Published in J Vis Exp on January 26, 2012
Photoautotrophic production of D-lactic acid in an engineered cyanobacterium. Microb Cell Fact (2013) 0.99
Incomplete Wood-Ljungdahl pathway facilitates one-carbon metabolism in organohalide-respiring Dehalococcoides mccartyi. Proc Natl Acad Sci U S A (2014) 0.96
Metabolic engineering of Synechocystis sp. strain PCC 6803 for isobutanol production. Appl Environ Microbiol (2012) 0.96
Development of Synechocystis sp. PCC 6803 as a phototrophic cell factory. Mar Drugs (2013) 0.95
Application of stable isotope-assisted metabolomics for cell metabolism studies. Metabolites (2014) 0.86
Decoding how a soil bacterium extracts building blocks and metabolic energy from ligninolysis provides road map for lignin valorization. Proc Natl Acad Sci U S A (2016) 0.80
Photoheterotrophic fluxome in Synechocystis sp. strain PCC 6803 and its implications for cyanobacterial bioenergetics. J Bacteriol (2014) 0.77
Examining Escherichia coli glycolytic pathways, catabolite repression, and metabolite channeling using Δpfk mutants. Biotechnol Biofuels (2016) 0.77
Exploring eukaryotic formate metabolisms to enhance microbial growth and lipid accumulation. Biotechnol Biofuels (2017) 0.75
Two Pathways for Glutamate Biosynthesis in the Syntrophic Bacterium Syntrophus aciditrophicus. Appl Environ Microbiol (2015) 0.75
Glycine Cleavage Powers Photoheterotrophic Growth of Chloroflexus aurantiacus in the Absence of H 2. Front Microbiol (2015) 0.75
(13)C-Metabolic Flux Analysis: An Accurate Approach to Demystify Microbial Metabolism for Biochemical Production. Bioengineering (Basel) (2015) 0.75
(13)C-based metabolic flux analysis. Nat Protoc (2009) 2.75
Synthesis of C5-dicarboxylic acids from C2-units involving crotonyl-CoA carboxylase/reductase: the ethylmalonyl-CoA pathway. Proc Natl Acad Sci U S A (2007) 2.49
Unicellular, aerobic nitrogen-fixing cyanobacteria of the genus Cyanothece. J Bacteriol (1993) 2.22
Accurate assessment of amino acid mass isotopomer distributions for metabolic flux analysis. Anal Chem (2007) 1.99
New tools for mass isotopomer data evaluation in (13)C flux analysis: mass isotope correction, data consistency checking, and precursor relationships. Biotechnol Bioeng (2004) 1.76
GC-MS analysis of amino acids rapidly provides rich information for isotopomer balancing. Biotechnol Prog (2000) 1.65
Carbon dioxide fixation as a central redox cofactor recycling mechanism in bacteria. Proc Natl Acad Sci U S A (2010) 1.63
Pathway confirmation and flux analysis of central metabolic pathways in Desulfovibrio vulgaris hildenborough using gas chromatography-mass spectrometry and Fourier transform-ion cyclotron resonance mass spectrometry. J Bacteriol (2006) 1.40
Carbohydrate metabolism and carbon fixation in Roseobacter denitrificans OCh114. PLoS One (2009) 1.32
Fluxome analysis using GC-MS. Microb Cell Fact (2007) 1.31
Advances in analysis of microbial metabolic fluxes via (13)C isotopic labeling. Mass Spectrom Rev (2009) 1.31
Novel biological insights through metabolomics and 13C-flux analysis. Curr Opin Microbiol (2009) 1.23
Investigation of carbon metabolism in "Dehalococcoides ethenogenes" strain 195 by use of isotopomer and transcriptomic analyses. J Bacteriol (2009) 1.22
Anaerobic central metabolic pathways in Shewanella oneidensis MR-1 reinterpreted in the light of isotopic metabolite labeling. J Bacteriol (2006) 1.17
Characterization of the central metabolic pathways in Thermoanaerobacter sp. strain X514 via isotopomer-assisted metabolite analysis. Appl Environ Microbiol (2009) 1.14
Mixotrophic and photoheterotrophic metabolism in Cyanothece sp. ATCC 51142 under continuous light. Microbiology (2010) 1.14
Flux analysis of central metabolic pathways in Geobacter metallireducens during reduction of soluble Fe(III)-nitrilotriacetic acid. Appl Environ Microbiol (2007) 1.09
A transient isotopic labeling methodology for 13C metabolic flux analysis of photoautotrophic microorganisms. Phytochemistry (2007) 1.05
Calvin cycle flux, pathway constraints, and substrate oxidation state together determine the H2 biofuel yield in photoheterotrophic bacteria. MBio (2011) 1.03
