Published in Mol Microbiol on June 14, 2012
Developmental biology of Streptomyces from the perspective of 100 actinobacterial genome sequences. FEMS Microbiol Rev (2013) 1.07
Bacterial Sigma Factors and Anti-Sigma Factors: Structure, Function and Distribution. Biomolecules (2015) 0.92
The actinobacterial transcription factor RbpA binds to the principal sigma subunit of RNA polymerase. Nucleic Acids Res (2013) 0.91
Redox regulation by reversible protein S-thiolation in bacteria. Front Microbiol (2015) 0.90
Thiol-based redox switches in prokaryotes. Biol Chem (2015) 0.88
Transcription Factors That Defend Bacteria Against Reactive Oxygen Species. Annu Rev Microbiol (2015) 0.86
Protein S-mycothiolation functions as redox-switch and thiol protection mechanism in Corynebacterium glutamicum under hypochlorite stress. Antioxid Redox Signal (2013) 0.84
Inference of sigma factor controlled networks by using numerical modeling applied to microarray time series data of the germinating prokaryote. Nucleic Acids Res (2013) 0.82
Global features of gene expression on the proteome and transcriptome levels in S. coelicolor during germination. PLoS One (2013) 0.80
Genome-scale analysis reveals a role for NdgR in the thiol oxidative stress response in Streptomyces coelicolor. BMC Genomics (2015) 0.79
Expanding the regulatory network governed by the extracytoplasmic function sigma factor σH in Corynebacterium glutamicum. J Bacteriol (2014) 0.78
The anti-sigma factor RsrA responds to oxidative stress by reburying its hydrophobic core. Nat Commun (2016) 0.78
SAV742, a Novel AraC-Family Regulator from Streptomyces avermitilis, Controls Avermectin Biosynthesis, Cell Growth and Development. Sci Rep (2016) 0.78
Characterization of a putative NsrR homologue in Streptomyces venezuelae reveals a new member of the Rrf2 superfamily. Sci Rep (2016) 0.77
Transcriptional Responses of the Bacterium Burkholderia terrae BS001 to the Fungal Host Lyophyllum sp. Strain Karsten under Soil-Mimicking Conditions. Microb Ecol (2016) 0.76
The Pathway-Specific Regulator ClaR of Streptomyces clavuligerus Has a Global Effect on the Expression of Genes for Secondary Metabolism and Differentiation. Appl Environ Microbiol (2015) 0.76
Simultaneous Activation of Iron- and Thiol-Based Sensor-Regulator Systems by Redox-Active Compounds. Front Microbiol (2017) 0.75
Induction of a stable sigma factor SigR by translation-inhibiting antibiotics confers resistance to antibiotics. Sci Rep (2016) 0.75
OsdR of Streptomyces coelicolor and the Dormancy Regulator DevR of Mycobacterium tuberculosis Control Overlapping Regulons. mSystems (2016) 0.75
An Alternative σ Factor, σ(8), Controls Avermectin Production and Multiple Stress Responses in Streptomyces avermitilis. Front Microbiol (2017) 0.75
Themes and variations in gene regulation by extracytoplasmic function (ECF) sigma factors. Curr Opin Microbiol (2017) 0.75
MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res (2004) 168.89
OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res (2003) 33.03
Variance stabilization applied to microarray data calibration and to the quantification of differential expression. Bioinformatics (2002) 20.59
FastTree: computing large minimum evolution trees with profiles instead of a distance matrix. Mol Biol Evol (2009) 15.15
Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Syst Biol (2007) 14.96
Cell survival responses to environmental stresses via the Keap1-Nrf2-ARE pathway. Annu Rev Pharmacol Toxicol (2007) 12.48
Protein S-nitrosylation: purview and parameters. Nat Rev Mol Cell Biol (2005) 10.65
ROS as signalling molecules: mechanisms that generate specificity in ROS homeostasis. Nat Rev Mol Cell Biol (2007) 8.10
