Published in BMC Genet on February 21, 2013
Genotype imputation accuracy in a F2 pig population using high density and low density SNP panels. BMC Genet (2013) 0.96
Combining family- and population-based imputation data for association analysis of rare and common variants in large pedigrees. Genet Epidemiol (2014) 0.93
Genotype imputation reference panel selection using maximal phylogenetic diversity. Genetics (2013) 0.87
Accuracy of estimation of genomic breeding values in pigs using low-density genotypes and imputation. G3 (Bethesda) (2014) 0.85
Accuracy of genotype imputation in Nelore cattle. Genet Sel Evol (2014) 0.81
Rapid screening for phenotype-genotype associations by linear transformations of genomic evaluations. BMC Bioinformatics (2014) 0.79
Accuracy of imputation using the most common sires as reference population in layer chickens. BMC Genet (2015) 0.77
Meta-analysis of genome-wide association from genomic prediction models. Anim Genet (2015) 0.75
Single-nucleotide polymorphism analysis of GH, GHR, and IGF-1 genes in minipigs. Braz J Med Biol Res (2014) 0.75
Merlin--rapid analysis of dense genetic maps using sparse gene flow trees. Nat Genet (2001) 53.16
Prediction of total genetic value using genome-wide dense marker maps. Genetics (2001) 41.25
A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase. Am J Hum Genet (2006) 28.32
A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals. Am J Hum Genet (2009) 17.80
A comparison of phasing algorithms for trios and unrelated individuals. Am J Hum Genet (2006) 12.45
Invited review: Genomic selection in dairy cattle: progress and challenges. J Dairy Sci (2009) 9.76
Genotype imputation with thousands of genomes. G3 (Bethesda) (2011) 8.77
Genotype-imputation accuracy across worldwide human populations. Am J Hum Genet (2009) 7.28
Development and characterization of a high density SNP genotyping assay for cattle. PLoS One (2009) 7.06
Design of a high density SNP genotyping assay in the pig using SNPs identified and characterized by next generation sequencing technology. PLoS One (2009) 5.26
Haplotype phasing: existing methods and new developments. Nat Rev Genet (2011) 4.66
Genomic selection using low-density marker panels. Genetics (2009) 4.01
A high-density SNP-based linkage map of the chicken genome reveals sequence features correlated with recombination rate. Genome Res (2008) 2.70
Reliability of genomic predictions across multiple populations. Genetics (2009) 2.46
Genomic evaluations with many more genotypes. Genet Sel Evol (2011) 2.34
A comparison of approaches to account for uncertainty in analysis of imputed genotypes. Genet Epidemiol (2011) 2.19
A combined long-range phasing and long haplotype imputation method to impute phase for SNP genotypes. Genet Sel Evol (2011) 1.97
Marker imputation with low-density marker panels in Dutch Holstein cattle. J Dairy Sci (2010) 1.70
Accuracy of direct genomic values derived from imputed single nucleotide polymorphism genotypes in Jersey cattle. J Dairy Sci (2010) 1.62
The sheep genome reference sequence: a work in progress. Anim Genet (2010) 1.61
Design of a bovine low-density SNP array optimized for imputation. PLoS One (2012) 1.59
Accuracy of genotype imputation in sheep breeds. Anim Genet (2011) 1.52
Estimation of linkage disequilibrium in four US pig breeds. BMC Genomics (2012) 1.50
An efficient comprehensive search algorithm for tagSNP selection using linkage disequilibrium criteria. Bioinformatics (2005) 1.48
Effect of imputing markers from a low-density chip on the reliability of genomic breeding values in Holstein populations. J Dairy Sci (2011) 1.47
Prediction of unobserved single nucleotide polymorphism genotypes of Jersey cattle using reference panels and population-based imputation algorithms. J Dairy Sci (2010) 1.38
Assessment of alternative genotyping strategies to maximize imputation accuracy at minimal cost. Genet Sel Evol (2012) 1.19
Imputation of genotypes from low- to high-density genotyping platforms and implications for genomic selection. Animal (2011) 1.11
Use of the Illumina Bovine3K BeadChip in dairy genomic evaluation. J Dairy Sci (2012) 1.07
Assessment of the swine protein-annotated oligonucleotide microarray. Anim Genet (2009) 1.03
Pedigree analysis of 5 swine breeds in the United States and the implications for genetic conservation. J Anim Sci (2010) 1.00
Short communication: Imputation performances of 3 low-density marker panels in beef and dairy cattle. J Dairy Sci (2012) 0.99
