PubRank

Limsoon Wong

Author PubWeight™ 103.18‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Classification, subtype discovery, and prediction of outcome in pediatric acute lymphoblastic leukemia by gene expression profiling. Cancer Cell 2002 11.83
2 Accomplishments and challenges in literature data mining for biology. Bioinformatics 2002 5.19
3 Exploiting indirect neighbours and topological weight to predict protein function from protein-protein interactions. Bioinformatics 2006 3.94
4 Complex discovery from weighted PPI networks. Bioinformatics 2009 2.74
5 DNAFSMiner: a web-based software toolbox to recognize two types of functional sites in DNA sequences. Bioinformatics 2004 2.42
6 A comparative study on feature selection and classification methods using gene expression profiles and proteomic patterns. Genome Inform 2002 1.90
7 An empirical comparison of several recent epistatic interaction detection methods. Bioinformatics 2011 1.70
8 Using indirect protein-protein interactions for protein complex prediction. J Bioinform Comput Biol 2008 1.52
9 Consistency, comprehensiveness, and compatibility of pathway databases. BMC Bioinformatics 2010 1.47
10 Low cytosine triphosphate synthase 2 expression renders resistance to 5-fluorouracil in colorectal cancer. Cancer Biol Ther 2011 1.45
11 Optimal gene expression analysis by microarrays. Cancer Cell 2002 1.34
12 How advancement in biological network analysis methods empowers proteomics. Proteomics 2012 1.30
13 IntPath--an integrated pathway gene relationship database for model organisms and important pathogens. BMC Syst Biol 2012 1.28
14 Comparative analysis and assessment of M. tuberculosis H37Rv protein-protein interaction datasets. BMC Genomics 2011 1.14
15 Using indirect protein interactions for the prediction of Gene Ontology functions. BMC Bioinformatics 2007 1.13
16 Data mining tools for biological sequences. J Bioinform Comput Biol 2003 1.10
17 Network-based pipeline for analyzing MS data: an application toward liver cancer. J Proteome Res 2011 1.07
18 An in-silico method for prediction of polyadenylation signals in human sequences. Genome Inform 2003 1.06
19 FIMM, a database of functional molecular immunology: update 2002. Nucleic Acids Res 2002 1.06
20 Discovery of significant rules for classifying cancer diagnosis data. Bioinformatics 2003 1.06
21 PLncDB: plant long non-coding RNA database. Bioinformatics 2013 1.05
22 Identifying good diagnostic gene groups from gene expression profiles using the concept of emerging patterns. Bioinformatics 2002 1.05
23 Increasing the reliability of protein interactomes. Drug Discov Today 2008 1.04
24 Finding consistent disease subnetworks using PFSNet. Bioinformatics 2013 1.00
25 Discovering motif pairs at interaction sites from protein sequences on a proteome-wide scale. Bioinformatics 2006 1.00
26 Using feature generation and feature selection for accurate prediction of translation initiation sites. Genome Inform 2002 0.98
27 Assessing and predicting protein interactions using both local and global network topological metrics. Genome Inform 2008 0.97
28 Random forests on Hadoop for genome-wide association studies of multivariate neuroimaging phenotypes. BMC Bioinformatics 2013 0.97
29 Stringent DDI-based prediction of H. sapiens-M. tuberculosis H37Rv protein-protein interactions. BMC Syst Biol 2013 0.96
30 Finding consistent disease subnetworks across microarray datasets. BMC Bioinformatics 2011 0.95
31 Epstein-Barr virus nuclear antigen leader protein localizes to promoters and enhancers with cell transcription factors and EBNA2. Proc Natl Acad Sci U S A 2013 0.95
32 An efficient strategy for extensive integration of diverse biological data for protein function prediction. Bioinformatics 2007 0.95
33 Simple rules underlying gene expression profiles of more than six subtypes of acute lymphoblastic leukemia (ALL) patients. Bioinformatics 2003 0.95
34 Using indirect protein-protein interactions for protein complex predication. Comput Syst Bioinformatics Conf 2007 0.94
35 MIRACH: efficient model checker for quantitative biological pathway models. Bioinformatics 2011 0.94
36 Antibody-specified B-cell epitope prediction in line with the principle of context-awareness. IEEE/ACM Trans Comput Biol Bioinform 2011 0.93
37 eCEO: an efficient Cloud Epistasis cOmputing model in genome-wide association study. Bioinformatics 2011 0.93
