Published in Plant J on June 11, 2012
A quartet of PIF bHLH factors provides a transcriptionally centered signaling hub that regulates seedling morphogenesis through differential expression-patterning of shared target genes in Arabidopsis. PLoS Genet (2013) 1.73
PIFs: systems integrators in plant development. Plant Cell (2014) 1.51
Dynamic antagonism between phytochromes and PIF family basic helix-loop-helix factors induces selective reciprocal responses to light and shade in a rapidly responsive transcriptional network in Arabidopsis. Plant Cell (2012) 1.30
Combinatorial complexity in a transcriptionally centered signaling hub in Arabidopsis. Mol Plant (2014) 1.10
PHYTOCHROME INTERACTING FACTOR3 associates with the histone deacetylase HDA15 in repression of chlorophyll biosynthesis and photosynthesis in etiolated Arabidopsis seedlings. Plant Cell (2013) 1.06
The HY5-PIF regulatory module coordinates light and temperature control of photosynthetic gene transcription. PLoS Genet (2014) 1.06
Phytochrome signaling in green Arabidopsis seedlings: impact assessment of a mutually negative phyB-PIF feedback loop. Mol Plant (2012) 1.02
Photoactivated phytochromes interact with HEMERA and promote its accumulation to establish photomorphogenesis in Arabidopsis. Genes Dev (2012) 0.97
PCH1 integrates circadian and light-signaling pathways to control photoperiod-responsive growth in Arabidopsis. Elife (2016) 0.91
Phytochrome and retrograde signalling pathways converge to antagonistically regulate a light-induced transcriptional network. Nat Commun (2016) 0.85
Molecular convergence of clock and photosensory pathways through PIF3-TOC1 interaction and co-occupancy of target promoters. Proc Natl Acad Sci U S A (2016) 0.84
Plant-pathogen interaction, circadian rhythm, and hormone-related gene expression provide indicators of phytoplasma infection in Paulownia fortunei. Int J Mol Sci (2014) 0.84
Photobody Localization of Phytochrome B Is Tightly Correlated with Prolonged and Light-Dependent Inhibition of Hypocotyl Elongation in the Dark. Plant Physiol (2014) 0.84
The Transcriptional Regulator BBX19 Promotes Hypocotyl Growth by Facilitating COP1-Mediated EARLY FLOWERING3 Degradation in Arabidopsis. Plant Cell (2015) 0.84
Molecular mechanisms for mediating light-dependent nucleo/cytoplasmic partitioning of phytochrome photoreceptors. New Phytol (2014) 0.83
O-GlcNAcylation of master growth repressor DELLA by SECRET AGENT modulates multiple signaling pathways in Arabidopsis. Genes Dev (2016) 0.83
PIF1 promotes phytochrome-regulated growth under photoperiodic conditions in Arabidopsis together with PIF3, PIF4, and PIF5. J Exp Bot (2014) 0.83
A competitive peptide inhibitor KIDARI negatively regulates HFR1 by forming nonfunctional heterodimers in Arabidopsis photomorphogenesis. Mol Cells (2012) 0.80
DELLA-mediated PIF degradation contributes to coordination of light and gibberellin signalling in Arabidopsis. Nat Commun (2016) 0.79
Phytochrome B-mediated activation of lipoxygenase modulates an excess red light-induced defence response in Arabidopsis. J Exp Bot (2014) 0.79
Thermoperiodic control of hypocotyl elongation depends on auxin-induced ethylene signaling that controls downstream PHYTOCHROME INTERACTING FACTOR3 activity. Plant Physiol (2014) 0.77
Gibberellin driven growth in elf3 mutants requires PIF4 and PIF5. Plant Signal Behav (2015) 0.76
A molecular framework for seasonal growth-dormancy regulation in perennial plants. Hortic Res (2014) 0.76
The Arabidopsis O-fucosyltransferase SPINDLY activates nuclear growth repressor DELLA. Nat Chem Biol (2017) 0.75
Gene expression in plant lipid metabolism in Arabidopsis seedlings. PLoS One (2014) 0.75
Effects of Red Light Night Break Treatment on Growth and Flowering of Tomato Plants. Front Plant Sci (2016) 0.75