MLR-tagging: informative SNP selection for unphased genotypes based on multiple linear regression. Bioinformatics (2006) 0.93
Informative SNP selection methods based on SNP prediction. IEEE Trans Nanobioscience (2007) 0.87
The genome sequence of taurine cattle: a window to ruminant biology and evolution. Science (2009) 8.23
Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds. Science (2009) 7.64
Development and characterization of a high density SNP genotyping assay for cattle. PLoS One (2009) 7.06
A whole-genome assembly of the domestic cow, Bos taurus. Genome Biol (2009) 5.93
Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis. PLoS Biol (2010) 5.39
High-resolution haplotype block structure in the cattle genome. BMC Genet (2009) 2.35
Copy number variation of individual cattle genomes using next-generation sequencing. Genome Res (2012) 1.62
Design of a bovine low-density SNP array optimized for imputation. PLoS One (2012) 1.59
Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues. Physiol Genomics (2006) 1.58
A physical map of the bovine genome. Genome Biol (2007) 1.56
Genome-wide association analysis of thirty one production, health, reproduction and body conformation traits in contemporary U.S. Holstein cows. BMC Genomics (2011) 1.52
Estimation of linkage disequilibrium in four US pig breeds. BMC Genomics (2012) 1.50
Fine-mapping milk production quantitative trait loci on BTA6: analysis of the bovine osteopontin gene. Proc Natl Acad Sci U S A (2005) 1.29
Application of machine learning in SNP discovery. BMC Bioinformatics (2006) 1.28
Genomic regions showing copy number variations associate with resistance or susceptibility to gastrointestinal nematodes in Angus cattle. Funct Integr Genomics (2011) 1.13
Prevalence of the prion protein gene E211K variant in U.S. cattle. BMC Vet Res (2008) 1.12
Genome-wide association study for birth weight in Nellore cattle points to previously described orthologous genes affecting human and bovine height. BMC Genet (2013) 1.11
Genomic divergence of zebu and taurine cattle identified through high-density SNP genotyping. BMC Genomics (2013) 1.11
EST-PAGE--managing and analyzing EST data. Bioinformatics (2004) 1.09
Identification of a nonsense mutation in CWC15 associated with decreased reproductive efficiency in Jersey cattle. PLoS One (2013) 1.08
Unlocking the bovine genome. BMC Genomics (2009) 1.06
An atlas of bovine gene expression reveals novel distinctive tissue characteristics and evidence for improving genome annotation. Genome Biol (2010) 1.06
Genome-wide linkage analysis of global gene expression in loin muscle tissue identifies candidate genes in pigs. PLoS One (2011) 1.05
Fine mapping of copy number variations on two cattle genome assemblies using high density SNP array. BMC Genomics (2012) 1.04
Effect of sample stratification on dairy GWAS results. BMC Genomics (2012) 1.02
Reassessing design and analysis of two-colour microarray experiments using mixed effects models. Comp Funct Genomics (2005) 1.02
Evaluating statistical analysis models for RNA sequencing experiments. Front Genet (2013) 1.01
SNP-PHAGE--High throughput SNP discovery pipeline. BMC Bioinformatics (2006) 0.99
Identification of estrogen-responsive genes in the parenchyma and fat pad of the bovine mammary gland by microarray analysis. Physiol Genomics (2006) 0.99
Genotype imputation accuracy in a F2 pig population using high density and low density SNP panels. BMC Genet (2013) 0.96
Whole genome SNP discovery and analysis of genetic diversity in Turkey (Meleagris gallopavo). BMC Genomics (2012) 0.95
Genomic divergences among cattle, dog and human estimated from large-scale alignments of genomic sequences. BMC Genomics (2006) 0.93
Local inflammation as a possible mechanism of resistance to gastrointestinal nematodes in Angus heifers. Vet Parasitol (2006) 0.92
Imputation of microsatellite alleles from dense SNP genotypes for parental verification. Front Genet (2012) 0.92
Accuracy of genomic predictions in Bos indicus (Nellore) cattle. Genet Sel Evol (2014) 0.92
Genome wide CNV analysis reveals additional variants associated with milk production traits in Holsteins. BMC Genomics (2014) 0.90
Serial analysis of gene expression during elongation of the peri-implantation porcine trophectoderm (conceptus). Physiol Genomics (2004) 0.90
Assessing signatures of selection through variation in linkage disequilibrium between taurine and indicine cattle. Genet Sel Evol (2014) 0.87
Energy balance modulates colon tumor growth: Interactive roles of insulin and estrogen. Mol Carcinog (2010) 0.87