Selective utilization of exogenous amino acids by Dehalococcoides ethenogenes strain 195 and its effects on growth and dechlorination activity. Appl Environ Microbiol (2011) 0.98
Alternative isoleucine synthesis pathway in cyanobacterial species. Microbiology (2009) 0.95
Carbon flow of heliobacteria is related more to clostridia than to the green sulfur bacteria. J Biol Chem (2010) 0.88
Invariability of central metabolic flux distribution in Shewanella oneidensis MR-1 under environmental or genetic perturbations. Biotechnol Prog (2009) 0.86
Isotopomer distributions in amino acids from a highly expressed protein as a proxy for those from total protein. Anal Chem (2008) 0.84
High rates of photobiological H2 production by a cyanobacterium under aerobic conditions. Nat Commun (2010) 2.17
The genome of Cyanothece 51142, a unicellular diazotrophic cyanobacterium important in the marine nitrogen cycle. Proc Natl Acad Sci U S A (2008) 2.05
Global transcriptomic analysis of Cyanothece 51142 reveals robust diurnal oscillation of central metabolic processes. Proc Natl Acad Sci U S A (2008) 2.00
Proteomic analysis of a highly active photosystem II preparation from the cyanobacterium Synechocystis sp. PCC 6803 reveals the presence of novel polypeptides. Biochemistry (2002) 1.86
Niche adaptation and genome expansion in the chlorophyll d-producing cyanobacterium Acaryochloris marina. Proc Natl Acad Sci U S A (2008) 1.70
Differential transcriptional analysis of the cyanobacterium Cyanothece sp. strain ATCC 51142 during light-dark and continuous-light growth. J Bacteriol (2008) 1.60
Synthetic biology of cyanobacteria: unique challenges and opportunities. Front Microbiol (2013) 1.38
An inquiry into protein structure and genetic disease: introducing undergraduates to bioinformatics in a large introductory course. Cell Biol Educ (2005) 1.37
Ultrastructure of the membrane systems in the unicellular cyanobacterium Synechocystis sp. strain PCC 6803. Protoplasma (2006) 1.34
The extrinsic proteins of Photosystem II. Photosynth Res (2007) 1.33
Carbohydrate metabolism and carbon fixation in Roseobacter denitrificans OCh114. PLoS One (2009) 1.32
Structural determinants of metal specificity in the zinc transport protein ZnuA from synechocystis 6803. J Mol Biol (2003) 1.30
Evidence that D1 processing is required for manganese binding and extrinsic protein assembly into photosystem II. J Biol Chem (2004) 1.28
Proteomics of Synechocystis sp. strain PCC 6803: identification of plasma membrane proteins. Mol Cell Proteomics (2002) 1.26
Identification of an atypical membrane protein involved in the formation of protein disulfide bonds in oxygenic photosynthetic organisms. J Biol Chem (2008) 1.23
Homologs of plant PsbP and PsbQ proteins are necessary for regulation of photosystem ii activity in the cyanobacterium Synechocystis 6803. Plant Cell (2004) 1.23
Critical roles of bacterioferritins in iron storage and proliferation of cyanobacteria. Plant Physiol (2004) 1.18
Global proteomics reveal an atypical strategy for carbon/nitrogen assimilation by a cyanobacterium under diverse environmental perturbations. Mol Cell Proteomics (2010) 1.18
Novel metabolic attributes of the genus cyanothece, comprising a group of unicellular nitrogen-fixing Cyanothece. MBio (2011) 1.14
Characterization of the central metabolic pathways in Thermoanaerobacter sp. strain X514 via isotopomer-assisted metabolite analysis. Appl Environ Microbiol (2009) 1.14
Mixotrophic and photoheterotrophic metabolism in Cyanothece sp. ATCC 51142 under continuous light. Microbiology (2010) 1.14
Isolation, subunit composition and interaction of the NDH-1 complexes from Thermosynechococcus elongatus BP-1. Biochem J (2005) 1.13
Unique thylakoid membrane architecture of a unicellular N2-fixing cyanobacterium revealed by electron tomography. Plant Physiol (2010) 1.12
The structure of a cyanobacterial bicarbonate transport protein, CmpA. J Biol Chem (2006) 1.11
Carbon metabolic pathways in phototrophic bacteria and their broader evolutionary implications. Front Microbiol (2011) 1.10
Integrative analysis of large scale expression profiles reveals core transcriptional response and coordination between multiple cellular processes in a cyanobacterium. BMC Syst Biol (2010) 1.08
