Differential gene expression segregates cattle confirmed positive for bovine tuberculosis from antemortem tuberculosis test-false positive cattle originating from herds free of bovine tuberculosis.

PubWeight™: 0.77‹?›

🔗 View Article (PMC 3373196)

Published in Vet Med Int on June 04, 2012

Authors

Ailam Lim1, Juan P Steibel, Paul M Coussens, Daniel L Grooms, Steven R Bolin

Author Affiliations

1: Department of Pathobiology and Diagnostic Investigation, Michigan State University, East Lansing, MI 48824, USA.

Articles cited by this

A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res (2001) 124.61

Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol (2004) 101.91

Absolute quantification of mRNA using real-time reverse transcription polymerase chain reaction assays. J Mol Endocrinol (2000) 29.28

Normalization of cDNA microarray data. Methods (2003) 18.69

Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data. Neurosci Lett (2003) 18.34

A comparison of background correction methods for two-colour microarrays. Bioinformatics (2007) 8.59

Fundamentals of experimental design for cDNA microarrays. Nat Genet (2002) 7.49

The complete genome sequence of Mycobacterium bovis. Proc Natl Acad Sci U S A (2003) 6.79

Gene expression patterns in blood leukocytes discriminate patients with acute infections. Blood (2006) 5.05

Insights into host responses against pathogens from transcriptional profiling. Nat Rev Microbiol (2005) 4.11

Ante mortem diagnosis of tuberculosis in cattle: a review of the tuberculin tests, gamma-interferon assay and other ancillary diagnostic techniques. Res Vet Sci (2006) 3.88

Stereotyped and specific gene expression programs in human innate immune responses to bacteria. Proc Natl Acad Sci U S A (2002) 3.85

The tuberculin test. Vet Microbiol (1994) 2.42

Mycobacterium bovis infection and tuberculosis in cattle. Vet J (2002) 2.15

Managing the wildlife reservoir of Mycobacterium bovis: the Michigan, USA, experience. Vet Microbiol (2005) 1.89

The transmission of Mycobacterium bovis infection to cattle. Res Vet Sci (2003) 1.64

Bovine tuberculosis: a review of current and emerging diagnostic techniques in view of their relevance for disease control and eradication. Transbound Emerg Dis (2010) 1.62

Post mortem diagnosis of Mycobacterium bovis infection in cattle. Vet Microbiol (1994) 1.61

Assessment of defined antigens for the diagnosis of bovine tuberculosis in skin test-reactor cattle. Vet Rec (2000) 1.54

Wildlife tuberculosis in South African conservation areas: implications and challenges. Vet Microbiol (2005) 1.52

Questions and answers on design of dual-label microarrays for identifying differentially expressed genes. J Natl Cancer Inst (2003) 1.45

Development of a simple, rapid in vitro cellular assay for bovine tuberculosis based on the production of gamma interferon. Res Vet Sci (1990) 1.43

Validation of candidate bovine reference genes for use with real-time PCR. Vet Immunol Immunopathol (2006) 1.35

Clinical utility of contemporary molecular cytogenetics. Annu Rev Genomics Hum Genet (2008) 1.27

Pathogenesis and diagnosis of infections with Mycobacterium bovis in cattle. Independent Scientific Group on Cattle TB. Vet Rec (2000) 1.27

A powerful and flexible linear mixed model framework for the analysis of relative quantification RT-PCR data. Genomics (2009) 1.22

Pitfalls in the normalization of real-time polymerase chain reaction data. Basic Res Cardiol (2007) 1.17

Gene expression profiling of peripheral blood mononuclear cells from cattle infected with Mycobacterium paratuberculosis. Infect Immun (2002) 1.17

Human Mycobacterium bovis infection in ten Latin American countries. Tuberculosis (Edinb) (2008) 1.15

Gene expression profiling of the host response to Mycobacterium bovis infection in cattle. Transbound Emerg Dis (2009) 1.08

