Published in Biopolymers on January 01, 1990
Prediction of hybridization and melting for double-stranded nucleic acids. Biophys J (2004) 5.11
Thermodynamic parameters for DNA sequences with dangling ends. Nucleic Acids Res (2000) 5.11
Factors Contributing to Aromatic Stacking in Water: Evaluation in the Context of DNA. J Am Chem Soc (2000) 2.24
Selective and Stable DNA Base Pairing without Hydrogen Bonds. J Am Chem Soc (1998) 1.24
The thermodynamic advantage of DNA oligonucleotide 'stacking hybridization' reactions: energetics of a DNA nick. Nucleic Acids Res (1997) 1.22
Mechanism of template-independent nucleotide incorporation catalyzed by a template-dependent DNA polymerase. J Mol Biol (2006) 1.14
Sequence-dependent fluorescence of cyanine dyes on microarrays. PLoS One (2011) 0.96
Hybridization properties of long nucleic acid probes for detection of variable target sequences, and development of a hybridization prediction algorithm. Nucleic Acids Res (2010) 0.89
Comparison of the sequence-dependent fluorescence of the cyanine dyes Cy3, Cy5, DyLight DY547 and DyLight DY647 on single-stranded DNA. PLoS One (2014) 0.84
Melting studies of dangling-ended DNA hairpins: effects of end length, loop sequence and biotinylation of loop bases. Nucleic Acids Res (2002) 0.82
Sequence-Dependent Fluorescence of Cy3- and Cy5-Labeled Double-Stranded DNA. Bioconjug Chem (2016) 0.75
Conformational properties of Z-forming DNA oligomers bearing terminal unpaired bases. Biophys J (1996) 0.75
Native characterization of nucleic acid motif thermodynamics via non-covalent catalysis. Nat Commun (2016) 0.75
Predicting sequence-dependent melting stability of short duplex DNA oligomers. Biopolymers (1997) 2.45
Studies of DNA dumbbells. I. Melting curves of 17 DNA dumbbells with different duplex stem sequences linked by T4 endloops: evaluation of the nearest-neighbor stacking interactions in DNA. Biopolymers (1992) 2.33
How many numbers are required to specify sequence-dependent properties of polynucleotides? Biopolymers (1992) 1.56
A semiflexible polymer model applied to loop formation in DNA hairpins. Biophys J (2001) 1.54
Hybridization of single-stranded DNA targets to immobilized complementary DNA probes: comparison of hairpin versus linear capture probes. Nucleic Acids Res (2001) 1.42
Single-turnover kinetics of helicase-catalyzed DNA unwinding monitored continuously by fluorescence energy transfer. Biochemistry (1994) 1.28
The thermodynamic advantage of DNA oligonucleotide 'stacking hybridization' reactions: energetics of a DNA nick. Nucleic Acids Res (1997) 1.22
Mutations in the B12-binding region of methionine synthase: how the protein controls methylcobalamin reactivity. Biochemistry (1996) 1.21
Melting studies of short DNA hairpins: influence of loop sequence and adjoining base pair identity on hairpin thermodynamic stability. Biopolymers (1999) 1.20
Preparation and melting of single strand circular DNA loops. Nucleic Acids Res (1985) 1.18
Studies of DNA dumbbells VII: evaluation of the next-nearest-neighbor sequence-dependent interactions in duplex DNA. Biopolymers (1999) 1.16
Influence of base-pair changes and cooperativity parameters on the melting curves of short DNAs. Biopolymers (1983) 1.12
The question of long-range allosteric transitions in DNA. Biopolymers (1997) 1.10
Analysis of melting transitions of the DNA hairpins formed from the oligomer sequences d[GGATAC(X)4GTATCC] (X = A, T, G, C). Biopolymers (1990) 1.08
Statistical thermodynamics and kinetics of DNA multiplex hybridization reactions. Biophys J (2006) 1.06
High resolution experimental and theoretical thermal denaturation studies on small overlapping restriction fragments containing the Escherichia coli lactose genetic control region. J Biol Chem (1981) 1.06
Interaction of chloroquine with linear and supercoiled DNAs. Effect on the torsional dynamics, rigidity, and twist energy parameter. Biochemistry (1988) 1.03
Sequence dependence of the free energy of B-Z junction formation in deoxyoligonucleotides. J Mol Biol (1993) 1.02
Theory agrees with experimental thermal denaturation of short DNA restriction fragments. Nature (1981) 1.00
Thermal unfolding of ribonuclease A in phosphate at neutral pH: deviations from the two-state model. Protein Sci (2001) 0.94
Studies of DNA dumbbells. III. Theoretical analysis of optical melting curves of dumbbells with a 16 base-pair duplex stem and Tn end loops (n = 2, 3, 4, 6, 8, 10, 14). Biopolymers (1992) 0.92
Melting studies of short DNA hairpins containing the universal base 5-nitroindole. Nucleic Acids Res (1999) 0.91