Identification of conserved regulatory elements in mammalian promoter regions: a case study using the PCK1 promoter. Genomics Proteomics Bioinformatics (2008) 0.86
Molecular advances in QTL discovery and application in pig breeding. Trends Genet (2013) 0.86
Enhanced mitochondrial complex gene function and reduced liver size may mediate improved feed efficiency of beef cattle during compensatory growth. Funct Integr Genomics (2009) 0.86
A genome-wide survey reveals a deletion polymorphism associated with resistance to gastrointestinal nematodes in Angus cattle. Funct Integr Genomics (2014) 0.86
Characterizing differential individual response to porcine reproductive and respiratory syndrome virus infection through statistical and functional analysis of gene expression. Front Genet (2013) 0.86
Accuracy of estimation of genomic breeding values in pigs using low-density genotypes and imputation. G3 (Bethesda) (2014) 0.85
Identification of Carcass and Meat Quality QTL in an F(2) Duroc × Pietrain Pig Resource Population Using Different Least-Squares Analysis Models. Front Genet (2011) 0.84
Analysis of bovine mammary gland EST and functional annotation of the Bos taurus gene index. Mamm Genome (2002) 0.84
Generation of expressed sequence tags from a normalized porcine skeletal muscle cDNA library. Anim Biotechnol (2002) 0.84
Effects of increased milking frequency on gene expression in the bovine mammary gland. BMC Genomics (2008) 0.83
Evaluation of QTL for carcass merit and meat quality traits in a US commercial Duroc population. Meat Sci (2012) 0.82
Pharmacological zinc and phytase supplementation enhance metallothionein mRNA abundance and protein concentration in newly weaned pigs. J Nutr (2004) 0.82
Gene expression profiling of peripheral mononuclear cells in lame dairy cows with foot lesions. Vet Immunol Immunopathol (2007) 0.82
Comparative transcriptome analysis of in vivo- and in vitro-produced porcine blastocysts by small amplified RNA-serial analysis of gene expression (SAR-SAGE). Mol Reprod Dev (2008) 0.82
Serial analysis of gene expression in turkey sperm storage tubules in the presence and absence of resident sperm. Biol Reprod (2003) 0.81
Application of alternative models to identify QTL for growth traits in an F2 Duroc x Pietrain pig resource population. BMC Genet (2010) 0.80
Postnatal development of canine axial globe length measured by B-scan ultrasonography. Vet Ophthalmol (2007) 0.80
Box-Cox Transformation and Random Regression Models for Fecal egg Count Data. Front Genet (2012) 0.80
Hierarchical Bayesian modeling of random and residual variance-covariance matrices in bivariate mixed effects models. Biom J (2010) 0.80
Gene expression profiling in hepatic tissue of newly weaned pigs fed pharmacological zinc and phytase supplemented diets. BMC Genomics (2008) 0.79
Transcriptome profiling of the tubular porcine conceptus identifies the differential regulation of growth and developmentally associated genes. Mol Reprod Dev (2006) 0.79
Hierarchical Bayesian modeling of heterogeneous cluster- and subject-level associations between continuous and binary outcomes in dairy production. Biom J (2012) 0.79
Selective transcriptional profiling and data analysis strategies for expression quantitative trait loci mapping in outbred F2 populations. Genetics (2008) 0.79
Rapid screening for phenotype-genotype associations by linear transformations of genomic evaluations. BMC Bioinformatics (2014) 0.79
Predicting perchlorate exposure in milk from concentrations in dairy feed. J Agric Food Chem (2007) 0.78
Differential gene expression segregates cattle confirmed positive for bovine tuberculosis from antemortem tuberculosis test-false positive cattle originating from herds free of bovine tuberculosis. Vet Med Int (2012) 0.77
Identification of quantitative trait loci affecting gastrointestinal parasite resistance in an experimental Angus population. Anim Genet (2013) 0.77
Transcriptional profiling identifies differentially expressed genes in developing turkey skeletal muscle. BMC Genomics (2011) 0.77
Imputation of microsatellite alleles from dense SNP genotypes for parentage verification across multiple Bos taurus and Bos indicus breeds. Front Genet (2013) 0.76
Genome-wide candidate regions for selective sweeps revealed through massive parallel sequencing of DNA across ten turkey populations. BMC Genet (2014) 0.75
Developmental changes in the fetal pig transcriptome. Physiol Genomics (2004) 0.75
Effects of exercise on markers of venous remodeling in lungs of horses. Am J Vet Res (2013) 0.75