication levels, false presences and the estimation of the presence/absence from eDNA metabarcoding data. Mol Ecol Resour (2014) 1.27
Genetic consequences of climate change for northern plants. Proc Biol Sci (2012) 1.25
Combined analysis of fourteen nuclear genes refines the Ursidae phylogeny. Mol Phylogenet Evol (2007) 1.24
Importance of accounting for detection heterogeneity when estimating abundance: the case of French wolves. Conserv Biol (2010) 1.22
Forecasting changes in population genetic structure of alpine plants in response to global warming. Mol Ecol (2012) 1.22
A comparative study of ancient sedimentary DNA, pollen and macrofossils from permafrost sediments of northern Siberia reveals long-term vegetational stability. Mol Ecol (2012) 1.20
Population adaptive index: a new method to help measure intraspecific genetic diversity and prioritize populations for conservation. Conserv Biol (2007) 1.18
New environmental metabarcodes for analysing soil DNA: potential for studying past and present ecosystems. Mol Ecol (2012) 1.18
Conservation genetics of cattle, sheep, and goats. C R Biol (2011) 1.18
From the Apennines to the Alps: colonization genetics of the naturally expanding Italian wolf (Canis lupus) population. Mol Ecol (2007) 1.18
Divergent evolutionary processes associated with colonization of offshore islands. Mol Ecol (2013) 1.16
The dilemma of female mate selection in the brown bear, a species with sexually selected infanticide. Proc Biol Sci (2006) 1.14
Using AFLP to resolve phylogenetic relationships in a morphologically diversified plant species complex when nuclear and chloroplast sequences fail to reveal variability. Mol Phylogenet Evol (2003) 1.14
Genetic roadmap of the Arctic: plant dispersal highways, traffic barriers and capitals of diversity. New Phytol (2013) 1.14
Y-SNPs do not indicate hybridisation between European aurochs and domestic cattle. PLoS One (2008) 1.13
A molecular phylogeny of anseriformes based on mitochondrial DNA analysis. Mol Phylogenet Evol (2002) 1.11
Ancient DNA and the population genetics of cave bears (Ursus spelaeus) through space and time. Mol Biol Evol (2002) 1.11
History or ecology? Substrate type as a major driver of spatial genetic structure in Alpine plants. Ecol Lett (2009) 1.11
Soil sampling and isolation of extracellular DNA from large amount of starting material suitable for metabarcoding studies. Mol Ecol (2012) 1.09
Food and forensic molecular identification: update and challenges. Trends Biotechnol (2005) 1.06
Evolutionary history of the genus Capra (Mammalia, Artiodactyla): discordance between mitochondrial DNA and Y-chromosome phylogenies. Mol Phylogenet Evol (2006) 1.05
Major histocompatibility complex class II compatibility, but not class I, predicts mate choice in a bird with highly developed olfaction. Proc Biol Sci (2012) 1.05
Neofunctionalization in vertebrates: the example of retinoic acid receptors. PLoS Genet (2006) 1.05
Modern taurine cattle descended from small number of near-eastern founders. Mol Biol Evol (2012) 1.05
Genetic estimates of annual reproductive success in male brown bears: the effects of body size, age, internal relatedness and population density. J Anim Ecol (2007) 1.03
Evolution and taxonomy of the wild species of the genus Ovis (Mammalia, Artiodactyla, Bovidae). Mol Phylogenet Evol (2009) 1.01
Ancient DNA evidence for the loss of a highly divergent brown bear clade during historical times. Mol Ecol (2008) 0.99
Last hunter-gatherers and first farmers of Europe. C R Biol (2011) 0.98
Assessment of the food habits of the Moroccan dorcas gazelle in M'Sabih Talaa, west central Morocco, using the trnL approach. PLoS One (2012) 0.97
Broad-scale adaptive genetic variation in alpine plants is driven by temperature and precipitation. Mol Ecol (2012) 0.97
A DNA metabarcoding study of a primate dietary diversity and plasticity across its entire fragmented range. PLoS One (2013) 0.96
Using classical population genetics tools with heterochroneous data: time matters! PLoS One (2009) 0.95
Molecular phylogeny of the extinct giant deer, Megaloceros giganteus. Mol Phylogenet Evol (2006) 0.95
Bovine tuberculosis in livestock and wild boar on the Mediterranean island, Corsica. J Wildl Dis (2010) 0.95
Tracking earthworm communities from soil DNA. Mol Ecol (2012) 0.94