Direct evidence that sulfhydryl groups of Keap1 are the sensors regulating induction of phase 2 enzymes that protect against carcinogens and oxidants. Proc Natl Acad Sci U S A (2002) 8.01
The integrated microbial genomes (IMG) system. Nucleic Acids Res (2006) 7.34
Unbiased location analysis of E2F1-binding sites suggests a widespread role for E2F1 in the human genome. Genome Res (2006) 6.54
Genetic ablation of Nrf2 enhances susceptibility to cigarette smoke-induced emphysema in mice. J Clin Invest (2004) 6.32
Cellular defenses against superoxide and hydrogen peroxide. Annu Rev Biochem (2008) 5.94
Identification of Nrf2-regulated genes induced by the chemopreventive agent sulforaphane by oligonucleotide microarray. Cancer Res (2002) 5.43
A novel method for accurate operon predictions in all sequenced prokaryotes. Nucleic Acids Res (2005) 4.68
Ubiquitin-like protein involved in the proteasome pathway of Mycobacterium tuberculosis. Science (2008) 4.15
UV-induced DNA damage and repair: a review. Photochem Photobiol Sci (2002) 3.76
Role of the extracytoplasmic-function sigma factor sigma(H) in Mycobacterium tuberculosis global gene expression. Mol Microbiol (2002) 2.73
RsrA, an anti-sigma factor regulated by redox change. EMBO J (1999) 2.50
Cloning, disruption, and transcriptional analysis of three RNA polymerase sigma factor genes of Streptomyces coelicolor A3(2). J Bacteriol (1990) 2.46
The alternative sigma factor SigH regulates major components of oxidative and heat stress responses in Mycobacterium tuberculosis. J Bacteriol (2001) 2.40
Antioxidants enhance mammalian proteasome expression through the Keap1-Nrf2 signaling pathway. Mol Cell Biol (2003) 2.19
Thiol-based regulatory switches. Annu Rev Genet (2003) 2.14
sigmaR, an RNA polymerase sigma factor that modulates expression of the thioredoxin system in response to oxidative stress in Streptomyces coelicolor A3(2). EMBO J (1998) 2.07
Thiol-based redox switches and gene regulation. Antioxid Redox Signal (2010) 2.07
Transcription factor Nrf2 is required for the constitutive and inducible expression of multidrug resistance-associated protein 1 in mouse embryo fibroblasts. Biochem Biophys Res Commun (2003) 2.01
The structural basis for mRNA recognition and cleavage by the ribosome-dependent endonuclease RelE. Cell (2009) 2.01
Thiol-based redox switches in eukaryotic proteins. Antioxid Redox Signal (2009) 1.97
The recA gene of Streptococcus pneumoniae is part of a competence-induced operon and controls lysogenic induction. Mol Microbiol (1995) 1.89
Biosynthesis and functions of mycothiol, the unique protective thiol of Actinobacteria. Microbiol Mol Biol Rev (2008) 1.88
Defining the disulphide stress response in Streptomyces coelicolor A3(2): identification of the sigmaR regulon. Mol Microbiol (2001) 1.85
Mechanism of guanine-specific DNA damage by oxidative stress and its role in carcinogenesis and aging. Mutat Res (2001) 1.80
Mycothiol regulates and is regulated by a thiol-specific antisigma factor RsrA and sigma(R) in Streptomyces coelicolor. Mol Microbiol (2008) 1.80
Three new RelE-homologous mRNA interferases of Escherichia coli differentially induced by environmental stresses. Mol Microbiol (2009) 1.76
Transduction of redox signaling by electrophile-protein reactions. Sci Signal (2009) 1.62
clpC and clpP1P2 gene expression in Corynebacterium glutamicum is controlled by a regulatory network involving the transcriptional regulators ClgR and HspR as well as the ECF sigma factor sigmaH. Mol Microbiol (2004) 1.54
Evolution of transcriptional regulatory circuits in bacteria. Cell (2009) 1.48
Management of oxidative stress in Bacillus. Annu Rev Microbiol (2009) 1.46