A light-dependent mechanism for massive accumulation of manganese in the photosynthetic bacterium Synechocystis sp. PCC 6803. Biochemistry (2002) 1.08
A photobioreactor system for precision cultivation of photoautotrophic microorganisms and for high-content analysis of suspension dynamics. Biotechnol Bioeng (2008) 1.08
The Psb27 protein facilitates manganese cluster assembly in photosystem II. J Biol Chem (2007) 1.07
Photosynthetic pigment localization and thylakoid membrane morphology are altered in Synechocystis 6803 phycobilisome mutants. Plant Physiol (2012) 1.06
The PsbQ protein defines cyanobacterial Photosystem II complexes with highest activity and stability. Proc Natl Acad Sci U S A (2007) 1.06
Integration of carbon and nitrogen metabolism with energy production is crucial to light acclimation in the cyanobacterium Synechocystis. Plant Physiol (2008) 1.06
Response to oxidative stress involves a novel peroxiredoxin gene in the unicellular cyanobacterium Synechocystis sp. PCC 6803. Plant Cell Physiol (2004) 1.06
Characterization of two potentially universal turn motifs that shape the repeated five-residues fold--crystal structure of a lumenal pentapeptide repeat protein from Cyanothece 51142. Protein Sci (2006) 1.05
Psb29, a conserved 22-kD protein, functions in the biogenesis of Photosystem II complexes in Synechocystis and Arabidopsis. Plant Cell (2005) 1.04
Photochemical competence of assembled photosystem II core complex in cyanobacterial plasma membrane. J Biol Chem (2004) 1.03
Regulation of manganese uptake in Synechocystis 6803 by RfrA, a member of a novel family of proteins containing a repeated five-residues domain. Biochemistry (2003) 1.02
Effect of continuous light on diurnal rhythms in Cyanothece sp. ATCC 51142. BMC Genomics (2009) 1.02
A two-component signal transduction pathway regulates manganese homeostasis in Synechocystis 6803, a photosynthetic organism. J Biol Chem (2002) 1.01
Atomic structure of a nitrate-binding protein crucial for photosynthetic productivity. Proc Natl Acad Sci U S A (2006) 1.01
Possible regulatory role for the histidine-rich loop in the zinc transport protein, ZnuA. Biochemistry (2007) 1.01
Psb27, a transiently associated protein, binds to the chlorophyll binding protein CP43 in photosystem II assembly intermediates. Proc Natl Acad Sci U S A (2011) 1.00
Diurnal rhythms result in significant changes in the cellular protein complement in the cyanobacterium Cyanothece 51142. PLoS One (2011) 1.00
Separation and mass spectrometry in microbial metabolomics. Curr Opin Microbiol (2008) 1.00
Reduction of photoautotrophic productivity in the cyanobacterium Synechocystis sp. strain PCC 6803 by phycobilisome antenna truncation. Appl Environ Microbiol (2012) 0.99
Photoautotrophic production of D-lactic acid in an engineered cyanobacterium. Microb Cell Fact (2013) 0.99
Essential role of glutathione in acclimation to environmental and redox perturbations in the cyanobacterium Synechocystis sp. PCC 6803. Plant Physiol (2010) 0.98
MS-based cross-linking analysis reveals the location of the PsbQ protein in cyanobacterial photosystem II. Proc Natl Acad Sci U S A (2014) 0.98
Selective utilization of exogenous amino acids by Dehalococcoides ethenogenes strain 195 and its effects on growth and dechlorination activity. Appl Environ Microbiol (2011) 0.98
Organization and flexibility of cyanobacterial thylakoid membranes examined by neutron scattering. J Biol Chem (2012) 0.98
Central metabolic responses to the overproduction of fatty acids in Escherichia coli based on 13C-metabolic flux analysis. Biotechnol Bioeng (2014) 0.97
Low-molecular-mass polypeptide components of a photosystem II preparation from the thermophilic cyanobacterium Thermosynechococcus vulcanus. Plant Cell Physiol (2002) 0.97
Incomplete Wood-Ljungdahl pathway facilitates one-carbon metabolism in organohalide-respiring Dehalococcoides mccartyi. Proc Natl Acad Sci U S A (2014) 0.96
Metabolic engineering of Synechocystis sp. strain PCC 6803 for isobutanol production. Appl Environ Microbiol (2012) 0.96
A genetically tagged Psb27 protein allows purification of two consecutive photosystem II (PSII) assembly intermediates in Synechocystis 6803, a cyanobacterium. J Biol Chem (2011) 0.96