Thermodynamic, spectroscopic, and equilibrium binding studies of DNA sequence context effects in four 40 base pair deoxyoligonucleotides. Biochemistry (2000) 0.91
Thermodynamic, spectroscopic, and equilibrium binding studies of DNA sequence context effects in six 22-base pair deoxyoligonucleotides. Biochemistry (1999) 0.89
Studies of DNA dumbbells. IV. Preparation and melting of a DNA dumbbell with the 16 base-pair sequence 5'G-T-A-T-C-C-C-T-C-T-G-G-A-T-A-C3' linked on the ends by dodecyl chains. Biopolymers (1993) 0.89
DNA and RNA oligomer sequences from the 3' noncoding region of the chicken glutamine synthetase gene from intramolecular hairpins. Biochemistry (1996) 0.89
Heterodimer formation between Escherichia coli Rep and UvrD proteins. J Biol Chem (1993) 0.88
The role of the loop in binding of an actinomycin D analog to hairpins formed by single-stranded DNA. Arch Biochem Biophys (2000) 0.88
Sequence context and thermodynamic stability of a single base pair mismatch in short deoxyoligonucleotide duplexes. J Am Chem Soc (2001) 0.87
Studies of DNA dumbbells. VI. Analysis of optical melting curves of dumbbells with a sixteen-base pair duplex stem and end-loops of variable size and sequence. Biopolymers (1996) 0.87
Fluctuational base-pair opening in DNA at temperatures below the helix-coil transition region. Biopolymers (1982) 0.86
A semi-micromethod for the determination of the extinction coefficients of duplex and single-stranded DNA. Anal Biochem (1992) 0.86
Kinetic analysis of the pre-equilibrium steps in the self-assembly of RecA protein from Escherichia coli. J Biol Chem (1990) 0.85
Change of conformation and internal dynamics of supercoiled DNA upon binding of Escherichia coli single-strand binding protein. Biochemistry (1985) 0.84
Tetramethylammonium does not universally neutralize sequence dependent DNA stability. Nucleic Acids Res (1993) 0.83
A protein radical cage slows photolysis of methylcobalamin in methionine synthase from Escherichia coli. Bioorg Med Chem (1996) 0.82
Conformation and dynamics of a left-handed Z-DNA hairpin: studies of d(CGCGCGTTTTCGCGCG) in solution. Biochemistry (1989) 0.82
Dynamic light scattering investigations of human erythrocyte spectrin. Biochemistry (1992) 0.81
Intersegment interactions and helix-coil transition within the generalized model of polypeptide chains approach. J Chem Phys (2009) 0.80
B to Z transitions of the short DNA hairpins formed from the oligomer sequences: d[(CG)3X4(CG)3] (X = A, T, G, C). Nucleic Acids Res (1990) 0.80
DNA sequence dependence of ATP hydrolysis by RecA protein. Biochem Biophys Res Commun (1988) 0.80
Energetics of B-Z junction formation in a sixteen base-pair duplex DNA. J Mol Biol (1990) 0.79
Studies of DNA dumbbells. V. A DNA triplex formed between a 28 base-pair DNA dumbbell substrate and a 16 base linear single strand. Biopolymers (1993) 0.79
Isolation, characterization, and magnesium-induced self-association kinetics of discrete aggregates of RecA protein from Escherichia coli. Biopolymers (1996) 0.79
Competition for hydrogen-bond formation in the helix-coil transition and protein folding. Phys Rev E Stat Nonlin Soft Matter Phys (2011) 0.78
Microscopic formulation of the Zimm-Bragg model for the helix-coil transition. Phys Rev E Stat Nonlin Soft Matter Phys (2010) 0.78
Studies of DNA dumbbells. II. Construction and characterization of DNA dumbbells with a 16 base-pair duplex stem and Tn end loops (n = 2, 3, 4, 6, 8, 10, 14). Biopolymers (1992) 0.78
Stacking heterogeneity: a model for the sequence dependent melting cooperativity of duplex DNA. J Chem Phys (2007) 0.78
Structure and dynamics of M13mp19 circular single-strand DNA: effects of ionic strength. Biopolymers (1990) 0.78
Kinetic mechanism for the sequential binding of two single-stranded oligodeoxynucleotides to the Escherichia coli Rep helicase dimer. Biochemistry (1998) 0.78
Interactions of meso-tetra-(4-N-oxyethylpyridyl) porphyrin, its 3-N analog and their metallocomplexes with duplex DNA. J Biomol Struct Dyn (2001) 0.76
Melting of cross-linked DNA IV. Methods for computer modeling of total influence on DNA melting of monofunctional adducts, intrastrand and interstrand cross-links formed by molecules of an antitumor drug. J Biomol Struct Dyn (2000) 0.75
Deformational dynamics and NMR relaxation of supercoiled DNAs. Biopolymers (1985) 0.75
Two scale generalized model of polypeptide chains. J Chem Phys (2008) 0.75
The helix-coil transition in heterogeneous double stranded DNA: microcanonical method. J Chem Phys (2005) 0.75
Novel signal amplification technology with applications in DNA and protein detection systems. Biotechniques (2001) 0.75