Identification of QTLs for eight agronomically important traits using an ultra-high-density map based on SNPs generated from high-throughput sequencing in sorghum under contrasting photoperiods.

PubWeight™: 1.22‹?› | Rank: Top 10%

🔗 View Article (PMID 22859680)

Published in J Exp Bot on August 01, 2012

Authors

Guihua Zou1, Guowei Zhai, Qi Feng, Song Yan, Ahong Wang, Qiang Zhao, Jianfeng Shao, Zhipeng Zhang, Jianqiu Zou, Bin Han, Yuezhi Tao

Author Affiliations

1: State Key Laboratory Breeding Base for Zhejiang Sustainable Pest and Disease Control, Institute of Crop and Nuclear Technology Utilization, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021 China.

Articles citing this

Construction of a high-density genetic map based on large-scale markers developed by specific length amplified fragment sequencing (SLAF-seq) and its application to QTL analysis for isoflavone content in Glycine max. BMC Genomics (2014) 1.30

An ultra-high density bin-map for rapid QTL mapping for tassel and ear architecture in a large F₂ maize population. BMC Genomics (2014) 1.22

Mapping QTLs and association of differentially expressed gene transcripts for multiple agronomic traits under different nitrogen levels in sorghum. BMC Plant Biol (2016) 0.89

Extensive variation in the density and distribution of DNA polymorphism in sorghum genomes. PLoS One (2013) 0.88

Genotyping by sequencing approaches to characterise crop genomes: choosing the right tool for the right application. Plant Biotechnol J (2016) 0.85

Construction of high-quality recombination maps with low-coverage genomic sequencing for joint linkage analysis in maize. BMC Biol (2015) 0.84

Rapid genotyping by low-coverage resequencing to construct genetic linkage maps of fungi: a case study in Lentinula edodes. BMC Res Notes (2013) 0.82

Tinkering with meiosis. J Exp Bot (2012) 0.81

Genetic dissection of maize plant architecture with an ultra-high density bin map based on recombinant inbred lines. BMC Genomics (2016) 0.80

Genomic structure analysis of a set of Oryza nivara introgression lines and identification of yield-associated QTLs using whole-genome resequencing. Sci Rep (2016) 0.80

High-Density Genetic Mapping Identifies New Major Loci for Tolerance to Low-Phosphorus Stress in Soybean. Front Plant Sci (2016) 0.78

Construction of the first high-density genetic linkage map of Salvia miltiorrhiza using specific length amplified fragment (SLAF) sequencing. Sci Rep (2016) 0.78

Silicon era of carbon-based life: application of genomics and bioinformatics in crop stress research. Int J Mol Sci (2013) 0.78

Construction of a dense genetic linkage map and mapping quantitative trait loci for economic traits of a doubled haploid population of Pyropia haitanensis (Bangiales, Rhodophyta). BMC Plant Biol (2015) 0.78

Genetic variation of temperature-regulated curd induction in cauliflower: elucidation of floral transition by genome-wide association mapping and gene expression analysis. Front Plant Sci (2015) 0.77

PAV markers in Sorghum bicolour: genome pattern, affected genes and pathways, and genetic linkage map construction. Theor Appl Genet (2015) 0.77

Ensemble Learning of QTL Models Improves Prediction of Complex Traits. G3 (Bethesda) (2015) 0.76

An ultra-high-density bin map facilitates high-throughput QTL mapping of horticultural traits in pepper (Capsicum annuum). DNA Res (2016) 0.76

Genetic basis of maize kernel starch content revealed by high-density single nucleotide polymorphism markers in a recombinant inbred line population. BMC Plant Biol (2015) 0.75

Ultra-dense SNP genetic map construction and identification of SiDt gene controlling the determinate growth habit in Sesamum indicum L. Sci Rep (2016) 0.75

Genome-wide association analysis of seedling traits in diverse Sorghum germplasm under thermal stress. BMC Plant Biol (2017) 0.75

Molecular Approaches to Understand Nutritional Potential of Coarse Cereals. Curr Genomics (2016) 0.75

Development of a high-density genetic linkage map and identification of flowering time QTLs in adzuki bean (Vigna angularis). Sci Rep (2016) 0.75

Molecular Mapping and QTL for Expression Profiles of Flavonoid Genes in Brassica napus. Front Plant Sci (2016) 0.75

Two distinct classes of QTL determine rust resistance in sorghum. BMC Plant Biol (2014) 0.75

Genetic dissection of maize seedling root system architecture traits using an ultra-high density bin-map and a recombinant inbred line population. J Integr Plant Biol (2016) 0.75