38 Proteomics signature profiling (PSP): a novel contextualization approach for cancer proteomics. J Proteome Res 2012 0.93
39 Improved statistical model checking methods for pathway analysis. BMC Bioinformatics 2012 0.92
40 Increasing confidence of protein-protein interactomes. Genome Inform 2006 0.91
41 Using amino acid patterns to accurately predict translation initiation sites. In Silico Biol 2004 0.90
42 Intrinsically disordered proteins aggregate at fungal cell-to-cell channels and regulate intercellular connectivity. Proc Natl Acad Sci U S A 2012 0.90
43 Protein complex prediction based on k-connected subgraphs in protein interaction network. BMC Syst Biol 2010 0.89
44 Use of extreme patient samples for outcome prediction from gene expression data. Bioinformatics 2005 0.88
45 DA 1.0: parameter estimation of biological pathways using data assimilation approach. Bioinformatics 2010 0.88
46 Accurate prediction of hot spot residues through physicochemical characteristics of amino acid sequences. Proteins 2013 0.88
47 FastTagger: an efficient algorithm for genome-wide tag SNP selection using multi-marker linkage disequilibrium. BMC Bioinformatics 2010 0.87
48 Enhancing the utility of Proteomics Signature Profiling (PSP) with Pathway Derived Subnets (PDSs), performance analysis and specialised ontologies. BMC Genomics 2013 0.87
49 Discovery of protein complexes with core-attachment structures from Tandem Affinity Purification (TAP) data. J Comput Biol 2011 0.86
50 An approach to identifying drug resistance associated mutations in bacterial strains. BMC Genomics 2012 0.86
51 The role of miRNAs in complex formation and control. Bioinformatics 2011 0.86
52 CAMBer: an approach to support comparative analysis of multiple bacterial strains. BMC Genomics 2011 0.85
53 Comparative network-based recovery analysis and proteomic profiling of neurological changes in valproic acid-treated mice. J Proteome Res 2013 0.85
54 Next generation sequencing unravels the biosynthetic ability of spearmint (Mentha spicata) peltate glandular trichomes through comparative transcriptomics. BMC Plant Biol 2014 0.85
55 Progress in computational studies of host-pathogen interactions. J Bioinform Comput Biol 2012 0.84
56 Supervised maximum-likelihood weighting of composite protein networks for complex prediction. BMC Syst Biol 2012 0.84
57 Brief overview of bioinformatics activities in Singapore. PLoS Comput Biol 2009 0.84
58 Decomposing PPI networks for complex discovery. Proteome Sci 2011 0.83
59 Wrestling with biomedical research results: language resources and literature analysis. Introduction. J Bioinform Comput Biol 2010 0.83
60 Integrating water exclusion theory into β contacts to predict binding free energy changes and binding hot spots. BMC Bioinformatics 2014 0.82
61 From the static interactome to dynamic protein complexes: Three challenges. J Bioinform Comput Biol 2015 0.82
62 A probabilistic graph-theoretic approach to integrate multiple predictions for the protein-protein subnetwork prediction challenge. Ann N Y Acad Sci 2009 0.82
63 B-cell epitope prediction through a graph model. BMC Bioinformatics 2012 0.81
64 A database of annotated promoters of genes associated with common respiratory and related diseases. Am J Respir Cell Mol Biol 2012 0.81
65 Networks in proteomics analysis of cancer. Curr Opin Biotechnol 2013 0.81
66 Discovery of small protein complexes from PPI networks with size-specific supervised weighting. BMC Syst Biol 2014 0.81
67 Temporal factors in school closure policy for mitigating the spread of influenza. J Public Health Policy 2011 0.81
68 Progressive dry-core-wet-rim hydration trend in a nested-ring topology of protein binding interfaces. BMC Bioinformatics 2012 0.81
69 Rule discovery and distance separation to detect reliable miRNA biomarkers for the diagnosis of lung squamous cell carcinoma. BMC Genomics 2014 0.80
70 LipidGO: database for lipid-related GO terms and applications. Bioinformatics 2013 0.80
71 Structural analysis of the hot spots in the binding between H1N1 HA and the 2D1 antibody: do mutations of H1N1 from 1918 to 2009 affect much on this binding? Bioinformatics 2011 0.80
72 JBCB, the first decade. J Bioinform Comput Biol 2014 0.79
73 Genome-wide analysis of regions similar to promoters of histone genes. BMC Syst Biol 2010 0.79
74 Dragon Promoter Mapper (DPM): a Bayesian framework for modelling promoter structures. Bioinformatics 2006 0.78