Comprehensive Transcriptome Analyses Reveal Differential Gene Expression Profiles of Camellia sinensis Axillary Buds at Para-, Endo-, Ecodormancy, and Bud Flush Stages. Front Plant Sci (2017) 0.75
Genomic Analysis Reveals Contrasting PIFq Contribution to Diurnal Rhythmic Gene Expression in PIF-Induced and -Repressed Genes. Front Plant Sci (2016) 0.75
The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol (2017) 0.75
Genetic Architecture of Flowering Phenology in Cereals and Opportunities for Crop Improvement. Front Plant Sci (2016) 0.75
Citrullus colocynthis NAC transcription factors CcNAC1 and CcNAC2 are involved in light and auxin signaling. Plant Cell Rep (2014) 0.75
Genome-wide analysis of basic/helix-loop-helix gene family in peanut and assessment of its roles in pod development. PLoS One (2017) 0.75
Agrobacterium tumefaciens-mediated transformation of Arabidopsis thaliana root explants by using kanamycin selection. Proc Natl Acad Sci U S A (1988) 20.72
Mutations in the gene for the red/far-red light receptor phytochrome B alter cell elongation and physiological responses throughout Arabidopsis development. Plant Cell (1993) 14.12
The hy3 Long Hypocotyl Mutant of Arabidopsis Is Deficient in Phytochrome B. Plant Cell (1991) 10.72
Isolation and Initial Characterization of Arabidopsis Mutants That Are Deficient in Phytochrome A. Plant Physiol (1993) 8.38
Rhythmic growth explained by coincidence between internal and external cues. Nature (2007) 6.05
A molecular framework for light and gibberellin control of cell elongation. Nature (2008) 5.82
Direct targeting of light signals to a promoter element-bound transcription factor. Science (2000) 5.73
Phytochrome structure and signaling mechanisms. Annu Rev Plant Biol (2006) 5.31
Light-regulated transcriptional networks in higher plants. Nat Rev Genet (2007) 4.82
Coordinated regulation of Arabidopsis thaliana development by light and gibberellins. Nature (2008) 4.71
Dependence of heterochromatic histone H3 methylation patterns on the Arabidopsis gene DDM1. Science (2002) 4.49
The kinetics of phytochrome conversion. J Biol Chem (1966) 4.05
PIFs: pivotal components in a cellular signaling hub. Trends Plant Sci (2010) 3.68
Phytochrome-mediated inhibition of shade avoidance involves degradation of growth-promoting bHLH transcription factors. Plant J (2007) 3.54
Phytochrome functions in Arabidopsis development. J Exp Bot (2010) 3.45
Photoactivated phytochrome induces rapid PIF3 phosphorylation prior to proteasome-mediated degradation. Mol Cell (2006) 3.40
Constitutive photomorphogenesis 1 and multiple photoreceptors control degradation of phytochrome interacting factor 3, a transcription factor required for light signaling in Arabidopsis. Plant Cell (2004) 3.31
Multiple phytochrome-interacting bHLH transcription factors repress premature seedling photomorphogenesis in darkness. Curr Biol (2008) 3.23
Shade avoidance. New Phytol (2008) 3.19
High temperature-mediated adaptations in plant architecture require the bHLH transcription factor PIF4. Curr Biol (2009) 3.17
The ELF4-ELF3-LUX complex links the circadian clock to diurnal control of hypocotyl growth. Nature (2011) 3.09
Decoding of light signals by plant phytochromes and their interacting proteins. Annu Rev Plant Biol (2008) 3.02
The phytochrome-interacting transcription factor, PIF3, acts early, selectively, and positively in light-induced chloroplast development. Proc Natl Acad Sci U S A (2004) 2.71
Regulation of flowering time by light quality. Nature (2003) 2.67
Phytochromes promote seedling light responses by inhibiting four negatively-acting phytochrome-interacting factors. Proc Natl Acad Sci U S A (2009) 2.61
Phytochrome Interacting Factors: central players in phytochrome-mediated light signaling networks. Trends Plant Sci (2007) 2.57