Innate gene repression associated with Mycobacterium bovis infection in cattle: toward a gene signature of disease. BMC Genomics (2007) 1.07

Evidence for a novel gene expression program in peripheral blood mononuclear cells from Mycobacterium avium subsp. paratuberculosis-infected cattle. Infect Immun (2003) 1.05

Bovine tuberculosis as a model for human tuberculosis: advantages over small animal models. Microbes Infect (2008) 1.02

Molecular signatures distinguishing active from latent tuberculosis in peripheral blood mononuclear cells, after in vitro antigenic stimulation with purified protein derivative of tuberculin (PPD) or Candida: a preliminary report. Immunol Res (2009) 1.02

Differential host gene expression in cells infected with highly pathogenic H5N1 avian influenza viruses. Vet Immunol Immunopathol (2008) 0.98

Johne's disease in cattle is associated with enhanced expression of genes encoding IL-5, GATA-3, tissue inhibitors of matrix metalloproteinases 1 and 2, and factors promoting apoptosis in peripheral blood mononuclear cells. Vet Immunol Immunopathol (2005) 0.93

Bovine tuberculosis: effect of the tuberculin skin test on in vitro interferon gamma responses. Vet Immunol Immunopathol (2010) 0.93

Rapid and transient activation of gene expression in peripheral blood mononuclear cells from Johne's disease positive cows exposed to Mycobacterium paratuberculosis in vitro. Microb Pathog (2004) 0.93

Transcriptional profiling of Francisella tularensis infected peripheral blood mononuclear cells: a predictive tool for tularemia. FEMS Immunol Med Microbiol (2008) 0.89

Bioinformatics and high throughput approach to create genomic resources for the study of bovine immunobiology. Vet Immunol Immunopathol (2002) 0.85

Gene expression profiling of peripheral blood mononuclear cells (PBMC) from Mycobacterium bovis infected cattle after in vitro antigenic stimulation with purified protein derivative of tuberculin (PPD). Vet Immunol Immunopathol (2006) 0.85

On reference designs for microarray experiments. Stat Appl Genet Mol Biol (2005) 0.85

Antigen stimulation of peripheral blood mononuclear cells from Mycobacterium bovis infected cattle yields evidence for a novel gene expression program. BMC Genomics (2008) 0.84

Blood-based assays to detect Mycobacterium bovis-infected cattle missed by tuberculin skin testing. Vet Rec (2008) 0.82

Differential expression of genes encoding CD30L and P-selectin in cattle with Johne's disease: progress toward a diagnostic gene expression signature. Vet Immunol Immunopathol (2006) 0.81

Articles by these authors

Estimation of linkage disequilibrium in four US pig breeds. BMC Genomics (2012) 1.50

Novel calicivirus identified in rabbits, Michigan, USA. Emerg Infect Dis (2009) 1.32

A powerful and flexible linear mixed model framework for the analysis of relative quantification RT-PCR data. Genomics (2009) 1.22

Longitudinal study of the distribution of Mycobacterium avium subsp. paratuberculosis in the environment of dairy herds in the Michigan Johne's disease control demonstration herd project. Can Vet J (2009) 1.07

Antigen-specific regulatory T cells in bovine paratuberculosis. Vet Immunol Immunopathol (2008) 1.05

Molecular characterization of noroviruses detected in diarrheic stools of Michigan and Wisconsin dairy calves: circulation of two distinct subgroups. Virus Res (2004) 1.03

Reassessing design and analysis of two-colour microarray experiments using mixed effects models. Comp Funct Genomics (2005) 1.02

Evaluating statistical analysis models for RNA sequencing experiments. Front Genet (2013) 1.01

Transcriptional analysis of diverse strains Mycobacterium avium subspecies paratuberculosis in primary bovine monocyte derived macrophages. Microbes Infect (2008) 1.00

A large-scale study of differential gene expression in monocyte-derived macrophages infected with several strains of Mycobacterium avium subspecies paratuberculosis. Brief Funct Genomics (2010) 0.99

