Published in ISME J on March 15, 2012
Small genomes and sparse metabolisms of sediment-associated bacteria from four candidate phyla. MBio (2013) 1.70
The reduced genomes of Parcubacteria (OD1) contain signatures of a symbiotic lifestyle. Front Microbiol (2015) 1.13
Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer. ISME J (2014) 1.12
Bacterial diversity along a 2600 km river continuum. Environ Microbiol (2015) 1.11
Microbial community composition and diversity via 16S rRNA gene amplicons: evaluating the illumina platform. PLoS One (2015) 1.04
Unveiling distribution patterns of freshwater phytoplankton by a next generation sequencing based approach. PLoS One (2013) 1.03
Illuminating microbial dark matter in meromictic Sakinaw Lake. Appl Environ Microbiol (2014) 1.03
Productivity and salinity structuring of the microplankton revealed by comparative freshwater metagenomics. Environ Microbiol (2013) 0.95
Surprising prokaryotic and eukaryotic diversity, community structure and biogeography of Ethiopian soda lakes. PLoS One (2013) 0.92
Phylogenetic shifts of bacterioplankton community composition along the Pearl Estuary: the potential impact of hypoxia and nutrients. Front Microbiol (2015) 0.88
Phylogeny and physiology of candidate phylum 'Atribacteria' (OP9/JS1) inferred from cultivation-independent genomics. ISME J (2015) 0.86
Bacterial and phytoplankton responses to nutrient amendments in a boreal lake differ according to season and to taxonomic resolution. PLoS One (2012) 0.81
Resistant microbial cooccurrence patterns inferred by network topology. Appl Environ Microbiol (2015) 0.81
Methylophaga and Hyphomicrobium can be used as target genera in monitoring saline water methanol-utilizing denitrification. J Ind Microbiol Biotechnol (2016) 0.77
Metagenomic insights into strategies of aerobic and anaerobic carbon and nitrogen transformation in boreal lakes. Sci Rep (2015) 0.77
Large Differences in Bacterial Community Composition among Three Nearby Extreme Waterbodies of the High Andean Plateau. Front Microbiol (2016) 0.76
Connectivity to the surface determines diversity patterns in subsurface aquifers of the Fennoscandian shield. ISME J (2016) 0.76
Permeable Reactive Barriers Designed To Mitigate Eutrophication Alter Bacterial Community Composition and Aquifer Redox Conditions. Appl Environ Microbiol (2015) 0.76
Bacterial Community Composition and Dynamics Spanning Five Years in Freshwater Bog Lakes. mSphere (2017) 0.76
Allochthonous carbon is a major regulator to bacterial growth and community composition in subarctic freshwaters. Sci Rep (2016) 0.75
Unusual respiratory capacity and nitrogen metabolism in a Parcubacterium (OD1) of the Candidate Phyla Radiation. Sci Rep (2017) 0.75
Novel and Unexpected Microbial Diversity in Acid Mine Drainage in Svalbard (78° N), Revealed by Culture-Independent Approaches. Microorganisms (2015) 0.75
Geological and Geochemical Controls on Subsurface Microbial Life in the Samail Ophiolite, Oman. Front Microbiol (2017) 0.75
Bacterial Communities of Three Saline Meromictic Lakes in Central Asia. PLoS One (2016) 0.75
Polycyclic Aromatic Hydrocarbon-Induced Changes in Bacterial Community Structure under Anoxic Nitrate Reducing Conditions. Front Microbiol (2016) 0.75
Bacterial community composition in three freshwater reservoirs of different alkalinity and trophic status. PLoS One (2014) 0.75
Sulfide-Induced Dissimilatory Nitrate Reduction to Ammonium Supports Anammox in an Open-Water Unit Process Wetland. Appl Environ Microbiol (2017) 0.75
Rapid peat accumulation favours the occurrence of both fen and bog microbial communities within a Mediterranean, free-floating peat island. Sci Rep (2017) 0.75
Novel Large Sulfur Bacteria in the Metagenomes of Groundwater-Fed Chemosynthetic Microbial Mats in the Lake Huron Basin. Front Microbiol (2017) 0.75
Unveiling microbial interactions in stratified mat communities from a warm saline shallow pond. Environ Microbiol (2017) 0.75
Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res (2003) 103.76
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol (2009) 77.55
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol (2007) 60.97
ARB: a software environment for sequence data. Nucleic Acids Res (2004) 58.27
Microbial diversity in the deep sea and the underexplored "rare biosphere". Proc Natl Acad Sci U S A (2006) 42.38
Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA. Nucleic Acids Res (1989) 19.85
Removing noise from pyrosequenced amplicons. BMC Bioinformatics (2011) 13.45
Compilation of small ribosomal subunit RNA sequences. Nucleic Acids Res (1990) 11.22
