Published in Front Microbiol on June 25, 2012
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A meta-analysis reveals the commonalities and differences in Arabidopsis thaliana response to different viral pathogens. PLoS One (2012) 0.94
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The fitness effects of synonymous mutations in DNA and RNA viruses. Mol Biol Evol (2011) 1.27
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A sliding window-based method to detect selective constraints in protein-coding genes and its application to RNA viruses. J Mol Evol (2002) 1.19
The rate and spectrum of spontaneous mutations in a plant RNA virus. Genetics (2010) 1.15
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Fitness declines in Tobacco etch virus upon serial bottleneck transfers. J Virol (2007) 1.11
The pleiotropic cost of host-specialization in Tobacco etch potyvirus. Infect Genet Evol (2008) 1.10
Changes in the gene expression profile of Arabidopsis thaliana after infection with Tobacco etch virus. Virol J (2008) 1.10
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Reverse-engineering the Arabidopsis thaliana transcriptional network under changing environmental conditions. Genome Biol (2009) 1.06
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Virus adaptation by manipulation of host's gene expression. PLoS One (2008) 1.06
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The evolutionary genetics of emerging plant RNA viruses. Mol Plant Microbe Interact (2011) 1.05
Adaptation of tobacco etch potyvirus to a susceptible ecotype of Arabidopsis thaliana capacitates it for systemic infection of resistant ecotypes. Philos Trans R Soc Lond B Biol Sci (2010) 1.03
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Parasites and mutational load: an experimental test of a pluralistic theory for the evolution of sex. Proc Biol Sci (2005) 0.98
Application of game theory to the interaction between plant viruses during mixed infections. J Gen Virol (2009) 0.97
Measuring selection coefficients below 10(-3): method, questions, and prospects. Genetics (2011) 0.97
Upper-limit mutation rate estimation for a plant RNA virus. Biol Lett (2009) 0.95
Simple quasispecies models for the survival-of-the-flattest effect: The role of space. J Theor Biol (2007) 0.95
A meta-analysis reveals the commonalities and differences in Arabidopsis thaliana response to different viral pathogens. PLoS One (2012) 0.94
Dynamics of the establishment of systemic Potyvirus infection: independent yet cumulative action of primary infection sites. J Virol (2012) 0.94
Contribution of recombination and selection to molecular evolution of Citrus tristeza virus. J Gen Virol (2009) 0.93
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Insights into the selective pressures restricting Pelargonium flower break virus genome variability: Evidence for host adaptation. J Virol (2006) 0.92
Experimental evolution of pseudogenization and gene loss in a plant RNA virus. Mol Biol Evol (2013) 0.91
Ultradeep sequencing analysis of population dynamics of virus escape mutants in RNAi-mediated resistant plants. Mol Biol Evol (2012) 0.91
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Hepatitis C virus and the controversial role of the interferon sensitivity determining region in the response to interferon treatment. J Med Virol (2008) 0.89
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Tempo and mode of plant RNA virus escape from RNA interference-mediated resistance. J Virol (2011) 0.88
Computational design of genomic transcriptional networks with adaptation to varying environments. Proc Natl Acad Sci U S A (2012) 0.88
Estimation of the in vivo recombination rate for a plant RNA virus. J Gen Virol (2013) 0.86
The promiscuous evolutionary history of the family Bromoviridae. J Gen Virol (2008) 0.86
Optimal viral strategies for bypassing RNA silencing. J R Soc Interface (2010) 0.86
Luria-delbruck estimation of turnip mosaic virus mutation rate in vivo. J Virol (2012) 0.86
The effect of co- and superinfection on the adaptive dynamics of vesicular stomatitis virus. Infect Genet Evol (2006) 0.85
Contribution of insertions and deletions to the variability of hepatitis C virus populations. J Gen Virol (2007) 0.85
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From hypo- to hypersuppression: effect of amino acid substitutions on the RNA-silencing suppressor activity of the Tobacco etch potyvirus HC-Pro. Genetics (2008) 0.84
Using evolutionary tools to refine the new hypervariable region 3 within the envelope 2 protein of hepatitis C virus. Infect Genet Evol (2007) 0.84
Error threshold in RNA quasispecies models with complementation. J Theor Biol (2010) 0.84
Effects of the number of genome segments on primary and systemic infections with a multipartite plant RNA virus. J Virol (2013) 0.83
Genotypic but not phenotypic historical contingency revealed by viral experimental evolution. BMC Evol Biol (2013) 0.83
Quasispecies spatial models for RNA viruses with different replication modes and infection strategies. PLoS One (2011) 0.83
Model-selection-based approach for calculating cellular multiplicity of infection during virus colonization of multi-cellular hosts. PLoS One (2013) 0.82
Network design meets in silico evolutionary biology. Biochimie (2010) 0.82
Population differentiation and selective constraints in Pelargonium line pattern virus. Virus Res (2010) 0.82
Structural discrimination of robustness in transcriptional feedforward loops for pattern formation. PLoS One (2011) 0.82
The Core/E1 domain of hepatitis C virus genotype 4a in Egypt does not contain viral mutations or strains specific for hepatocellular carcinoma. J Clin Virol (2011) 0.81
Shrinkage of genome size in a plant RNA virus upon transfer of an essential viral gene into the host genome. Genome Biol Evol (2014) 0.81
Adaptive covariation between the coat and movement proteins of prunus necrotic ringspot virus. J Virol (2006) 0.81
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Fine-tuning tomato agronomic properties by computational genome redesign. PLoS Comput Biol (2012) 0.80
Compensatory molecular evolution of HC-Pro, an RNA-silencing suppressor from a plant RNA virus. Mol Biol Evol (2009) 0.80
Fate of artificial microRNA-mediated resistance to plant viruses in mixed infections. Phytopathology (2013) 0.80
Intra-specific variability and biological relevance of P3N-PIPO protein length in potyviruses. BMC Evol Biol (2013) 0.79
Robust dynamical pattern formation from a multifunctional minimal genetic circuit. BMC Syst Biol (2010) 0.79
The causes of epistasis in genetic networks. Evolution (2011) 0.79
Genetic diversity and potential vectors and reservoirs of Cucurbit aphid-borne yellows virus in southeastern Spain. Phytopathology (2013) 0.78
Mode of selection and experimental evolution of antiviral drugs resistance in vesicular stomatitis virus. Infect Genet Evol (2005) 0.78
Relocation of the NIb gene in the tobacco etch potyvirus genome. J Virol (2014) 0.77
MicroRNA precursors are not structurally robust but plastic. Genome Biol Evol (2013) 0.77
Differences in accumulation and virulence determine the outcome of competition during Tobacco etch virus coinfection. PLoS One (2011) 0.77
Complex dynamics of defective interfering baculoviruses during serial passage in insect cells. J Biol Phys (2013) 0.77
Molecular evolution of the plant virus family Bromoviridae based on RNA3-encoded proteins. J Mol Evol (2005) 0.77
HC-Pro hypo- and hypersuppressor mutants: differences in viral siRNA accumulation in vivo and siRNA binding activity in vitro. Arch Virol (2009) 0.77
Genetic diversity of the movement and coat protein genes of South American isolates of Prunus necrotic ringspot virus. Arch Virol (2008) 0.77
Coinfection and superinfection in RNA virus populations: a selection-mutation model. Math Biosci (2003) 0.77