Published in Biotechnol Bioeng on March 01, 2014
Methods and advances in metabolic flux analysis: a mini-review. J Ind Microbiol Biotechnol (2015) 0.95
A Method to Constrain Genome-Scale Models with 13C Labeling Data. PLoS Comput Biol (2015) 0.90
NADPH-generating systems in bacteria and archaea. Front Microbiol (2015) 0.86
Systems metabolic engineering design: fatty acid production as an emerging case study. Biotechnol Bioeng (2014) 0.85
OpenFLUX2: (13)C-MFA modeling software package adjusted for the comprehensive analysis of single and parallel labeling experiments. Microb Cell Fact (2014) 0.84
Biofuel production: an odyssey from metabolic engineering to fermentation scale-up. Front Microbiol (2014) 0.80
Decoding how a soil bacterium extracts building blocks and metabolic energy from ligninolysis provides road map for lignin valorization. Proc Natl Acad Sci U S A (2016) 0.80
Elucidation of the co-metabolism of glycerol and glucose in Escherichia coli by genetic engineering, transcription profiling, and (13)C metabolic flux analysis. Biotechnol Biofuels (2016) 0.79
Evolution of E. coli on [U-13C]Glucose Reveals a Negligible Isotopic Influence on Metabolism and Physiology. PLoS One (2016) 0.79
Elucidation of intrinsic biosynthesis yields using 13C-based metabolism analysis. Microb Cell Fact (2014) 0.78
Rapid Prediction of Bacterial Heterotrophic Fluxomics Using Machine Learning and Constraint Programming. PLoS Comput Biol (2016) 0.78
An ancient Chinese wisdom for metabolic engineering: Yin-Yang. Microb Cell Fact (2015) 0.77
Examining Escherichia coli glycolytic pathways, catabolite repression, and metabolite channeling using Δpfk mutants. Biotechnol Biofuels (2016) 0.77
Activation of the Glutamic Acid-Dependent Acid Resistance System in Escherichia coli BL21(DE3) Leads to Increase of the Fatty Acid Biotransformation Activity. PLoS One (2016) 0.75
WUFlux: an open-source platform for (13)C metabolic flux analysis of bacterial metabolism. BMC Bioinformatics (2016) 0.75
Metabolic network capacity of Escherichia coli for Krebs cycle-dependent proline hydroxylation. Microb Cell Fact (2015) 0.75
Integrated isotope-assisted metabolomics and (13)C metabolic flux analysis reveals metabolic flux redistribution for high glucoamylase production by Aspergillus niger. Microb Cell Fact (2015) 0.75
(13)C-Metabolic Flux Analysis: An Accurate Approach to Demystify Microbial Metabolism for Biochemical Production. Bioengineering (Basel) (2015) 0.75
Aldehyde dehydrogenase 1-positive cancer stem cells mediate metastasis and poor clinical outcome in inflammatory breast cancer. Clin Cancer Res (2009) 4.47
Microbial engineering for the production of advanced biofuels. Nature (2012) 3.60
Quantitative selection of DNA aptamers through microfluidic selection and high-throughput sequencing. Proc Natl Acad Sci U S A (2010) 2.01
Metabolic syndrome is associated with better nutritional status, but not with cardiovascular disease or all-cause mortality in patients on haemodialysis. Arch Cardiovasc Dis (2012) 1.99
Micromagnetic selection of aptamers in microfluidic channels. Proc Natl Acad Sci U S A (2009) 1.66
Aptamer-functionalized Au nanoparticles for the amplified optical detection of thrombin. J Am Chem Soc (2004) 1.64
Continuous, real-time monitoring of cocaine in undiluted blood serum via a microfluidic, electrochemical aptamer-based sensor. J Am Chem Soc (2009) 1.63
Community-wide assessment of protein-interface modeling suggests improvements to design methodology. J Mol Biol (2011) 1.40
Optimization of electrochemical aptamer-based sensors via optimization of probe packing density and surface chemistry. Langmuir (2008) 1.40
High specificity, electrochemical sandwich assays based on single aptamer sequences and suitable for the direct detection of small-molecule targets in blood and other complex matrices. J Am Chem Soc (2009) 1.38