Gating of the rapid shade-avoidance response by the circadian clock in plants. Nature (2003) 2.46
Light activates the degradation of PIL5 protein to promote seed germination through gibberellin in Arabidopsis. Plant J (2006) 2.40
The Arabidopsis phytochrome-interacting factor PIF7, together with PIF3 and PIF4, regulates responses to prolonged red light by modulating phyB levels. Plant Cell (2008) 2.33
Coordination of phytochrome levels in phyB mutants of Arabidopsis as revealed by apoprotein-specific monoclonal antibodies. Genetics (1998) 2.32
Inhibition of the shade avoidance response by formation of non-DNA binding bHLH heterodimers. EMBO J (2009) 2.20
Interaction of the response regulator ARR4 with phytochrome B in modulating red light signaling. Science (2001) 2.17
Definition of early transcriptional circuitry involved in light-induced reversal of PIF-imposed repression of photomorphogenesis in young Arabidopsis seedlings. Plant Cell (2009) 2.17
A morning-specific phytohormone gene expression program underlying rhythmic plant growth. PLoS Biol (2008) 2.12
PIF1 is regulated by light-mediated degradation through the ubiquitin-26S proteasome pathway to optimize photomorphogenesis of seedlings in Arabidopsis. Plant J (2005) 2.07
Degradation of phytochrome interacting factor 3 in phytochrome-mediated light signaling. Plant Cell Physiol (2004) 2.00
Phytochrome-interacting factor 4 (PIF4) regulates auxin biosynthesis at high temperature. Proc Natl Acad Sci U S A (2011) 2.00
PIF3 regulates anthocyanin biosynthesis in an HY5-dependent manner with both factors directly binding anthocyanin biosynthetic gene promoters in Arabidopsis. Plant J (2007) 1.96
Isolation and characterization of phyC mutants in Arabidopsis reveals complex crosstalk between phytochrome signaling pathways. Plant Cell (2003) 1.90
PIF1 directly and indirectly regulates chlorophyll biosynthesis to optimize the greening process in Arabidopsis. Proc Natl Acad Sci U S A (2008) 1.89
Light-induced phosphorylation and degradation of the negative regulator PHYTOCHROME-INTERACTING FACTOR1 from Arabidopsis depend upon its direct physical interactions with photoactivated phytochromes. Plant Cell (2008) 1.86
Phytochrome induces rapid PIF5 phosphorylation and degradation in response to red-light activation. Plant Physiol (2007) 1.83
The basic helix-loop-helix transcription factor PIF5 acts on ethylene biosynthesis and phytochrome signaling by distinct mechanisms. Plant Cell (2007) 1.73
phyA dominates in transduction of red-light signals to rapidly responding genes at the initiation of Arabidopsis seedling de-etiolation. Plant J (2006) 1.64
A Link between circadian-controlled bHLH factors and the APRR1/TOC1 quintet in Arabidopsis thaliana. Plant Cell Physiol (2003) 1.63
Hormonal regulation of temperature-induced growth in Arabidopsis. Plant J (2009) 1.61
Mechanistic duality of transcription factor function in phytochrome signaling. Proc Natl Acad Sci U S A (2008) 1.60
Arabidopsis PHYTOCHROME INTERACTING FACTOR proteins promote phytochrome B polyubiquitination by COP1 E3 ligase in the nucleus. Plant Cell (2010) 1.59
Light-regulated nuclear localization of phytochromes. Curr Opin Plant Biol (2004) 1.58
The circadian clock regulates the photoperiodic response of hypocotyl elongation through a coincidence mechanism in Arabidopsis thaliana. Plant Cell Physiol (2009) 1.55
Genomic analysis of circadian clock-, light-, and growth-correlated genes reveals PHYTOCHROME-INTERACTING FACTOR5 as a modulator of auxin signaling in Arabidopsis. Plant Physiol (2011) 1.34
Dynamic antagonism between phytochromes and PIF family basic helix-loop-helix factors induces selective reciprocal responses to light and shade in a rapidly responsive transcriptional network in Arabidopsis. Plant Cell (2012) 1.30