Design and evaluation of useful bacterium-specific PCR primers that amplify genes coding for bacterial 16S rRNA. Appl Environ Microbiol (1998) 8.58
Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition. Appl Environ Microbiol (2000) 5.91
Multivariate dispersion as a measure of beta diversity. Ecol Lett (2006) 5.62
Ecological networks and their fragility. Nature (2006) 4.69
Reverse methanogenesis: testing the hypothesis with environmental genomics. Science (2004) 4.42
The seasonal structure of microbial communities in the Western English Channel. Environ Microbiol (2009) 4.30
Microbial community structure and its functional implications. Nature (2009) 4.23
A guide to the natural history of freshwater lake bacteria. Microbiol Mol Biol Rev (2011) 4.06
Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea. ISME J (2011) 3.33
Freshwater methane emissions offset the continental carbon sink. Science (2011) 3.00
Carbon dioxide supersaturation in the surface waters of lakes. Science (1994) 2.64
The under-recognized dominance of Verrucomicrobia in soil bacterial communities. Soil Biol Biochem (2011) 2.42
Marine bacterial, archaeal and protistan association networks reveal ecological linkages. ISME J (2011) 2.40
Local similarity analysis reveals unique associations among marine bacterioplankton species and environmental factors. Bioinformatics (2006) 2.15
Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia. Nature (2007) 2.12
Photoassimilation of acetate and the biosynthesis of amino acids by Chlorobium thiosulphatophilum. Biochem J (1964) 1.94
Methanotrophy below pH 1 by a new Verrucomicrobia species. Nature (2007) 1.88
Sulfurimonas autotrophica gen. nov., sp. nov., a novel sulfur-oxidizing epsilon-proteobacterium isolated from hydrothermal sediments in the Mid-Okinawa Trough. Int J Syst Evol Microbiol (2003) 1.82
Members of a readily enriched beta-proteobacterial clade are common in surface waters of a humic lake. Appl Environ Microbiol (2003) 1.74
Temperature-controlled organic carbon mineralization in lake sediments. Nature (2010) 1.65
Coherent dynamics and association networks among lake bacterioplankton taxa. ISME J (2011) 1.63
Annual patterns in bacterioplankton community variability in a humic lake. Microb Ecol (2004) 1.43
Sulfurimonas paralvinellae sp. nov., a novel mesophilic, hydrogen- and sulfur-oxidizing chemolithoautotroph within the Epsilonproteobacteria isolated from a deep-sea hydrothermal vent polychaete nest, reclassification of Thiomicrospira denitrificans as Sulfurimonas denitrificans comb. nov. and emended description of the genus Sulfurimonas. Int J Syst Evol Microbiol (2006) 1.40
Measuring species richness based on microbial community fingerprints: the emperor has no clothes. Appl Environ Microbiol (2007) 1.35
The influence of habitat heterogeneity on freshwater bacterial community composition and dynamics. Environ Microbiol (2008) 1.31
A sequential study of serum bacterial DNA in patients with advanced cirrhosis and ascites. Hepatology (2004) 1.29
Grazing rates and functional diversity of uncultured heterotrophic flagellates. ISME J (2009) 1.21
Archaeal and bacterial community composition of sediment and plankton from a suboxic freshwater pond. Res Microbiol (2007) 1.12
Differential bacterial dynamics promote emergent community robustness to lake mixing: an epilimnion to hypolimnion transplant experiment. Environ Microbiol (2009) 1.03
Metagenomic analysis of the microbial community at Zodletone Spring (Oklahoma): insights into the genome of a member of the novel candidate division OD1. Appl Environ Microbiol (2005) 1.02
Euxinic freshwater hypolimnia promote bacterial endemicity in continental areas. Microb Ecol (2010) 1.01
Diversity of active chemolithoautotrophic prokaryotes in the sulfidic zone of a Black Sea pelagic redoxcline as determined by rRNA-based stable isotope probing. FEMS Microbiol Ecol (2010) 0.95
Bottom-up versus top-down control of hypo- and epilimnion free-living bacterial community structures in two neighboring freshwater lakes. Appl Environ Microbiol (2011) 0.95
Diversity and in situ quantification of Acidobacteria subdivision 1 in an acidic mining lake. FEMS Microbiol Ecol (2007) 0.90
Protistan grazing analysis by flow cytometry using prey labeled by in vivo expression of fluorescent proteins. Appl Environ Microbiol (2003) 0.90
Bacterial production in a mesohumic lake estimated from [(14)C]leucine incorporation rate. Microb Ecol (1993) 0.89
Spatiotemporal changes in the structure and composition of a less-abundant bacterial phylum (Planctomycetes) in two perialpine lakes. Appl Environ Microbiol (2011) 0.83