The Role of zinc in the disulphide stress-regulated anti-sigma factor RsrA from Streptomyces coelicolor. J Mol Biol (2003) 1.42
Redox-dependent changes in RsrA, an anti-sigma factor in Streptomyces coelicolor: zinc release and disulfide bond formation. J Mol Biol (2004) 1.39
Prokaryotic ubiquitin-like protein (Pup), proteasomes and pathogenesis. Nat Rev Microbiol (2009) 1.35
Transcriptional analysis of the 16S rRNA gene of the rrnD gene set of Streptomyces coelicolor A3(2). Mol Microbiol (1988) 1.31
Redox control in actinobacteria. Biochim Biophys Acta (2008) 1.30
The zinc-responsive regulator Zur controls a zinc uptake system and some ribosomal proteins in Streptomyces coelicolor A3(2). J Bacteriol (2007) 1.29
The sigma factors of Mycobacterium tuberculosis: regulation of the regulators. FEBS J (2009) 1.26
Organization and evolution of the biological response to singlet oxygen stress. J Mol Biol (2008) 1.20
Zinc-responsive regulation of alternative ribosomal protein genes in Streptomyces coelicolor involves zur and sigmaR. J Bacteriol (2007) 1.19
Genome-wide responses to carbonyl electrophiles in Bacillus subtilis: control of the thiol-dependent formaldehyde dehydrogenase AdhA and cysteine proteinase YraA by the MerR-family regulator YraB (AdhR). Mol Microbiol (2008) 1.16
Aspects of the biological redox chemistry of cysteine: from simple redox responses to sophisticated signalling pathways. Biol Chem (2006) 1.08
Reconstruction of the core and extended regulons of global transcription factors. PLoS Genet (2010) 1.06
ClgR, a novel regulator of clp and lon expression in Streptomyces. J Bacteriol (2004) 1.06
Proteomic signatures uncover thiol-specific electrophile resistance mechanisms in Bacillus subtilis. Expert Rev Proteomics (2008) 1.02
Advanced glycation end products of DNA: quantification of N2-(1-Carboxyethyl)-2'-deoxyguanosine in biological samples by liquid chromatography electrospray ionization tandem mass spectrometry. Chem Res Toxicol (2008) 1.00
The sigmaR regulon of Streptomyces coelicolor A32 reveals a key role in protein quality control during disulphide stress. Microbiology (2010) 1.00
Exploiting thiol modifications. PLoS Biol (2004) 1.00
Pupylation versus ubiquitylation: tagging for proteasome-dependent degradation. Cell Microbiol (2010) 0.97
Role of an RNA polymerase interacting protein, MsRbpA, from Mycobacterium smegmatis in phenotypic tolerance to rifampicin. Microbiology (2009) 0.96
The RNA polymerase-binding protein RbpA confers basal levels of rifampicin resistance on Streptomyces coelicolor. Mol Microbiol (2006) 0.95
Critical role of a single position in the -35 element for promoter recognition by Mycobacterium tuberculosis SigE and SigH. J Bacteriol (2008) 0.94
Positive and negative feedback regulatory loops of thiol-oxidative stress response mediated by an unstable isoform of sigmaR in actinomycetes. Mol Microbiol (2009) 0.91
chipD: a web tool to design oligonucleotide probes for high-density tiling arrays. Nucleic Acids Res (2010) 0.88
NdgR, an IclR-like regulator involved in amino-acid-dependent growth, quorum sensing, and antibiotic production in Streptomyces coelicolor. Appl Microbiol Biotechnol (2008) 0.85
Transfer-messenger RNA controls the translation of cell-cycle and stress proteins in Streptomyces. EMBO Rep (2009) 0.80
Partial purification of factors for differential transcription of the rrnD promoters for ribosomal RNA synthesis in Streptomyces coelicolor. J Microbiol (2007) 0.77
A microfluidic chemostat for experiments with bacterial and yeast cells. Nat Methods (2005) 2.91
An insect herbivore microbiome with high plant biomass-degrading capacity. PLoS Genet (2010) 2.28