Uncovering a Nuisance Influence of a Phenological Trait of Plants Using a Nonlinear Structural Equation: Application to Days to Heading and Culm Length in Asian Cultivated Rice (Oryza Sativa L.). PLoS One (2016) 0.75

High Density Linkage Map Construction and Mapping of Yield Trait QTLs in Maize (Zea mays) Using the Genotyping-by-Sequencing (GBS) Technology. Front Plant Sci (2017) 0.75

A high-throughput, field-based phenotyping technology for tall biomass crops. Plant Physiol (2017) 0.75

Validation of QTL mapping and transcriptome profiling for identification of candidate genes associated with nitrogen stress tolerance in sorghum. BMC Plant Biol (2017) 0.75

Articles by these authors

Genome-wide association studies of 14 agronomic traits in rice landraces. Nat Genet (2010) 8.75

Structure of the human dopamine D3 receptor in complex with a D2/D3 selective antagonist. Science (2010) 5.86

High-throughput genotyping by whole-genome resequencing. Genome Res (2009) 5.74

GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein. Theor Appl Genet (2006) 5.51

A map of rice genome variation reveals the origin of cultivated rice. Nature (2012) 4.92

Sequence and analysis of rice chromosome 4. Nature (2002) 4.39

The Rice Annotation Project Database (RAP-DB): 2008 update. Nucleic Acids Res (2007) 4.23

Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm. Nat Genet (2011) 4.19

Control of tillering in rice. Nature (2003) 3.73

Quantitative nature of Arabidopsis responses during compatible and incompatible interactions with the bacterial pathogen Pseudomonas syringae. Plant Cell (2003) 3.69

Structure of the CCR5 chemokine receptor-HIV entry inhibitor maraviroc complex. Science (2013) 3.17

Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana. Genome Res (2007) 3.13

Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq. Genome Res (2010) 2.73

Parent-independent genotyping for constructing an ultrahigh-density linkage map based on population sequencing. Proc Natl Acad Sci U S A (2010) 2.63

Autologous mesenchymal stem cell transplantation induce VEGF and neovascularization in ischemic myocardium. Regul Pept (2004) 2.56

Paracrine action enhances the effects of autologous mesenchymal stem cell transplantation on vascular regeneration in rat model of myocardial infarction. Ann Thorac Surg (2005) 2.35

BRITTLE CULM1, which encodes a COBRA-like protein, affects the mechanical properties of rice plants. Plant Cell (2003) 2.19

Skeletonized internal thoracic artery harvest improves prognosis in high-risk population after coronary artery bypass surgery for good quality grafts. Ann Thorac Surg (2011) 2.08

The broad-spectrum blast resistance gene Pi9 encodes a nucleotide-binding site-leucine-rich repeat protein and is a member of a multigene family in rice. Genetics (2005) 2.01

The oryza map alignment project: the golden path to unlocking the genetic potential of wild rice species. Plant Mol Biol (2005) 1.84

An F-box gene linked to the self-incompatibility (S) locus of Antirrhinum is expressed specifically in pollen and tapetum. Plant Mol Biol (2002) 1.83

The draft genome of the fast-growing non-timber forest species moso bamboo (Phyllostachys heterocycla). Nat Genet (2013) 1.68

AMP-activated protein kinase signalling pathways are down regulated and skeletal muscle development impaired in fetuses of obese, over-nourished sheep. J Physiol (2008) 1.68

Luminescent chemodosimeters for bioimaging. Chem Rev (2012) 1.61

Identification and characterization of Bph14, a gene conferring resistance to brown planthopper in rice. Proc Natl Acad Sci U S A (2009) 1.60

Functional analysis of promoter mutations in the ACTN4 and SYNPO genes in focal segmental glomerulosclerosis. Nephrol Dial Transplant (2009) 1.58

A haplotype map of genomic variations and genome-wide association studies of agronomic traits in foxtail millet (Setaria italica). Nat Genet (2013) 1.58

The role of DNA double-strand breaks in spontaneous homologous recombination in S. cerevisiae. PLoS Genet (2006) 1.57

Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1. Plant Cell (2012) 1.56

Systematic evaluation of the flexible and rigid annuloplasty ring after mitral valve repair for mitral regurgitation. Eur J Cardiothorac Surg (2011) 1.55

Similarity and divergence of phylogenies, antimicrobial susceptibilities, and virulence factor profiles of Escherichia coli isolates causing recurrent urinary tract infections that persist or result from reinfection. J Clin Microbiol (2012) 1.53