Arabidopsis thaliana life without phytochromes. Proc Natl Acad Sci U S A (2010) 1.25
Light quality-mediated petiole elongation in Arabidopsis during shade avoidance involves cell wall modification by xyloglucan endotransglucosylase/hydrolases. Plant Physiol (2010) 1.25
Dynamic properties of endogenous phytochrome A in Arabidopsis seedlings. Plant Physiol (1999) 1.21
Circadian oscillation of gibberellin signaling in Arabidopsis. Proc Natl Acad Sci U S A (2011) 1.14
An integrative model for phytochrome B mediated photomorphogenesis: from protein dynamics to physiology. PLoS One (2010) 1.12
Phytochromes. Curr Biol (2010) 1.09
Functional profiling identifies genes involved in organ-specific branches of the PIF3 regulatory network in Arabidopsis. Plant Cell (2011) 1.05
Phytochrome signaling in green Arabidopsis seedlings: impact assessment of a mutually negative phyB-PIF feedback loop. Mol Plant (2012) 1.02
Diurnal dependence of growth responses to shade in Arabidopsis: role of hormone, clock, and light signaling. Mol Plant (2012) 0.87
A molecular framework for light and gibberellin control of cell elongation. Nature (2008) 5.82
The Arabidopsis basic/helix-loop-helix transcription factor family. Plant Cell (2003) 5.68
A light-switchable gene promoter system. Nat Biotechnol (2002) 5.28
PIFs: pivotal components in a cellular signaling hub. Trends Plant Sci (2010) 3.68
Phytochrome-interacting factor 1 is a critical bHLH regulator of chlorophyll biosynthesis. Science (2004) 3.48
Phytochrome functions in Arabidopsis development. J Exp Bot (2010) 3.45
Photoactivated phytochrome induces rapid PIF3 phosphorylation prior to proteasome-mediated degradation. Mol Cell (2006) 3.40
Multiple phytochrome-interacting bHLH transcription factors repress premature seedling photomorphogenesis in darkness. Curr Biol (2008) 3.23
PIF4, a phytochrome-interacting bHLH factor, functions as a negative regulator of phytochrome B signaling in Arabidopsis. EMBO J (2002) 3.19
A novel molecular recognition motif necessary for targeting photoactivated phytochrome signaling to specific basic helix-loop-helix transcription factors. Plant Cell (2004) 3.10
Conserved MYC transcription factors play a key role in jasmonate signaling both in tomato and Arabidopsis. Genes Dev (2004) 2.89
The phytochrome-interacting transcription factor, PIF3, acts early, selectively, and positively in light-induced chloroplast development. Proc Natl Acad Sci U S A (2004) 2.71
The Arabidopsis phytochrome-interacting factor PIF7, together with PIF3 and PIF4, regulates responses to prolonged red light by modulating phyB levels. Plant Cell (2008) 2.33
Control of flowering and storage organ formation in potato by FLOWERING LOCUS T. Nature (2011) 2.32
Definition of early transcriptional circuitry involved in light-induced reversal of PIF-imposed repression of photomorphogenesis in young Arabidopsis seedlings. Plant Cell (2009) 2.17
Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana. Plant Cell (2003) 2.15
A molecular framework of light-controlled phytohormone action in Arabidopsis. Curr Biol (2012) 2.02
The FHY3 and FAR1 genes encode transposase-related proteins involved in regulation of gene expression by the phytochrome A-signaling pathway. Plant J (2003) 1.99
Identification of promoter motifs involved in the network of phytochrome A-regulated gene expression by combined analysis of genomic sequence and microarray data. Plant Physiol (2003) 1.98
Isolation and characterization of phyC mutants in Arabidopsis reveals complex crosstalk between phytochrome signaling pathways. Plant Cell (2003) 1.90
ELF4 is a phytochrome-regulated component of a negative-feedback loop involving the central oscillator components CCA1 and LHY. Plant J (2005) 1.88
Phytochrome induces rapid PIF5 phosphorylation and degradation in response to red-light activation. Plant Physiol (2007) 1.83