Stable isotope profiles of nitrogen gas indicate denitrification in oxygen-stratified humic lakes. Rapid Commun Mass Spectrom (2011) 0.79
A guide to the natural history of freshwater lake bacteria. Microbiol Mol Biol Rev (2011) 4.06
Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea. ISME J (2011) 3.33
Pyrosequencing reveals contrasting seasonal dynamics of taxa within Baltic Sea bacterioplankton communities. ISME J (2009) 2.42
Terrestrial carbon and intraspecific size-variation shape lake ecosystems. Trends Ecol Evol (2007) 2.35
Composition of freshwater bacterial communities associated with cyanobacterial blooms in four Swedish lakes. Environ Microbiol (2004) 2.18
Infrequent marine-freshwater transitions in the microbial world. Trends Microbiol (2009) 1.79
Digital quantification using amplified single-molecule detection. Nat Methods (2006) 1.66
Coherent dynamics and association networks among lake bacterioplankton taxa. ISME J (2011) 1.63
Heterotrophic bacterial growth efficiency and community structure at different natural organic carbon concentrations. Appl Environ Microbiol (2003) 1.45
Function-specific response to depletion of microbial diversity. ISME J (2010) 1.43
Role for urea in nitrification by polar marine Archaea. Proc Natl Acad Sci U S A (2012) 1.38
Novel primers for 16S rRNA-based archaeal community analyses in environmental samples. J Microbiol Methods (2010) 1.38
Nitrogenase gene amplicons from global marine surface waters are dominated by genes of non-cyanobacteria. PLoS One (2011) 1.27
Bacterial communities in Arctic fjelds of Finnish Lapland are stable but highly pH-dependent. FEMS Microbiol Ecol (2007) 1.26
A synthesis of methane emissions from 71 northern, temperate, and subtropical wetlands. Glob Chang Biol (2014) 1.26
Evaluation of 23S rRNA PCR primers for use in phylogenetic studies of bacterial diversity. Appl Environ Microbiol (2006) 1.22
An empirical evaluation of the utility of convex hull and standard ellipse areas for assessing population niche widths from stable isotope data. PLoS One (2013) 1.21
Active nitrogen-fixing heterotrophic bacteria at and below the chemocline of the central Baltic Sea. ISME J (2013) 1.21
Flavobacteria blooms in four eutrophic lakes: linking population dynamics of freshwater bacterioplankton to resource availability. Appl Environ Microbiol (2007) 1.21
Bacterial community composition in different sediments from the Eastern Mediterranean Sea: a comparison of four 16S ribosomal DNA clone libraries. Microb Ecol (2005) 1.20
Biogeography of bacterial communities exposed to progressive long-term environmental change. ISME J (2012) 1.18
The founding charter of the Genomic Observatories Network. Gigascience (2014) 1.16
Environmental influences on Vibrio populations in northern temperate and boreal coastal waters (Baltic and Skagerrak Seas). Appl Environ Microbiol (2006) 1.16
The role of Sphagnum mosses in the methane cycling of a boreal mire. Ecology (2010) 1.14
Whole-lake dissolved inorganic 13C additions reveal seasonal shifts in zooplankton diet. Ecology (2008) 1.11
High bicarbonate assimilation in the dark by Arctic bacteria. ISME J (2010) 1.09
Bacterial chitin degradation-mechanisms and ecophysiological strategies. Front Microbiol (2013) 1.09
Determining indicator taxa across spatial and seasonal gradients in the Columbia River coastal margin. ISME J (2013) 1.06
Freshwater bacterioplankton richness in oligotrophic lakes depends on nutrient availability rather than on species-area relationships. ISME J (2011) 1.05
Infrequent transitions between saline and fresh waters in one of the most abundant microbial lineages (SAR11). Mol Biol Evol (2009) 1.05
Unveiling distribution patterns of freshwater phytoplankton by a next generation sequencing based approach. PLoS One (2013) 1.03
Links between bacterial production, amino-acid utilization and community composition in productive lakes. ISME J (2007) 1.03
Effects of pesticides on community composition and activity of sediment microbes--responses at various levels of microbial community organization. Environ Pollut (2007) 1.02
Methanotrophy induces nitrogen fixation during peatland development. Proc Natl Acad Sci U S A (2013) 0.97
Productivity and salinity structuring of the microplankton revealed by comparative freshwater metagenomics. Environ Microbiol (2013) 0.95
Coastal bacterioplankton community dynamics in response to a natural disturbance. PLoS One (2013) 0.94
Effect of freeze-thaw cycles on bacterial communities of arctic tundra soil. Microb Ecol (2009) 0.94