75 CMPF: class-switching minimized pathfinding in metabolic networks. BMC Bioinformatics 2012 0.78
76 Sirius PSB: a generic system for analysis of biological sequences. J Bioinform Comput Biol 2009 0.78
77 Detection of outlier residues for improving interface prediction in protein heterocomplexes. IEEE/ACM Trans Comput Biol Bioinform 2012 0.78
78 eCAMBer: efficient support for large-scale comparative analysis of multiple bacterial strains. BMC Bioinformatics 2014 0.78
79 Recognition of polyadenylation sites from Arabidopsis genomic sequences. Genome Inform 2007 0.77
80 Evaluating temporal factors in combined interventions of workforce shift and school closure for mitigating the spread of influenza. PLoS One 2012 0.77
81 Integrative toxicoproteomics implicates impaired mitochondrial glutathione import as an off-target effect of troglitazone. J Proteome Res 2013 0.77
82 CAMBerVis: visualization software to support comparative analysis of multiple bacterial strains. Bioinformatics 2011 0.77
83 International Conference on Genome Informatics (GIW 2013) in Singapore: Introduction to the systems biology contributions. BMC Syst Biol 2013 0.75
84 DBAC: a simple prediction method for protein binding hot spots based on burial levels and deeply buried atomic contacts. BMC Syst Biol 2011 0.75
85 Embracing noise to improve cross-batch prediction accuracy. BMC Syst Biol 2012 0.75
86 GWAMAR: genome-wide assessment of mutations associated with drug resistance in bacteria. BMC Genomics 2014 0.75
87 A network-based maximum link approach towards MS identifies potentially important roles for undetected ARRB1/2 and ACTB in liver cancer progression. Int J Bioinform Res Appl 2012 0.75
88 Structural analysis on mutation residues and interfacial water molecules for human TIM disease understanding. BMC Bioinformatics 2013 0.75
89 Structural and functional analysis of multi-interface domains. PLoS One 2012 0.75
90 Burial Level Change Defines a High Energetic Relevance for Protein Binding Interfaces. IEEE/ACM Trans Comput Biol Bioinform 2015 0.75
91 Using data fusion for scoring reliability of protein-protein interactions. J Bioinform Comput Biol 2014 0.75
92 Selection of patient samples and genes for outcome prediction. Proc IEEE Comput Syst Bioinform Conf 2004 0.75
93 Recent advances on structural bioinformatics, cell motion simulation, functional module identification, copy number variation, and protease substrate prediction and some critical comments on HMMER2. J Bioinform Comput Biol 2011 0.75
94 Coupling Graphs, Efficient Algorithms and B-Cell Epitope Prediction. IEEE/ACM Trans Comput Biol Bioinform 2015 0.75
95 Efficient mining of haplotype patterns for linkage disequilibrium mapping. J Bioinform Comput Biol 2010 0.75
96 Conservation of water molecules in protein binding interfaces. Int J Bioinform Res Appl 2012 0.75
97 Z-score biological significance of binding hot spots of protein interfaces by using crystal packing as the reference state. Biochim Biophys Acta 2012 0.75
98 A short introduction to some recent progress in phylogenetic network reconstruction, genome mapping, gene expression analysis, molecular dynamic simulation, and other problems in bioinformatics. J Bioinform Comput Biol 2012 0.75
99 Disruption of protein complexes. J Bioinform Comput Biol 2013 0.75
100 Guest Editorial for the International Conference on Genome Informatics (GIW 2013). IEEE/ACM Trans Comput Biol Bioinform 2015 0.75
101 Genome Informatics 2007. Preface. Genome Inform 2007 0.75
102 New results in biological sequence analysis, complex gene–disease association, qPCR calculation, and biological text mining. J Bioinform Comput Biol 2010 0.75
103 Finding functional promoter motifs by computational methods: a word of caution. Int J Bioinform Res Appl 2006 0.75
104 Gaps in text-based knowledge discovery for biology. Drug Discov Today 2002 0.75
105 Brief introduction to some new papers on lateral transfer reconstruction, drug candidate screening, disease gene identification, and other results. J Bioinform Comput Biol 2011 0.75
106 John Wooley and JBCB. J Bioinform Comput Biol 2015 0.75
107 ECTracker--an efficient algorithm for haplotype analysis and classification. Stud Health Technol Inform 2007 0.75
108 Introduction--some new results and tools for protein function prediction, RNA target site prediction, genotype calling, environmental genomics, and more. J Bioinform Comput Biol 2011 0.75