Expression profiling of phyB mutant demonstrates substantial contribution of other phytochromes to red-light-regulated gene expression during seedling de-etiolation. Plant J (2004) 1.79
The basic helix-loop-helix transcription factor PIF5 acts on ethylene biosynthesis and phytochrome signaling by distinct mechanisms. Plant Cell (2007) 1.73
A quartet of PIF bHLH factors provides a transcriptionally centered signaling hub that regulates seedling morphogenesis through differential expression-patterning of shared target genes in Arabidopsis. PLoS Genet (2013) 1.73
phyA dominates in transduction of red-light signals to rapidly responding genes at the initiation of Arabidopsis seedling de-etiolation. Plant J (2006) 1.64
Mechanistic duality of transcription factor function in phytochrome signaling. Proc Natl Acad Sci U S A (2008) 1.60
Control of photoperiod-regulated tuberization in potato by the Arabidopsis flowering-time gene CONSTANS. Proc Natl Acad Sci U S A (2002) 1.53
PIFs: systems integrators in plant development. Plant Cell (2014) 1.51
Genes driving potato tuber initiation and growth: identification based on transcriptional changes using the POCI array. Funct Integr Genomics (2008) 1.44
Seasonal control of tuberization in potato: conserved elements with the flowering response. Annu Rev Plant Biol (2006) 1.40
Nuclear translocation of the photoreceptor phytochrome B is necessary for its biological function in seedling photomorphogenesis. Plant J (2003) 1.39
EARLY FLOWERING 4 functions in phytochrome B-regulated seedling de-etiolation. Plant Physiol (2003) 1.38
Functional profiling reveals that only a small number of phytochrome-regulated early-response genes in Arabidopsis are necessary for optimal deetiolation. Plant Cell (2006) 1.31
Dynamic antagonism between phytochromes and PIF family basic helix-loop-helix factors induces selective reciprocal responses to light and shade in a rapidly responsive transcriptional network in Arabidopsis. Plant Cell (2012) 1.30
Naturally occurring allele diversity allows potato cultivation in northern latitudes. Nature (2013) 1.29
Arabidopsis PSEUDO-RESPONSE REGULATOR7 is a signaling intermediate in phytochrome-regulated seedling deetiolation and phasing of the circadian clock. Plant Cell (2003) 1.28
Transcriptional diversification and functional conservation between DELLA proteins in Arabidopsis. Mol Biol Evol (2010) 1.24
A specific real-time quantitative PCR detection system for event MON810 in maize YieldGard based on the 3'-transgene integration sequence. Transgenic Res (2003) 1.20
Out of the dark: how the PIFs are unmasking a dual temporal mechanism of phytochrome signalling. J Exp Bot (2007) 1.19
Interacting transcription factors from the three-amino acid loop extension superclass regulate tuber formation. Plant Physiol (2003) 1.17
Transcriptional factor interaction: a central step in DELLA function. Curr Opin Genet Dev (2008) 1.16
StGA2ox1 is induced prior to stolon swelling and controls GA levels during potato tuber development. Plant J (2007) 1.12
CYP86A33-targeted gene silencing in potato tuber alters suberin composition, distorts suberin lamellae, and impairs the periderm's water barrier function. Plant Physiol (2008) 1.11
Mutant screen distinguishes between residues necessary for light-signal perception and signal transfer by phytochrome B. PLoS Genet (2008) 1.10
Gamma carbonic anhydrases in plant mitochondria. Plant Mol Biol (2004) 1.09
Multisite light-induced phosphorylation of the transcription factor PIF3 is necessary for both its rapid degradation and concomitant negative feedback modulation of photoreceptor phyB levels in Arabidopsis. Plant Cell (2013) 1.07
Functional profiling identifies genes involved in organ-specific branches of the PIF3 regulatory network in Arabidopsis. Plant Cell (2011) 1.05
