Published in Nucleic Acids Res on May 01, 2000
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Discrimination among individual Watson-Crick base pairs at the termini of single DNA hairpin molecules. Nucleic Acids Res (2003) 2.81
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Predicting crossover generation in DNA shuffling. Proc Natl Acad Sci U S A (2001) 1.12
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Thermodynamic and kinetic characterization of antisense oligodeoxynucleotide binding to a structured mRNA. Biophys J (2002) 1.08
Predicting the success of primer extension genotyping assays using statistical modeling. Nucleic Acids Res (2002) 1.07
Statistical thermodynamics and kinetics of DNA multiplex hybridization reactions. Biophys J (2006) 1.06
Influence of secondary structure on kinetics and reaction mechanism of DNA hybridization. Nucleic Acids Res (2007) 1.05
Multi-stringency wash of partially hybridized 60-mer probes reveals that the stringency along the probe decreases with distance from the microarray surface. Nucleic Acids Res (2008) 1.05
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On the biophysics and kinetics of toehold-mediated DNA strand displacement. Nucleic Acids Res (2013) 1.03
Salt dependence of nucleic acid hairpin stability. Biophys J (2008) 1.03
Thermophoretic melting curves quantify the conformation and stability of RNA and DNA. Nucleic Acids Res (2011) 1.02
Genomorama: genome visualization and analysis. BMC Bioinformatics (2007) 0.99
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Parallel multiplex thermodynamic analysis of coaxial base stacking in DNA duplexes by oligodeoxyribonucleotide microchips. Nucleic Acids Res (2001) 0.97
Dissociation of halted T7 RNA polymerase elongation complexes proceeds via a forward-translocation mechanism. Proc Natl Acad Sci U S A (2007) 0.96
End-to-end attraction of duplex DNA. Nucleic Acids Res (2012) 0.96
Efficient RNA interference depends on global context of the target sequence: quantitative analysis of silencing efficiency using Eulerian graph representation of siRNA. Nucleic Acids Res (2004) 0.94
Direct observation of single flexible polymers using single stranded DNA(). Soft Matter (2011) 0.93
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Hybridization properties of long nucleic acid probes for detection of variable target sequences, and development of a hybridization prediction algorithm. Nucleic Acids Res (2010) 0.89
Design of nucleic acid sequences for DNA computing based on a thermodynamic approach. Nucleic Acids Res (2005) 0.89
Individual basepair stability of DNA and RNA studied by NMR-detected solvent exchange. Biophys J (2012) 0.88
Direct calibration of PICKY-designed microarrays. BMC Bioinformatics (2009) 0.88
Thermodynamic contributions of single internal rA·dA, rC·dC, rG·dG and rU·dT mismatches in RNA/DNA duplexes. Nucleic Acids Res (2010) 0.88
Contributions of stacking, preorganization, and hydrogen bonding to the thermodynamic stability of duplexes between RNA and 2'-O-methyl RNA with locked nucleic acids. Biochemistry (2009) 0.88
Comparison of solution conformations and stabilities of modified helix 69 rRNA analogs from bacteria and human. Biopolymers (2011) 0.87
Free energy estimation of short DNA duplex hybridizations. BMC Bioinformatics (2010) 0.87
Use of a multi-thermal washer for DNA microarrays simplifies probe design and gives robust genotyping assays. Nucleic Acids Res (2007) 0.86
In Vitro evaluation of Enterococcus faecalis adhesion on various endodontic medicaments. Open Dent J (2009) 0.85
Thermodynamically optimal whole-genome tiling microarray design and validation. BMC Res Notes (2016) 0.84
Shared probe design and existing microarray reanalysis using PICKY. BMC Bioinformatics (2010) 0.83
Experimental mapping of DNA duplex shape enabled by global lineshape analyses of a nucleotide-independent nitroxide probe. Nucleic Acids Res (2014) 0.83
Insights into the DNA stabilizing contributions of a bicyclic cytosine analogue: crystal structures of DNA duplexes containing 7,8-dihydropyrido [2,3-d]pyrimidin-2-one. Nucleic Acids Res (2010) 0.83
DNA base flipping by a base pair-mimic nucleoside. Nucleic Acids Res (2005) 0.82
Neighbouring bases in template influence base-pairing of isoguanine. Biochem J (2003) 0.82
Melting studies of dangling-ended DNA hairpins: effects of end length, loop sequence and biotinylation of loop bases. Nucleic Acids Res (2002) 0.82
Clamping down on weak terminal base pairs: oligonucleotides with molecular caps as fidelity-enhancing elements at the 5'- and 3'-terminal residues. Nucleic Acids Res (2004) 0.81
The energetic difference between synthesis of correct and incorrect base pairs accounts for highly accurate DNA replication. J Am Chem Soc (2013) 0.81
