Published in Gene on January 26, 2007
Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions. Nat Genet (2013) 2.46
Transcriptome analysis of grain development in hexaploid wheat. BMC Genomics (2008) 1.92
Comprehensive transcriptome analysis of phytohormone biosynthesis and signaling genes in microspore/pollen and tapetum of rice. Plant Cell Physiol (2008) 1.77
Genome-wide analysis of Aux/IAA and ARF gene families in Populus trichocarpa. BMC Plant Biol (2007) 1.50
Expression of aberrant forms of AUXIN RESPONSE FACTOR8 stimulates parthenocarpy in Arabidopsis and tomato. Plant Physiol (2007) 1.48
Auxin controls Arabidopsis adventitious root initiation by regulating jasmonic acid homeostasis. Plant Cell (2012) 1.31
The evolution of nuclear auxin signalling. BMC Evol Biol (2009) 1.27
Auxin and monocot development. Cold Spring Harb Perspect Biol (2010) 1.22
Identification of soybean seed developmental stage-specific and tissue-specific miRNA targets by degradome sequencing. BMC Genomics (2012) 1.14
Genome-wide identification and expression profiling of auxin response factor (ARF) gene family in maize. BMC Genomics (2011) 1.09
Genome-wide analysis of auxin response factor (ARF) gene family from tomato and analysis of their role in flower and fruit development. Mol Genet Genomics (2011) 1.08
Characterization of the tomato ARF gene family uncovers a multi-levels post-transcriptional regulation including alternative splicing. PLoS One (2014) 1.08
Comprehensive expression profiling analysis of OsIAA gene family in developmental processes and in response to phytohormone and stress treatments. Planta (2008) 1.06
Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.). J Exp Bot (2010) 1.02
Genome-wide analysis of Aux/IAA gene family in Solanaceae species using tomato as a model. Mol Genet Genomics (2012) 1.02
Identification, isolation and expression analysis of auxin response factor (ARF) genes in Solanum lycopersicum. Plant Cell Rep (2011) 1.00
Auxin response factor gene family in Brassica rapa: genomic organization, divergence, expression, and evolution. Mol Genet Genomics (2012) 0.97
Sequence and expression analysis of the thioredoxin protein gene family in rice. Mol Genet Genomics (2008) 0.97
KT/HAK/KUP potassium transporters gene family and their whole-life cycle expression profile in rice (Oryza sativa). Mol Genet Genomics (2008) 0.92
A comprehensive genome-wide study on tissue-specific and abiotic stress-specific miRNAs in Triticum aestivum. PLoS One (2014) 0.91
Transcriptome sequencing and analysis of the fast growing shoots of moso bamboo (Phyllostachys edulis). PLoS One (2013) 0.88
Intragenic suppressor of Osiaa23 revealed a conserved tryptophan residue crucial for protein-protein interactions. PLoS One (2014) 0.87
QTLs underlying natural variation of root growth angle among rice cultivars with the same functional allele of DEEPER ROOTING 1. Rice (N Y) (2015) 0.86
Genome-wide identification and expression analysis of auxin response factor gene family in Medicago truncatula. Front Plant Sci (2015) 0.84
Genome-wide identification, characterization and expression analysis of the auxin response factor gene family in Vitis vinifera. Plant Cell Rep (2014) 0.84
A Review of Auxin Response Factors (ARFs) in Plants. Front Plant Sci (2016) 0.83
AUXIN RESPONSE FACTOR17 is essential for pollen wall pattern formation in Arabidopsis. Plant Physiol (2013) 0.83
The auxin response factor gene family in banana: genome-wide identification and expression analyses during development, ripening, and abiotic stress. Front Plant Sci (2015) 0.83
Origin and development of the root cap in rice. Plant Physiol (2014) 0.82
Wide-scale screening of T-DNA lines for transcription factor genes affecting male gametophyte development in Arabidopsis. Sex Plant Reprod (2011) 0.82