Identification and characterization of catabolic para-nitrophenol 4-monooxygenase and para-benzoquinone reductase from Pseudomonas sp. strain WBC-3. J Bacteriol (2009) 1.37
Carbohydrate metabolism and carbon fixation in Roseobacter denitrificans OCh114. PLoS One (2009) 1.32
Colorimetric detection of DNA, small molecules, proteins, and ions using unmodified gold nanoparticles and conjugated polyelectrolytes. Proc Natl Acad Sci U S A (2010) 1.27
Engineering dynamic pathway regulation using stress-response promoters. Nat Biotechnol (2013) 1.27
Generation of highly specific aptamers via micromagnetic selection. Anal Chem (2009) 1.24
Exploring the parameter space of the coarse-grained UNRES force field by random search: selecting a transferable medium-resolution force field. J Comput Chem (2009) 1.22
Cerebrospinal fluid concentrations of gefitinib in patients with lung adenocarcinoma. Clin Lung Cancer (2012) 1.21
A ratiometric fluorescent probe based on FRET for imaging Hg2+ ions in living cells. Angew Chem Int Ed Engl (2008) 1.21
Simultaneous measurement of deep tissue blood flow and oxygenation using noncontact diffuse correlation spectroscopy flow-oximeter. Sci Rep (2013) 1.20
Chinese guidelines for the secondary prevention of ischemic stroke and transient ischemic attack 2010. CNS Neurosci Ther (2012) 1.20
Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions. Proteins (2013) 1.20
Spectral tuning of azobenzene photoswitches for biological applications. Angew Chem Int Ed Engl (2009) 1.19
"Alive" dyes as fluorescent sensors: fluorophore, mechanism, receptor and images in living cells. Chem Commun (Camb) (2010) 1.19
Increased arylhydrocarbon receptor expression offers a potential therapeutic target for pancreatic cancer. Oncogene (2002) 1.15
Characterization of the central metabolic pathways in Thermoanaerobacter sp. strain X514 via isotopomer-assisted metabolite analysis. Appl Environ Microbiol (2009) 1.14
Probing the limits of aptamer affinity with a microfluidic SELEX platform. PLoS One (2011) 1.14
Mixotrophic and photoheterotrophic metabolism in Cyanothece sp. ATCC 51142 under continuous light. Microbiology (2010) 1.14
Piwil2 expressed in various stages of cervical neoplasia is a potential complementary marker for p16. Am J Transl Res (2010) 1.13
Noncontact diffuse correlation spectroscopy for noninvasive deep tissue blood flow measurement. J Biomed Opt (2012) 1.12
TSC1/2 signaling complex is essential for peripheral naïve CD8+ T cell survival and homeostasis in mice. PLoS One (2012) 1.12
Automated and fast building of three-dimensional RNA structures. Sci Rep (2012) 1.10
Carbon metabolic pathways in phototrophic bacteria and their broader evolutionary implications. Front Microbiol (2011) 1.10
Genetic analysis of H1N1 influenza virus from throat swab samples in a microfluidic system for point-of-care diagnostics. J Am Chem Soc (2011) 1.09
Phase I trial of icotinib, a novel epidermal growth factor receptor tyrosine kinase inhibitor, in Chinese patients with non-small cell lung cancer. Chin Med J (Engl) (2011) 1.07
Optimization of a reusable, DNA pseudoknot-based electrochemical sensor for sequence-specific DNA detection in blood serum. Anal Chem (2009) 1.03
ERalpha suppresses slug expression directly by transcriptional repression. Biochem J (2008) 1.03
Derivation and validation of a prediction rule for estimating advanced colorectal neoplasm risk in average-risk Chinese. Am J Epidemiol (2012) 1.02
Process-based network decomposition reveals backbone motif structure. Proc Natl Acad Sci U S A (2010) 1.01
Separation and mass spectrometry in microbial metabolomics. Curr Opin Microbiol (2008) 1.00
In vitro selection of structure-switching, self-reporting aptamers. Proc Natl Acad Sci U S A (2010) 0.99