Mycothiol regulates and is regulated by a thiol-specific antisigma factor RsrA and sigma(R) in Streptomyces coelicolor. Mol Microbiol (2008) 1.80
A conserved structural module regulates transcriptional responses to diverse stress signals in bacteria. Mol Cell (2007) 1.76
IscR acts as an activator in response to oxidative stress for the suf operon encoding Fe-S assembly proteins. Mol Microbiol (2006) 1.72
A transcriptional response to singlet oxygen, a toxic byproduct of photosynthesis. Proc Natl Acad Sci U S A (2005) 1.55
A reducing system of the superoxide sensor SoxR in Escherichia coli. EMBO J (2003) 1.53
Induction of the sufA operon encoding Fe-S assembly proteins by superoxide generators and hydrogen peroxide: involvement of OxyR, IHF and an unidentified oxidant-responsive factor. Mol Microbiol (2004) 1.47
Redox-dependent changes in RsrA, an anti-sigma factor in Streptomyces coelicolor: zinc release and disulfide bond formation. J Mol Biol (2004) 1.39
Graded expression of zinc-responsive genes through two regulatory zinc-binding sites in Zur. Proc Natl Acad Sci U S A (2011) 1.33
Nur, a nickel-responsive regulator of the Fur family, regulates superoxide dismutases and nickel transport in Streptomyces coelicolor. Mol Microbiol (2006) 1.29
The zinc-responsive regulator Zur controls a zinc uptake system and some ribosomal proteins in Streptomyces coelicolor A3(2). J Bacteriol (2007) 1.29
A master regulator sigmaB governs osmotic and oxidative response as well as differentiation via a network of sigma factors in Streptomyces coelicolor. Mol Microbiol (2005) 1.28
Bacterial responses to photo-oxidative stress. Nat Rev Microbiol (2009) 1.26
Interactions between the Rhodobacter sphaeroides ECF sigma factor, sigma(E), and its anti-sigma factor, ChrR. J Mol Biol (2004) 1.23
Organization and evolution of the biological response to singlet oxygen stress. J Mol Biol (2008) 1.20
Dual role of OhrR as a repressor and an activator in response to organic hydroperoxides in Streptomyces coelicolor. J Bacteriol (2007) 1.17
Differences in two Pseudomonas aeruginosa cbb3 cytochrome oxidases. Mol Microbiol (2004) 1.14
Pseudomonas aeruginosa RoxR, a response regulator related to Rhodobacter sphaeroides PrrA, activates expression of the cyanide-insensitive terminal oxidase. Mol Microbiol (2002) 1.11
Structural basis for the specialization of Nur, a nickel-specific Fur homolog, in metal sensing and DNA recognition. Nucleic Acids Res (2009) 1.09
Application of the accurate mass and time tag approach to the proteome analysis of sub-cellular fractions obtained from Rhodobacter sphaeroides 2.4.1. Aerobic and photosynthetic cell cultures. J Proteome Res (2006) 1.07
Reconstruction of the core and extended regulons of global transcription factors. PLoS Genet (2010) 1.06
H-NOX-mediated nitric oxide sensing modulates symbiotic colonization by Vibrio fischeri. Proc Natl Acad Sci U S A (2010) 1.06
Oxidant-responsive induction of the suf operon, encoding a Fe-S assembly system, through Fur and IscR in Escherichia coli. J Bacteriol (2008) 1.04
Activity of Rhodobacter sphaeroides RpoHII, a second member of the heat shock sigma factor family. J Bacteriol (2006) 1.04
Role of OxyR as a peroxide-sensing positive regulator in Streptomyces coelicolor A3(2). J Bacteriol (2002) 1.03
A computational strategy to analyze label-free temporal bottom-up proteomics data. J Proteome Res (2008) 1.02
Identification of proteins involved in formaldehyde metabolism by Rhodobacter sphaeroides. Microbiology (2008) 1.00
The pqrAB operon is responsible for paraquat resistance in Streptomyces coelicolor. J Bacteriol (2003) 1.00
Purification of Rhodobacter sphaeroides RNA polymerase and its sigma factors. Methods Enzymol (2003) 0.99