Validation and application of a high fidelity mRNA linear amplification procedure for profiling gene expression. Vet Immunol Immunopathol (2005) 0.99

Gene expression profiling of monocyte-derived macrophages following infection with Mycobacterium avium subspecies avium and Mycobacterium avium subspecies paratuberculosis. Physiol Genomics (2006) 0.99

Infection of Primary Bovine Macrophages with Mycobacterium avium Subspecies paratuberculosis Suppresses Host Cell Apoptosis. Front Microbiol (2012) 0.98

Functional genomics studies of oocyte competence: evidence that reduced transcript abundance for follistatin is associated with poor developmental competence of bovine oocytes. Reproduction (2007) 0.97

Genotype imputation accuracy in a F2 pig population using high density and low density SNP panels. BMC Genet (2013) 0.96

Mycobacterium avium subspecies paratuberculosis suppresses expression of IL-12p40 and iNOS genes induced by signalling through CD40 in bovine monocyte-derived macrophages. Vet Immunol Immunopathol (2008) 0.96

Generation of a bovine oocyte cDNA library and microarray: resources for identification of genes important for follicular development and early embryogenesis. Physiol Genomics (2004) 0.94

Bovine mammary gene expression profiling using a cDNA microarray enhanced for mammary-specific transcripts. Physiol Genomics (2003) 0.94

JY-1, an oocyte-specific gene, regulates granulosa cell function and early embryonic development in cattle. Proc Natl Acad Sci U S A (2007) 0.94

An outbreak of Eastern equine encephalitis virus in free-ranging white-tailed deer in Michigan. J Wildl Dis (2007) 0.94

Methods of tagSNP selection and other variables affecting imputation accuracy in swine. BMC Genet (2013) 0.93

Options for the control of bovine leukemia virus in dairy cattle. J Am Vet Med Assoc (2014) 0.93

Development of a porcine brain cDNA library, EST database, and microarray resource. Physiol Genomics (2003) 0.90

Enhanced expression of interleukin-1alpha and tumor necrosis factor receptor-associated protein 1 in ileal tissues of cattle infected with Mycobacterium avium subsp. paratuberculosis. Infect Immun (2003) 0.89

Descriptive epidemiology of bovine tuberculosis in michigan (1975-2010): lessons learned. Vet Med Int (2011) 0.89

Polyaniline synthesis and its biosensor application. Biosens Bioelectron (2005) 0.88

Transcriptional profiling of cattle infected with Trypanosoma congolense highlights gene expression signatures underlying trypanotolerance and trypanosusceptibility. BMC Genomics (2009) 0.88

Understanding bovine trypanosomiasis and trypanotolerance: the promise of functional genomics. Vet Immunol Immunopathol (2005) 0.87

Evaluation of a human group a rotavirus assay for on-site detection of bovine rotavirus. J Clin Microbiol (2003) 0.87

Energy balance modulates colon tumor growth: Interactive roles of insulin and estrogen. Mol Carcinog (2010) 0.87

Molecular advances in QTL discovery and application in pig breeding. Trends Genet (2013) 0.86

Characterizing differential individual response to porcine reproductive and respiratory syndrome virus infection through statistical and functional analysis of gene expression. Front Genet (2013) 0.86

Comparison of PCR versus culture for detection of Mycobacterium bovis after experimental inoculation of various matrices held under environmental conditions for extended periods. Appl Environ Microbiol (2013) 0.86

Gene expression profiling of peripheral blood mononuclear cells (PBMC) from Mycobacterium bovis infected cattle after in vitro antigenic stimulation with purified protein derivative of tuberculin (PPD). Vet Immunol Immunopathol (2006) 0.85

Accuracy of estimation of genomic breeding values in pigs using low-density genotypes and imputation. G3 (Bethesda) (2014) 0.85

High titer growth of human and avian influenza viruses in an immortalized chick embryo cell line without the need for exogenous proteases. Vaccine (2008) 0.85

Fluorescence polarization assay for the detection of antibodies to Mycobacterium bovis in bovine sera. Vet Microbiol (2006) 0.84

