PubRank

Aaron R Dinner

Author PubWeight™ 66.56‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Multilineage transcriptional priming and determination of alternate hematopoietic cell fates. Cell 2006 5.39
2 The immunological synapse balances T cell receptor signaling and degradation. Science 2003 4.94
3 CD4 enhances T cell sensitivity to antigen by coordinating Lck accumulation at the immunological synapse. Nat Immunol 2004 3.21
4 Automatic method for identifying reaction coordinates in complex systems. J Phys Chem B 2005 3.03
5 B cell antigen receptor signaling and internalization are mutually exclusive events. PLoS Biol 2006 1.85
6 Epigenetic repression of the Igk locus by STAT5-mediated recruitment of the histone methyltransferase Ezh2. Nat Immunol 2011 1.59
7 Transcriptional regulation of germinal center B and plasma cell fates by dynamical control of IRF4. Immunity 2013 1.52
8 Atomistic understanding of kinetic pathways for single base-pair binding and unbinding in DNA. Proc Natl Acad Sci U S A 2003 1.46
9 The Pseudomonas aeruginosa multidrug efflux regulator MexR uses an oxidation-sensing mechanism. Proc Natl Acad Sci U S A 2008 1.39
10 Contractile units in disordered actomyosin bundles arise from F-actin buckling. Phys Rev Lett 2012 1.38
11 Grand canonical Monte Carlo simulations of water in protein environments. J Chem Phys 2004 1.36
12 A two-step nucleotide-flipping mechanism enables kinetic discrimination of DNA lesions by AGT. Proc Natl Acad Sci U S A 2008 1.21
13 Umbrella sampling for nonequilibrium processes. J Chem Phys 2007 1.20
14 A self-reinforcing regulatory network triggered by limiting IL-7 activates pre-BCR signaling and differentiation. Nat Immunol 2012 1.18
15 An incoherent regulatory network architecture that orchestrates B cell diversification in response to antigen signaling. Mol Syst Biol 2011 1.17
16 Intracellular transport of insulin granules is a subordinated random walk. Proc Natl Acad Sci U S A 2013 1.16
17 Polymerization of MIP-1 chemokine (CCL3 and CCL4) and clearance of MIP-1 by insulin-degrading enzyme. EMBO J 2010 1.16
18 Nonequilibrium umbrella sampling in spaces of many order parameters. J Chem Phys 2009 1.14
19 Requirements for contractility in disordered cytoskeletal bundles. New J Phys 2012 1.12
20 Elastic energy storage in beta-sheets with application to F1-ATPase. Eur Biophys J 2003 1.10
21 Monte Carlo simulations of biomolecules: The MC module in CHARMM. J Comput Chem 2006 1.08
22 Improved predictions of transcription factor binding sites using physicochemical features of DNA. Nucleic Acids Res 2012 1.06
23 Signatures of combinatorial regulation in intrinsic biological noise. Proc Natl Acad Sci U S A 2008 1.05
24 Modeling bistable cell-fate choices in the Drosophila eye: qualitative and quantitative perspectives. Development 2010 1.02
25 Discovering transcription factor regulatory targets using gene expression and binding data. Bioinformatics 2011 1.02
26 Delineation of folding pathways of a β-sheet miniprotein. J Phys Chem B 2011 1.01
27 Bias annealing: a method for obtaining transition paths de novo. J Chem Phys 2006 0.96
28 Separating forward and backward pathways in nonequilibrium umbrella sampling. J Chem Phys 2009 0.94
29 Assembly of vorticity-aligned hard-sphere colloidal strings in a simple shear flow. Proc Natl Acad Sci U S A 2011 0.94
30 Using the bias from flow to elucidate single DNA repair protein sliding and interactions with DNA. Biophys J 2009 0.93
31 Enhanced sampling of nonequilibrium steady states. Annu Rev Phys Chem 2010 0.92