Link between the membrane-bound pyridine nucleotide transhydrogenase and glutathione-dependent processes in Rhodobacter sphaeroides. J Bacteriol (2002) 0.99
Monothiol glutaredoxin Grx5 interacts with Fe-S scaffold proteins Isa1 and Isa2 and supports Fe-S assembly and DNA integrity in mitochondria of fission yeast. Biochem Biophys Res Commun (2010) 0.99
Convergence of the transcriptional responses to heat shock and singlet oxygen stresses. PLoS Genet (2012) 0.98
Synthesis of gamma-glutamylcysteine as a major low-molecular-weight thiol in lactic acid bacteria Leuconostoc spp. Biochem Biophys Res Commun (2008) 0.98
Complete genome sequence analysis of Leuconostoc kimchii IMSNU 11154. J Bacteriol (2010) 0.97
Activation of the SoxR regulon in Streptomyces coelicolor by the extracellular form of the pigmented antibiotic actinorhodin. J Bacteriol (2010) 0.97
Nanolitre-scale crystallization using acoustic liquid-transfer technology. Acta Crystallogr D Biol Crystallogr (2012) 0.97
Comparison of aerobic and photosynthetic Rhodobacter sphaeroides 2.4.1 proteomes. J Microbiol Methods (2006) 0.97
Regulation of sigmaB by an anti- and an anti-anti-sigma factor in Streptomyces coelicolor in response to osmotic stress. J Bacteriol (2004) 0.96
iRsp1095: a genome-scale reconstruction of the Rhodobacter sphaeroides metabolic network. BMC Syst Biol (2011) 0.95
Revised sequence and annotation of the Rhodobacter sphaeroides 2.4.1 genome. J Bacteriol (2012) 0.92
Positive and negative transcriptional regulators of glutathione-dependent formaldehyde metabolism. J Bacteriol (2004) 0.91
SoxRS-mediated lipopolysaccharide modification enhances resistance against multiple drugs in Escherichia coli. J Bacteriol (2009) 0.91
Multi-domain CGFS-type glutaredoxin Grx4 regulates iron homeostasis via direct interaction with a repressor Fep1 in fission yeast. Biochem Biophys Res Commun (2011) 0.91
Positive and negative feedback regulatory loops of thiol-oxidative stress response mediated by an unstable isoform of sigmaR in actinomycetes. Mol Microbiol (2009) 0.91
Identification of genes required for recycling reducing power during photosynthetic growth. J Bacteriol (2005) 0.91
Localization and function of three monothiol glutaredoxins in Schizosaccharomyces pombe. Biochem Biophys Res Commun (2005) 0.91
Comparative study of SoxR activation by redox-active compounds. Mol Microbiol (2013) 0.89
High dose bisphenol A impairs hippocampal neurogenesis in female mice across generations. Toxicology (2012) 0.89
Activation of the global gene regulator PrrA (RegA) from Rhodobacter sphaeroides. Biochemistry (2006) 0.89
Development of the bacterial photosynthetic apparatus. Curr Opin Microbiol (2006) 0.89
Transcriptional activation of the aldehyde reductase YqhD by YqhC and its implication in glyoxal metabolism of Escherichia coli K-12. J Bacteriol (2010) 0.89
In vitro and in vivo analysis of the role of PrrA in Rhodobacter sphaeroides 2.4.1 hemA gene expression. J Bacteriol (2006) 0.88
Nickel-containing superoxide dismutase. Methods Enzymol (2002) 0.88
Glutathione reductase and a mitochondrial thioredoxin play overlapping roles in maintaining iron-sulfur enzymes in fission yeast. Eukaryot Cell (2006) 0.88
chipD: a web tool to design oligonucleotide probes for high-density tiling arrays. Nucleic Acids Res (2010) 0.88
Stereochemical features of glutathione-dependent enzymes in the Sphingobium sp. strain SYK-6 β-aryl etherase pathway. J Biol Chem (2014) 0.88
A group of sequence-related sphingomonad enzymes catalyzes cleavage of β-aryl ether linkages in lignin β-guaiacyl and β-syringyl ether dimers. Environ Sci Technol (2014) 0.88