Photoautotrophic production of D-lactic acid in an engineered cyanobacterium. Microb Cell Fact (2013) 0.99
Selective utilization of exogenous amino acids by Dehalococcoides ethenogenes strain 195 and its effects on growth and dechlorination activity. Appl Environ Microbiol (2011) 0.98
Amplified chemiluminescence surface detection of DNA and telomerase activity using catalytic nucleic acid labels. Anal Chem (2004) 0.98
Metabolic pathway confirmation and discovery through (13)C-labeling of proteinogenic amino acids. J Vis Exp (2012) 0.98
Selection of phage-displayed peptides on live adherent cells in microfluidic channels. Proc Natl Acad Sci U S A (2011) 0.97
Characterization of a para-nitrophenol catabolic cluster in Pseudomonas sp. strain NyZ402 and construction of an engineered strain capable of simultaneously mineralizing both para- and ortho-nitrophenols. Biodegradation (2010) 0.97
Sensitive and selective amplified fluorescence DNA detection based on exonuclease III-aided target recycling. J Am Chem Soc (2010) 0.96
Incomplete Wood-Ljungdahl pathway facilitates one-carbon metabolism in organohalide-respiring Dehalococcoides mccartyi. Proc Natl Acad Sci U S A (2014) 0.96
Detection of proteins in serum by micromagnetic aptamer PCR (MAP) technology. Angew Chem Int Ed Engl (2010) 0.96
Metabolic engineering of Synechocystis sp. strain PCC 6803 for isobutanol production. Appl Environ Microbiol (2012) 0.96
An electrochemical supersandwich assay for sensitive and selective DNA detection in complex matrices. J Am Chem Soc (2010) 0.96
Integrating flux balance analysis into kinetic models to decipher the dynamic metabolism of Shewanella oneidensis MR-1. PLoS Comput Biol (2012) 0.96
Correlation of genomic and physiological traits of thermoanaerobacter species with biofuel yields. Appl Environ Microbiol (2011) 0.96
Alternative isoleucine synthesis pathway in cyanobacterial species. Microbiology (2009) 0.95
Isomeric boron-fluorine complexes with donor-acceptor architecture: strong solid/liquid fluorescence and large Stokes shift. Org Lett (2008) 0.95
Development of Synechocystis sp. PCC 6803 as a phototrophic cell factory. Mar Drugs (2013) 0.95
[A multicentre retrospective study of pulmonary mycosis clinically proven from 1998 to 2007]. Zhonghua Jie He He Hu Xi Za Zhi (2011) 0.95
Activatable rotor for quantifying lysosomal viscosity in living cells. J Am Chem Soc (2013) 0.95
Ratiometric and selective fluorescent sensor for CuII based on internal charge transfer (ICT). Org Lett (2005) 0.94
13C-MFA delineates the photomixotrophic metabolism of Synechocystis sp. PCC 6803 under light- and carbon-sufficient conditions. Biotechnol J (2014) 0.93
A novel protocol for three-dimensional structure prediction of RNA-protein complexes. Sci Rep (2013) 0.93
RNA stability under different combinations of amber force fields and solvation models. J Biomol Struct Dyn (2010) 0.92
Anti-microbial activities of aerosolized transition metal oxide nanoparticles. Chemosphere (2010) 0.92
Characterization of gene mutations and phenotypes of cystic fibrosis in Chinese patients. Respirology (2015) 0.91
Inhibition of expression of the chromatin remodeling gene, SNF2L, selectively leads to DNA damage, growth inhibition, and cancer cell death. Mol Cancer Res (2009) 0.91
Viability and metal reduction of Shewanella oneidensis MR-1 under CO2 stress: implications for ecological effects of CO2 leakage from geologic CO2 sequestration. Environ Sci Technol (2010) 0.91
Concomitant targeting of tumor cells and induction of T-cell response synergizes to effectively inhibit trastuzumab-resistant breast cancer. Cancer Res (2012) 0.90
MicrobesFlux: a web platform for drafting metabolic models from the KEGG database. BMC Syst Biol (2012) 0.90