Storage of environmental samples for guaranteeing nucleic acid yields for molecular microbiological studies. Appl Microbiol Biotechnol (2010) 0.92
High archaeal diversity in Antarctic circumpolar deep waters. Environ Microbiol Rep (2011) 0.92
Sphingobium aromaticiconvertens sp. nov., a xenobiotic-compound-degrading bacterium from polluted river sediment. Int J Syst Evol Microbiol (2007) 0.90
High ratio of bacteriochlorophyll biosynthesis genes to chlorophyll biosynthesis genes in bacteria of humic lakes. Appl Environ Microbiol (2009) 0.89
Acidobacteria dominate the active bacterial communities of Arctic tundra with widely divergent winter-time snow accumulation and soil temperatures. FEMS Microbiol Ecol (2012) 0.88
Single-cell genomics reveal low recombination frequencies in freshwater bacteria of the SAR11 clade. Genome Biol (2013) 0.87
Quinolone-resistant Escherichia coli isolated from birds of prey in Portugal are genetically distinct from those isolated from water environments and gulls in Portugal, Spain and Sweden. Environ Microbiol (2013) 0.87
Diversity of bacteria contaminating paper machines. J Ind Microbiol Biotechnol (2006) 0.87
Global phylogeography of chitinase genes in aquatic metagenomes. Appl Environ Microbiol (2010) 0.86
Disturbance induced decoupling between host genetics and composition of the associated microbiome. BMC Microbiol (2013) 0.85
Impact of trace element addition on biogas production from food industrial waste--linking process to microbial communities. FEMS Microbiol Ecol (2010) 0.84
Growth response of Vibrio cholerae and other Vibrio spp. to cyanobacterial dissolved organic matter and temperature in brackish water. FEMS Microbiol Ecol (2007) 0.84
Effect of catchment characteristics on aquatic carbon export from a boreal catchment and its importance in regional carbon cycling. Glob Chang Biol (2013) 0.84
Effects of extracellular polymeric and humic substances on chlorpyrifos bioavailability to Chironomus riparius. Ecotoxicology (2009) 0.84
Detection and quantification of Vibrio populations using denaturant gradient gel electrophoresis. J Microbiol Methods (2006) 0.82
Freezing induces biased results in the molecular detection of Flavobacterium columnare. Appl Environ Microbiol (2006) 0.82
Bacterial and phytoplankton responses to nutrient amendments in a boreal lake differ according to season and to taxonomic resolution. PLoS One (2012) 0.81
Can the black box be cracked? The augmentation of microbial ecology by high-resolution, automated sensing technologies. ISME J (2009) 0.81
A(r)Ray of hope in analysis of the function and diversity of microbial communities. Biol Bull (2003) 0.80
Stable isotope profiles of nitrogen gas indicate denitrification in oxygen-stratified humic lakes. Rapid Commun Mass Spectrom (2011) 0.79
Human dietary intake of organochlorines from Baltic herring: implications of individual fish variability and fisheries management. Ambio (2007) 0.79
Interactions with DOM and biofilms affect the fate and bioavailability of insecticides to invertebrate grazers. Ecotoxicology (2012) 0.78
Pronounced seasonal dynamics of freshwater chitinase genes and chitin processing. Environ Microbiol (2012) 0.77
Sphingomonas fennica sp. nov. and Sphingomonas haloaromaticamans sp. nov., outliers of the genus Sphingomonas. Int J Syst Evol Microbiol (2007) 0.77
Reliability of mitochondrial DNA in an acanthocephalan: the problem of pseudogenes. Int J Parasitol (2005) 0.77
Carbon speciation and composition of natural microbial communities in polluted and pristine sediments of the Eastern Mediterranean Sea. Mar Pollut Bull (2006) 0.77
Does ecosystem size determine aquatic bacterial richness? Comment. Ecology (2007) 0.77
Spatial and temporal changes in Actinobacterial dominance in experimental artificial groundwater recharge. Water Res (2008) 0.76
Mucilaginibacter frigoritolerans sp. nov., Mucilaginibacter lappiensis sp. nov. and Mucilaginibacter mallensis sp. nov., isolated from soil and lichen samples. Int J Syst Evol Microbiol (2010) 0.76
Contrasting activity patterns determined by BrdU incorporation in bacterial ribotypes from the Arctic Ocean in winter. Front Microbiol (2013) 0.76
Diversity and abundance of aromatic catabolic genes in lake sediments in response to temperature change. FEMS Microbiol Ecol (2014) 0.76
Microbial characterization of artificial sediment and comparisons with natural sediments--implications for toxicity testing. Environ Toxicol Chem (2005) 0.75
Connectivity to the surface determines diversity patterns in subsurface aquifers of the Fennoscandian shield. ISME J (2016) 0.75