Hierarchical regulation of photosynthesis gene expression by the oxygen-responsive PrrBA and AppA-PpsR systems of Rhodobacter sphaeroides. J Bacteriol (2008) 0.87
Proteins needed to activate a transcriptional response to the reactive oxygen species singlet oxygen. MBio (2013) 0.86
Development of a GC/Quadrupole-Orbitrap mass spectrometer, part I: design and characterization. Anal Chem (2014) 0.85
Isolation and characterization of Streptomyces coelicolor RNA polymerase, its sigma, and antisigma factors. Methods Enzymol (2003) 0.85
Identification of genes for mycothiol biosynthesis in Streptomyces coelicolor A3(2). J Microbiol (2006) 0.85
Capillary based patterning of cellular communities in laterally open channels. Anal Chem (2010) 0.85
Identification of sigmaB-dependent promoters using consensus-directed search of Streptomyces coelicolor genome. J Microbiol (2004) 0.84
Transcription factors Sp1 and Sp3 regulate expression of human ABCG2 gene and chemoresistance phenotype. Mol Cells (2013) 0.84
Determinants of redox sensitivity in RsrA, a zinc-containing anti-sigma factor for regulating thiol oxidative stress response. Nucleic Acids Res (2011) 0.84
Features of Rhodobacter sphaeroides ChrR required for stimuli to promote the dissociation of σ(E)/ChrR complexes. J Mol Biol (2011) 0.83
Accessible chromatin structure permits factors Sp1 and Sp3 to regulate human TGFBI gene expression. Biochem Biophys Res Commun (2011) 0.83
Inactivation of homocitrate synthase causes lysine auxotrophy in copper/zinc-containing superoxide dismutase-deficient yeast Schizosaccharomyces pombe. J Biol Chem (2005) 0.83
Regulation and the role of Cu,Zn-containing superoxide dismutase in cell cycle progression of Schizosaccharomyces pombe. Biochem Biophys Res Commun (2002) 0.82
Global insights into energetic and metabolic networks in Rhodobacter sphaeroides. BMC Syst Biol (2013) 0.82
Features of Rhodobacter sphaeroides CcmFH. J Bacteriol (2003) 0.81
The role and regulation of Trxl, a cytosolic thioredoxin in Schizosaccharomyces pombe. J Microbiol (2008) 0.81
Inverse regulation of Fe- and Ni-containing SOD genes by a Fur family regulator Nur through small RNA processed from 3'UTR of the sodF mRNA. Nucleic Acids Res (2013) 0.81
Proteomic characterization of the Rhodobacter sphaeroides 2.4.1 photosynthetic membrane: identification of new proteins. J Bacteriol (2007) 0.81
Microorganisms and clean energy. Nat Rev Microbiol (2006) 0.80
Mutational analysis of the C-terminal domain of the Rhodobacter sphaeroides response regulator PrrA. Microbiology (2005) 0.80
A Rhodobacter sphaeroides protein mechanistically similar to Escherichia coli DksA regulates photosynthetic growth. MBio (2014) 0.80
Transcriptional activation of the IL31 gene by NFAT and STAT6. J Leukoc Biol (2011) 0.80
Gpx1 is a stationary phase-specific thioredoxin peroxidase in fission yeast. Biochem Biophys Res Commun (2007) 0.80
Extracytoplasmic function σ factors of the widely distributed group ECF41 contain a fused regulatory domain. Microbiologyopen (2012) 0.80
Pathways involved in reductant distribution during photobiological H(2) production by Rhodobacter sphaeroides. Appl Environ Microbiol (2011) 0.79
The role of dor gene products in controlling the P2 promoter of the cytochrome c2 gene, cycA, in Rhodobacter sphaeroides. Microbiology (2004) 0.79
Thiol-independent action of mitochondrial thioredoxin to support the urea cycle of arginine biosynthesis in Schizosaccharomyces pombe. Eukaryot Cell (2008) 0.79
Signal correlations in ecological niches can shape the organization and evolution of bacterial gene regulatory networks. Adv Microb Physiol (2012) 0.78
Benzoyl coenzyme a pathway-mediated metabolism of meta-hydroxy-aromatic acids in Rhodopseudomonas palustris. J Bacteriol (2013) 0.78