Identification of Carcass and Meat Quality QTL in an F(2) Duroc × Pietrain Pig Resource Population Using Different Least-Squares Analysis Models. Front Genet (2011) 0.84

Generation of expressed sequence tags from a normalized porcine skeletal muscle cDNA library. Anim Biotechnol (2002) 0.84

Mycoplasmosis in ferrets. Emerg Infect Dis (2012) 0.83

Comparison of gene expression by co-cultured WC1+ gammadelta and CD4+ alphabeta T cells exhibiting a recall response to bacterial antigen. Mol Immunol (2006) 0.83

Development and testing of a high-density cDNA microarray resource for cattle. Physiol Genomics (2003) 0.83

Enhanced production of human influenza virus in PBS-12SF cells with a reduced interferon response. Hum Vaccin Immunother (2015) 0.83

Effects of positive results for Mycobacterium avium subsp paratuberculosis as determined by microbial culture of feces or antibody ELISA on results of caudal fold tuberculin test and interferon-gamma assay for tuberculosis in cattle. J Am Vet Med Assoc (2005) 0.82

Origination and consequences of bovine viral diarrhea virus diversity. Vet Clin North Am Food Anim Pract (2004) 0.82

Evaluation of QTL for carcass merit and meat quality traits in a US commercial Duroc population. Meat Sci (2012) 0.82

Gene expression profiling of peripheral mononuclear cells in lame dairy cows with foot lesions. Vet Immunol Immunopathol (2007) 0.82

Differential expression of genes encoding CD30L and P-selectin in cattle with Johne's disease: progress toward a diagnostic gene expression signature. Vet Immunol Immunopathol (2006) 0.81

Identification of novel genes associated with dominant follicle development in cattle. Reprod Fertil Dev (2007) 0.81

Relationship between Mycobacterium avium subspecies paratuberculosis, IL-1alpha, and TRAF1 in primary bovine monocyte-derived macrophages. Vet Immunol Immunopathol (2007) 0.81

Experimental induction of pulmonary fibrosis in horses with the gammaherpesvirus equine herpesvirus 5. PLoS One (2013) 0.81

Multinodular pulmonary fibrosis in five horses. J Am Vet Med Assoc (2008) 0.81

Overt Mycobacterium avium subsp. paratuberculosis Infection: An Infrequent Occurrence in Archived Tissue from False TB Reactor Cattle in Michigan, USA. Vet Med Int (2011) 0.81

Application of alternative models to identify QTL for growth traits in an F2 Duroc x Pietrain pig resource population. BMC Genet (2010) 0.80

Serologic evaluation of five unvaccinated heifers to detect herds that have cattle persistently infected with bovine viral diarrhea virus. Am J Vet Res (2002) 0.80

Hierarchical Bayesian modeling of random and residual variance-covariance matrices in bivariate mixed effects models. Biom J (2010) 0.80

Evidence that cocaine- and amphetamine-regulated transcript is a novel intraovarian regulator of follicular atresia. Endocrinology (2004) 0.80

Postnatal development of canine axial globe length measured by B-scan ultrasonography. Vet Ophthalmol (2007) 0.80

Hierarchical Bayesian modeling of heterogeneous cluster- and subject-level associations between continuous and binary outcomes in dairy production. Biom J (2012) 0.79

Microarray analysis of gene expression in blood neutrophils of parturient cows. Physiol Genomics (2004) 0.79

Selective transcriptional profiling and data analysis strategies for expression quantitative trait loci mapping in outbred F2 populations. Genetics (2008) 0.79

Fetal protection against continual exposure to bovine viral diarrhea virus following administration of a vaccine containing an inactivated bovine viral diarrhea virus fraction to cattle. Am J Vet Res (2007) 0.78

A hepadnavirus regulatory element enhances expression of a type 2 bovine viral diarrhea virus E2 protein from a bovine herpesvirus 1 vector. J Virol (2003) 0.78