Dynamic normal aortic root diameters: implications for aortic root reconstruction. Ann Thorac Surg (2011) 1.51

Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa). Gene (2007) 1.51

Natural variations and genome-wide association studies in crop plants. Annu Rev Plant Biol (2013) 1.50

Overexpression of a NAC transcription factor enhances rice drought and salt tolerance. Biochem Biophys Res Commun (2009) 1.48

Rice 2020: a call for an international coordinated effort in rice functional genomics. Mol Plant (2008) 1.45

Compromised small-world efficiency of structural brain networks in schizophrenic patients and their unaffected parents. Neurosci Bull (2015) 1.43

Expression profiles of 10,422 genes at early stage of low nitrogen stress in rice assayed using a cDNA microarray. Plant Mol Biol (2006) 1.42

Monitoring molecular recognition of the ribosomal decoding site. Angew Chem Int Ed Engl (2004) 1.42

Identification of OsbZIP72 as a positive regulator of ABA response and drought tolerance in rice. Planta (2008) 1.40

Life-threatening bupropion ingestion: is there a role for intravenous fat emulsion? Basic Clin Pharmacol Toxicol (2011) 1.39

Role of surgical ventricular restoration in the treatment of ischemic cardiomyopathy. Ann Thorac Surg (2013) 1.39

Photofabrication of fullerene-shelled quantum dots supramolecular nanoparticles for solar energy harvesting. ACS Nano (2012) 1.38

Lipopolysaccharides can protect mesenchymal stem cells (MSCs) from oxidative stress-induced apoptosis and enhance proliferation of MSCs via Toll-like receptor(TLR)-4 and PI3K/Akt. Cell Biol Int (2009) 1.37

Genome-wide analysis of transposon insertion polymorphisms reveals intraspecific variation in cultivated rice. Plant Physiol (2008) 1.37

Ultrasensitive assays for proteins. Analyst (2007) 1.35

Evidence of Arabidopsis salt acclimation induced by up-regulation of HY1 and the regulatory role of RbohD-derived reactive oxygen species synthesis. Plant J (2011) 1.35

The influence of different methods of acupuncture on skin surface perfusion. J Tradit Chin Med (2012) 1.34

Mapping 49 quantitative trait loci at high resolution through sequencing-based genotyping of rice recombinant inbred lines. Theor Appl Genet (2010) 1.34

A molecular genetic dissection of the evolutionarily conserved N terminus of yeast Rad52. Genetics (2002) 1.32

Isolation of circulating epithelial and tumor progenitor cells with an invasive phenotype from breast cancer patients. Int J Cancer (2010) 1.31

The Magnaporthe oryzae avirulence gene AvrPiz-t encodes a predicted secreted protein that triggers the immunity in rice mediated by the blast resistance gene Piz-t. Mol Plant Microbe Interact (2009) 1.30

The bHLH transcription factor MdbHLH3 promotes anthocyanin accumulation and fruit colouration in response to low temperature in apples. Plant Cell Environ (2012) 1.30

Functional phenotyping and genotyping of circulating tumor cells from patients with castration resistant prostate cancer. Cancer Lett (2009) 1.30

Dwarf 88, a novel putative esterase gene affecting architecture of rice plant. Plant Mol Biol (2009) 1.29

Inducible defense mechanism against nitric oxide in Candida albicans. Eukaryot Cell (2004) 1.29

Structural analysis of lipid complexes of GM2-activator protein. J Mol Biol (2003) 1.27

Clinical significance of circulating tumor cells detected by an invasion assay in peripheral blood of patients with ovarian cancer. Gynecol Oncol (2008) 1.27

A fine physical map of the rice chromosome 4. Genome Res (2002) 1.26

Independent losses of function in a polyphenol oxidase in rice: differentiation in grain discoloration between subspecies and the role of positive selection under domestication. Plant Cell (2008) 1.24

Gene expression phenotypes of Arabidopsis associated with sensitivity to low temperatures. Plant Physiol (2003) 1.24

Intronic miR-301 feedback regulates its host gene, ska2, in A549 cells by targeting MEOX2 to affect ERK/CREB pathways. Biochem Biophys Res Commun (2010) 1.23

Genetic control of a transition from black to straw-white seed hull in rice domestication. Plant Physiol (2011) 1.22

Structural features of the rice chromosome 4 centromere. Nucleic Acids Res (2004) 1.21

Features of the expressed sequences revealed by a large-scale analysis of ESTs from a normalized cDNA library of the elite indica rice cultivar Minghui 63. Plant J (2005) 1.18