Correlation of genomic and physiological traits of thermoanaerobacter species with biofuel yields. Appl Environ Microbiol (2011) 0.96
Integrating flux balance analysis into kinetic models to decipher the dynamic metabolism of Shewanella oneidensis MR-1. PLoS Comput Biol (2012) 0.96
Alternative isoleucine synthesis pathway in cyanobacterial species. Microbiology (2009) 0.95
Development of Synechocystis sp. PCC 6803 as a phototrophic cell factory. Mar Drugs (2013) 0.95
Reconstruction and comparison of the metabolic potential of cyanobacteria Cyanothece sp. ATCC 51142 and Synechocystis sp. PCC 6803. PLoS One (2012) 0.94
A model of cyclic transcriptomic behavior in the cyanobacterium Cyanothece sp. ATCC 51142. Mol Biosyst (2011) 0.93
13C-MFA delineates the photomixotrophic metabolism of Synechocystis sp. PCC 6803 under light- and carbon-sufficient conditions. Biotechnol J (2014) 0.93
Identification and localization of the CupB protein involved in constitutive CO2 uptake in the cyanobacterium, Synechocystis sp. strain PCC 6803. Plant Cell Physiol (2008) 0.93
Properties of mutants of Synechocystis sp. strain PCC 6803 lacking inorganic carbon sequestration systems. Plant Cell Physiol (2008) 0.92
Variations in the rhythms of respiration and nitrogen fixation in members of the unicellular diazotrophic cyanobacterial genus Cyanothece. Plant Physiol (2012) 0.92
Anti-microbial activities of aerosolized transition metal oxide nanoparticles. Chemosphere (2010) 0.92
Central metabolism in Mycobacterium smegmatis during the transition from O2-rich to O2-poor conditions as studied by isotopomer-assisted metabolite analysis. Biotechnol Lett (2009) 0.91
Viability and metal reduction of Shewanella oneidensis MR-1 under CO2 stress: implications for ecological effects of CO2 leakage from geologic CO2 sequestration. Environ Sci Technol (2010) 0.91
A network of genes regulated by light in cyanobacteria. OMICS (2007) 0.90
Sulphate as a xylem-borne chemical signal precedes the expression of ABA biosynthetic genes in maize roots. J Exp Bot (2010) 0.90
MicrobesFlux: a web platform for drafting metabolic models from the KEGG database. BMC Syst Biol (2012) 0.90
Study of stationary phase metabolism via isotopomer analysis of amino acids from an isolated protein. Biotechnol Prog (2010) 0.90
PsbU provides a stable architecture for the oxygen-evolving system in cyanobacterial photosystem II. Biochemistry (2005) 0.90
Bacterial responses to Cu-doped TiO(2) nanoparticles. Sci Total Environ (2009) 0.90
Metabolic flux analysis of the mixotrophic metabolisms in the green sulfur bacterium Chlorobaculum tepidum. J Biol Chem (2010) 0.89
Recent advances in mapping environmental microbial metabolisms through 13C isotopic fingerprints. J R Soc Interface (2012) 0.89
Absence of the PsbQ protein results in destabilization of the PsbV protein and decreased oxygen evolution activity in cyanobacterial photosystem II. J Biol Chem (2006) 0.88
Dynamic proteomic profiling of a unicellular cyanobacterium Cyanothece ATCC51142 across light-dark diurnal cycles. BMC Syst Biol (2011) 0.88
A systems-level analysis of the effects of light quality on the metabolism of a cyanobacterium. Plant Physiol (2009) 0.88
Insights into the structural variation between pentapeptide repeat proteins--crystal structure of Rfr23 from Cyanothece 51142. J Struct Biol (2007) 0.88
High sensitivity proteomics assisted discovery of a novel operon involved in the assembly of photosystem II, a membrane protein complex. J Biol Chem (2008) 0.88
Carbon flow of heliobacteria is related more to clostridia than to the green sulfur bacteria. J Biol Chem (2010) 0.88
Dynamic proteome analysis of Cyanothece sp. ATCC 51142 under constant light. J Proteome Res (2011) 0.87
Invariability of central metabolic flux distribution in Shewanella oneidensis MR-1 under environmental or genetic perturbations. Biotechnol Prog (2009) 0.86
Investigating xylose metabolism in recombinant Saccharomyces cerevisiae via 13C metabolic flux analysis. Microb Cell Fact (2013) 0.86
Better living through cyanothece - unicellular diazotrophic cyanobacteria with highly versatile metabolic systems. Adv Exp Med Biol (2010) 0.85