Study of stationary phase metabolism via isotopomer analysis of amino acids from an isolated protein. Biotechnol Prog (2010) 0.90
ASPDock: protein-protein docking algorithm using atomic solvation parameters model. BMC Bioinformatics (2011) 0.90
Bacterial responses to Cu-doped TiO(2) nanoparticles. Sci Total Environ (2009) 0.90
Recent advances in mapping environmental microbial metabolisms through 13C isotopic fingerprints. J R Soc Interface (2012) 0.89
Metabolic flux analysis of the mixotrophic metabolisms in the green sulfur bacterium Chlorobaculum tepidum. J Biol Chem (2010) 0.89
Long-wavelength, photostable, two-photon excitable BODIPY fluorophores readily modifiable for molecular probes. J Org Chem (2013) 0.89
A lysosome-targetable and two-photon fluorescent probe for monitoring endogenous and exogenous nitric oxide in living cells. J Am Chem Soc (2012) 0.89
A new prodrug-derived ratiometric fluorescent probe for hypoxia: high selectivity of nitroreductase and imaging in tumor cell. Org Lett (2011) 0.88
Clinical outcome of neoadjuvant chemoradiation therapy with oxaliplatin and capecitabine or 5-fluorouracil for locally advanced rectal cancer. J Surg Oncol (2013) 0.88
Carbon flow of heliobacteria is related more to clostridia than to the green sulfur bacteria. J Biol Chem (2010) 0.88
On the binding of cationic, water-soluble conjugated polymers to DNA: electrostatic and hydrophobic interactions. J Am Chem Soc (2010) 0.87
Negative feedback regulation of fatty acid production based on a malonyl-CoA sensor-actuator. ACS Synth Biol (2014) 0.87
Targeting activation-induced cytidine deaminase overcomes tumor evasion of immunotherapy by CTLs. J Immunol (2010) 0.87
[An investigation of the relationship between Lepr gene Gln223Arg polymorphism and obstructive sleep apnea hypopnea syndrome]. Zhonghua Jie He He Hu Xi Za Zhi (2003) 0.87
Tumor gene mutations and messenger RNA expression: correlation with clinical response to icotinib hydrochloride in non-small cell lung cancer. Chin Med J (Engl) (2011) 0.87
Differential proteomic profiling reveals regulatory proteins and novel links between primary metabolism and spinosad production in Saccharopolyspora spinosa. Microb Cell Fact (2014) 0.87
The protein folding network indicates that the ultrafast folding mutant of villin headpiece subdomain has a deeper folding funnel. J Chem Phys (2011) 0.87
Selection is more intelligent than design: improving the affinity of a bivalent ligand through directed evolution. Nucleic Acids Res (2012) 0.87
Breast carcinomatous tumoral emboli can result from encircling lymphovasculogenesis rather than lymphovascular invasion. Oncotarget (2010) 0.87
Simultaneously extracting multiple parameters via fitting one single autocorrelation function curve in diffuse correlation spectroscopy. IEEE Trans Biomed Eng (2012) 0.87
i-Motif quadruplex DNA-based biosensor for distinguishing single- and multiwalled carbon nanotubes. J Am Chem Soc (2009) 0.86
The role and clinical implications of microRNAs in hepatocellular carcinoma. Sci China Life Sci (2012) 0.86
Effects of mutation, truncation, and temperature on the folding kinetics of a WW domain. J Mol Biol (2012) 0.86
Disruption of TSC1/2 signaling complex reveals a checkpoint governing thymic CD4+ CD25+ Foxp3+ regulatory T-cell development in mice. FASEB J (2013) 0.86
A phase II study of neoadjuvant chemoradiotherapy with oxaliplatin and capecitabine for rectal cancer. Cancer Lett (2011) 0.86
Proteomic analysis of membrane preparations from developing Pinus radiata compression wood. Tree Physiol (2010) 0.86
Human cytochrome P450 4F11: heterologous expression in bacteria, purification, and characterization of catalytic function. Arch Biochem Biophys (2009) 0.85
Measurement of aptamer-protein interactions with back-scattering interferometry. Anal Chem (2011) 0.85