Silencing of StKCS6 in potato periderm leads to reduced chain lengths of suberin and wax compounds and increased peridermal transpiration. J Exp Bot (2008) 1.03
A feruloyl transferase involved in the biosynthesis of suberin and suberin-associated wax is required for maturation and sealing properties of potato periderm. Plant J (2010) 1.03
Interlaboratory transfer of a PCR multiplex method for simultaneous detection of four genetically modified maize lines: Bt11, MON810, T25, and GA21. J Agric Food Chem (2005) 1.02
Phytochrome signaling in green Arabidopsis seedlings: impact assessment of a mutually negative phyB-PIF feedback loop. Mol Plant (2012) 1.02
Enhancing sucrose synthase activity in transgenic potato (Solanum tuberosum L.) tubers results in increased levels of starch, ADPglucose and UDPglucose and total yield. Plant Cell Physiol (2009) 1.01
The photomorphogenesis-related mutant red1 is defective in CYP83B1, a red light-induced gene encoding a cytochrome P450 required for normal auxin homeostasis. Planta (2004) 1.00
Residues clustered in the light-sensing knot of phytochrome B are necessary for conformer-specific binding to signaling partner PIF3. PLoS Genet (2009) 1.00
Multiple insect resistance in transgenic tomato plants over-expressing two families of plant proteinase inhibitors. Plant Mol Biol (2005) 0.99
From the model to the crop: genes controlling tuber formation in potato. Curr Opin Biotechnol (2010) 0.98
The Interaction of Gibberellins and Photoperiod in the Control of Potato Tuberization. J Plant Growth Regul (2001) 0.92
Development of melting temperature-based SYBR Green I polymerase chain reaction methods for multiplex genetically modified organism detection. Anal Biochem (2003) 0.92
Gamma carbonic anhydrase like complex interact with plant mitochondrial complex I. Plant Mol Biol (2005) 0.90
PIFs get BRright: PHYTOCHROME INTERACTING FACTORs as integrators of light and hormonal signals. New Phytol (2014) 0.90
Integrative analysis of transcript and metabolite profiling data sets to evaluate the regulation of biochemical pathways during photomorphogenesis. Arch Biochem Biophys (2006) 0.88
Ectopic expression of mitochondrial gamma carbonic anhydrase 2 causes male sterility by anther indehiscence. Plant Mol Biol (2009) 0.84
A novel high-throughput in vivo molecular screen for shade avoidance mutants identifies a novel phyA mutation. J Exp Bot (2011) 0.84
Gibberellin A1 metabolism contributes to the control of photoperiod-mediated tuberization in potato. PLoS One (2011) 0.82
Phytochrome-regulated PIL1 derepression is developmentally modulated. Plant Cell Physiol (2008) 0.82
Comparative functional analysis of full-length and N-terminal fragments of phytochrome C, D and E in red light-induced signaling. New Phytol (2013) 0.80
Roles of ubiquitination in the control of phosphate starvation responses in plants(f). J Integr Plant Biol (2013) 0.80
Real-time and conventional polymerase chain reaction systems based on the metallo-carboxypeptidase inhibitor gene for specific detection and quantification of potato and tomato in processed food. J Food Prot (2003) 0.79
Jasmonate-dependent modifications of the pectin matrix during potato development function as a defense mechanism targeted by Dickeya dadantii virulence factors. Plant J (2014) 0.79
Cytokinins: determinants of sink storage ability. Curr Biol (2013) 0.78
Modulation of plant HMG-CoA reductase by protein phosphatase 2A: positive and negative control at a key node of metabolism. Plant Signal Behav (2011) 0.78
Branching of the PIF3 regulatory network in Arabidopsis: roles of PIF3-regulated MIDAs in seedling development in the dark and in response to light. Plant Signal Behav (2012) 0.76
Harry Smith--recipient of the 2008 Molecular Ecology Prize. Mol Ecol (2009) 0.75