32 A hybrid deterministic-stochastic algorithm for modeling cell signaling dynamics in spatially inhomogeneous environments and under the influence of external fields. J Phys Chem B 2006 0.92
33 Duplex interrogation by a direct DNA repair protein in search of base damage. Nat Struct Mol Biol 2012 0.91
34 Dynamic coupling between coordinates in a model for biomolecular isomerization. J Chem Phys 2006 0.91
35 Mechanistic insights from a quantitative analysis of pollen tube guidance. BMC Plant Biol 2010 0.89
36 Distribution of directional change as a signature of complex dynamics. Proc Natl Acad Sci U S A 2013 0.86
37 Phase resetting reveals network dynamics underlying a bacterial cell cycle. PLoS Comput Biol 2012 0.86
38 Model for how retrograde actin flow regulates adhesion traction stresses. J Phys Condens Matter 2010 0.85
39 A model for TCR gene segment use. J Immunol 2006 0.85
40 Conformational sampling via a self-regulating effective energy surface. J Chem Phys 2006 0.84
41 Extracting physically intuitive reaction coordinates from transition networks of a beta-sheet miniprotein. J Phys Chem B 2010 0.82
42 Enhancement of diffusion-controlled reaction rates by surface-induced orientational restriction. Biophys J 2005 0.81
43 Implications of alternative substrate binding modes for catalysis by uracil-DNA glycosylase: an apparent discrepancy resolved. Biochemistry 2006 0.81
44 Steered transition path sampling. J Chem Phys 2012 0.80
45 Models of single-molecule experiments with periodic perturbations reveal hidden dynamics in RNA folding. J Phys Chem B 2009 0.80
46 Apparent directional scanning for DNA repair. Biophys J 2007 0.80
47 Shape dynamics of growing cell walls. Soft Matter 2016 0.80
48 How focal adhesion size depends on integrin affinity. Langmuir 2009 0.79
49 How noise statistics impact models of enzyme cycles. J Chem Phys 2008 0.78
50 Lattice model for self-assembly with application to the formation of cytoskeletal-like structures. Phys Rev E Stat Nonlin Soft Matter Phys 2007 0.78
51 Relation between ordering and shear thinning in colloidal suspensions. Proc Natl Acad Sci U S A 2013 0.77
52 Entrainment of a driven oscillator as a dynamical phase transition. Phys Rev E Stat Nonlin Soft Matter Phys 2011 0.76
53 Model for competition from self during passive immunization, with application to broadly neutralizing antibodies for HIV. Vaccine 2011 0.76
54 How the nature of an observation affects single-trajectory entropies. J Chem Phys 2008 0.75
55 Field theoretic treatment of an effective action for a model of catalyzed autoamplification. Phys Rev E Stat Nonlin Soft Matter Phys 2010 0.75
56 Spreading of colloid clusters in a quasi-one-dimensional channel. J Chem Phys 2010 0.75
57 Short-time evolution in the adaptive immune system. Phys Rev E Stat Nonlin Soft Matter Phys 2011 0.75
58 Effects of nonproductive binding on the kinetics of enzymatic reactions with patterned substrates. J Chem Phys 2007 0.75
59 Critical behavior of a model for catalyzed autoamplification. J Chem Phys 2009 0.75
60 Minimizing memory as an objective for coarse-graining. J Chem Phys 2013 0.75
61 miR-4728-3p Functions as a Tumor Suppressor in Ulcerative Colitis-associated Colorectal Neoplasia Through Regulation of Focal Adhesion Signaling. Inflamm Bowel Dis 2017 0.75
62 Control of genotypic allelic inclusion through TCR surface expression. J Immunol 2005 0.75
63 Structural responses of quasi-two-dimensional colloidal fluids to excitations elicited by nonequilibrium perturbations. Phys Rev E Stat Nonlin Soft Matter Phys 2012 0.75
64 Incorporating friction and collective shear moves into a lattice gas. Phys Rev E Stat Nonlin Soft Matter Phys 2010 0.75