Transition characteristics and thermodynamic analysis of DNA duplex formation: a quantitative consideration for the extent of duplex association. Nucleic Acids Res (2000) 0.81
Development and Field Testing of a Real-Time PCR Assay for Caprine Arthritis-Encephalitis-Virus (CAEV). Open Virol J (2011) 0.81
A model of binding on DNA microarrays: understanding the combined effect of probe synthesis failure, cross-hybridization, DNA fragmentation and other experimental details of affymetrix arrays. BMC Genomics (2012) 0.79
Pyrrolidinyl peptide nucleic acid with α/β-peptide backbone: A conformationally constrained PNA with unusual hybridization properties. Artif DNA PNA XNA (2011) 0.79
Periodontal health status in patients treated with the Invisalign(®) system and fixed orthodontic appliances: A 3 months clinical and microbiological evaluation. Eur J Dent (2015) 0.79
Whole-genome thermodynamic analysis reduces siRNA off-target effects. PLoS One (2013) 0.79
Modeling formamide denaturation of probe-target hybrids for improved microarray probe design in microbial diagnostics. PLoS One (2012) 0.79
A computational study of expanded heterocyclic nucleosides in DNA. J Biomol Struct Dyn (2008) 0.79
Use of nucleic Acid analogs for the study of nucleic Acid interactions. J Nucleic Acids (2011) 0.78
Improved assay-dependent searching of nucleic acid sequence databases. Nucleic Acids Res (2008) 0.78
Structural changes of an abasic site in duplex DNA affect noncovalent binding of the spin label ç. Nucleic Acids Res (2011) 0.78
PrimerSuite: A High-Throughput Web-Based Primer Design Program for Multiplex Bisulfite PCR. Sci Rep (2017) 0.78
Association between the ACE insertion/deletion polymorphism and pterygium in Sardinian patients: a population based case-control study. BMJ Open (2014) 0.77
Rational design of DNA sequences for nanotechnology, microarrays and molecular computers using Eulerian graphs. Nucleic Acids Res (2004) 0.76
COMplementary Primer ASymmetric PCR (COMPAS-PCR) Applied to the Identification of Salmo salar, Salmo trutta and Their Hybrids. PLoS One (2016) 0.75
Thermodynamic and structural analysis of DNA damage architectures related to replication. J Nucleic Acids (2013) 0.75
Enzyme-guided DNA Sewing Architecture. Sci Rep (2015) 0.75
Native characterization of nucleic acid motif thermodynamics via non-covalent catalysis. Nat Commun (2016) 0.75
Kinetic selection vs. free energy of DNA base pairing in control of polymerase fidelity. Proc Natl Acad Sci U S A (2016) 0.75
Enhanced NMR signal detection of imino protons in RNA molecules containing 3' dangling nucleotides. J Biomol NMR (2008) 0.75
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J Mol Biol (1999) 41.48
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Thermodynamics and NMR of internal G.T mismatches in DNA. Biochemistry (1997) 7.33
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Improved nearest-neighbor parameters for predicting DNA duplex stability. Biochemistry (1996) 6.68
Nearest neighbor thermodynamic parameters for internal G.A mismatches in DNA. Biochemistry (1998) 4.85
Nearest-neighbor thermodynamics of internal A.C mismatches in DNA: sequence dependence and pH effects. Biochemistry (1998) 4.75
Thermodynamics of internal C.T mismatches in DNA. Nucleic Acids Res (1998) 4.62
Investigation of the structural basis for thermodynamic stabilities of tandem GU mismatches: solution structure of (rGAGGUCUC)2 by two-dimensional NMR and simulated annealing. Biochemistry (1996) 2.96
Contributions of dangling end stacking and terminal base-pair formation to the stabilities of XGGCCp, XCCGGp, XGGCCYp, and XCCGGYp helixes. Biochemistry (1985) 2.70
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Thermodynamics and NMR of internal G.T mismatches in DNA. Biochemistry (1997) 7.33
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Nearest-neighbor thermodynamics of internal A.C mismatches in DNA: sequence dependence and pH effects. Biochemistry (1998) 4.75
Thermodynamics of internal C.T mismatches in DNA. Nucleic Acids Res (1998) 4.62
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Unique structural and stabilizing roles for the individual pseudouridine residues in the 1920 region of Escherichia coli 23S rRNA. Nucleic Acids Res (2000) 1.46
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Statistical mechanical simulation of polymeric DNA melting with MELTSIM. Bioinformatics (1999) 1.33
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The crystal structure of an RNA oligomer incorporating tandem adenosine-inosine mismatches. Nucleic Acids Res (1997) 0.83
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