Effects of glucosamine and chondroitin sulfate on mediators of osteoarthritis in cultured equine chondrocytes stimulated by use of recombinant equine interleukin-1beta. Am J Vet Res (2005) 0.77

Use of simulation modeling to estimate herd-level sensitivity, specificity, and predictive values of diagnostic tests for detection of tuberculosis in cattle. Am J Vet Res (2005) 0.77

Using human microarrays to identify differentially expressed genes associated with increased steroidogenesis in boars. Anim Biotechnol (2005) 0.76

Evaluation of two rapid assays for detecting Cryptosporidium parvum in calf feces. J Am Vet Med Assoc (2004) 0.75

Eastern equine encephalomyelitis virus infection in six captive southern cassowaries (Casuarius casuarius). J Am Vet Med Assoc (2016) 0.75

Effects of exercise on markers of venous remodeling in lungs of horses. Am J Vet Res (2013) 0.75

Outbreaks of severe enteric disease associated with Eimeria furonis infection in ferrets (Mustela putorius furo) of 3 densely populated groups. J Am Vet Med Assoc (2011) 0.75

Effect of transportation, time of sampling, and lymphocyte numbers on gamma interferon response to Mycobacterium bovis in cattle at time of slaughter. J Vet Diagn Invest (2013) 0.75

Use of sentinel serology in a Bovine viral diarrhea virus eradication program. J Vet Diagn Invest (2011) 0.75

Changes in antibiotic susceptability of Escherichia coli isolated from steers exposed to antibiotics during the early feeding period. Vet Ther (2008) 0.75

Enumeration of salmonella in feces of naturally infected pigs. Foodborne Pathog Dis (2013) 0.75

Use of whole-genome sequencing and evaluation of the apparent sensitivity and specificity of antemortem tuberculosis tests in the investigation of an unusual outbreak of Mycobacterium bovis infection in a Michigan dairy herd. J Am Vet Med Assoc (2017) 0.75

Review of the Michigan Upper Peninsula bovine viral diarrhea virus eradication project. J Am Vet Med Assoc (2013) 0.75

Innovations in food-supply veterinary medicine: the michigan state university college of veterinary medicine summer food systems fellowship program. J Vet Med Educ (2009) 0.75

Disseminated Mycobacterium haemophilum infection in an ASSAM trinket snake (Elaphe frenata). J Zoo Wildl Med (2014) 0.75

ACUTE CLINICAL LEPTOSPIROSIS (GRIPPOTYPHOSA SEROVAR) IN AN ADULT DROMEDARY CAMEL (CAMELUS DROMEDARIUS). J Zoo Wildl Med (2015) 0.75

Toxoplasma gondii in an African crested porcupine (Hystrix cristata). J Vet Diagn Invest (2007) 0.75

Effect of feeding a direct-fed microbial on total and antimicrobial-resistant fecal coliform counts in preweaned dairy calves. Am J Vet Res (2015) 0.75

Platelet function and association of bovine viral diarrhea virus with platelets of persistently infected cattle. Am J Vet Res (2005) 0.75

Detection of bovine respiratory syncytial virus infections in young dairy and beef cattle in Poland. Vet Q (2014) 0.75

Pathology in practice. Johne's disease. J Am Vet Med Assoc (2013) 0.75

Detection of interferon-γ response to tuberculosis in blood collected at commencement of exsanguination at slaughter from cattle sensitized with Mycobacterium bovis. Am J Vet Res (2012) 0.75

Evaluation of skin samples for bovine viral diarrhea virus by use of reverse transcriptase polymerase chain reaction assay after vaccination of cattle with a modified-live bovine viral diarrhea virus vaccine. Am J Vet Res (2012) 0.75

Acute anhydrous ammonia intoxication in cattle. J Vet Diagn Invest (2006) 0.75

Effect of constant exposure to cattle persistently infected with bovine viral diarrhea virus on morbidity and mortality rates and performance of feedlot cattle. J Am Vet Med Assoc (2014) 0.75