Sequence variation and selection of small RNAs in domesticated rice. BMC Evol Biol (2010) 0.82
Genome-wide identification, isolation and expression analysis of auxin response factor (ARF) gene family in sweet orange (Citrus sinensis). Front Plant Sci (2015) 0.82
Action of multiple intra-QTL genes concerted around a co-localized transcription factor underpins a large effect QTL. Sci Rep (2015) 0.82
Genome-wide identification and characterization of auxin response factor (ARF) family genes related to flower and fruit development in papaya (Carica papaya L.). BMC Genomics (2015) 0.82
Gene expression of halophyte Kosteletzkya virginica seedlings under salt stress at early stage. Genetica (2009) 0.81
Genome-wide characterization and expression profiling of the AUXIN RESPONSE FACTOR (ARF) gene family in Eucalyptus grandis. PLoS One (2014) 0.80
Rice fruit development is associated with an increased IAA content in pollinated ovaries. Planta (2010) 0.79
Genome-wide identification of auxin response factor (ARF) genes and its tissue-specific prominent expression in Gossypium raimondii. Funct Integr Genomics (2015) 0.79
Auxin involvement in tepal senescence and abscission in Lilium: a tale of two lilies. J Exp Bot (2014) 0.79
Identification and Expression Analysis of BURP Domain-Containing Genes in Medicago truncatula. Front Plant Sci (2016) 0.79
Epidermal cells that undergo cell death differentially express cell identity genes. Plant Signal Behav (2009) 0.78
Genomic Identification and Expression Analysis of the Phosphate Transporter Gene Family in Poplar. Front Plant Sci (2016) 0.78
Genome-wide analysis of auxin response factor gene family members in medicinal model plant Salvia miltiorrhiza. Biol Open (2016) 0.77
Aldehyde dehydrogenase protein superfamily in maize. Funct Integr Genomics (2012) 0.77
Specific/nonspecific binding of TBP to promoter DNA of the auxin response factor genes in plants correlated with ARFs function on gene transcription (activator/repressor). Dokl Biochem Biophys (2010) 0.77
Genome-wide analysis and expression profiling suggest diverse roles of GH3 genes during development and abiotic stress responses in legumes. Front Plant Sci (2015) 0.77
Upstream regulatory architecture of rice genes: summarizing the baseline towards genus-wide comparative analysis of regulatory networks and allele mining. Rice (N Y) (2015) 0.77
The ARF, AUX/IAA and GH3 gene families in citrus: genome-wide identification and expression analysis during fruitlet drop from abscission zone A. Mol Genet Genomics (2015) 0.76
Expression and functional analysis of genes encoding cytokinin receptor-like histidine kinase in maize (Zea mays L.). Mol Genet Genomics (2014) 0.76
Identification and Network-Enabled Characterization of Auxin Response Factor Genes in Medicago truncatula. Front Plant Sci (2016) 0.75
NMR-based metabolomic analysis of wild, greenhouse, and in vitro regenerated shoots of Cymbopogon schoenanthus subsp. proximus with GC-MS assessment of proximadiol. Physiol Mol Biol Plants (2017) 0.75
Identification and characterization of the GhHsp20 gene family in Gossypium hirsutum. Sci Rep (2016) 0.75
Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice. Sci Rep (2016) 0.75
Overexpression of wheat gene TaMOR improves root system architecture and grain yield in Oryza sativa. J Exp Bot (2016) 0.75
Root transcriptome of two contrasting indica rice cultivars uncovers regulators of root development and physiological responses. Sci Rep (2016) 0.75
Genome-Wide Single-Nucleotide Polymorphisms in CMS and Restorer Lines Discovered by Genotyping Using Sequencing and Association with Marker-Combining Ability for 12 Yield-Related Traits in Oryza sativa L. subsp. Japonica. Front Plant Sci (2017) 0.75
High throughput deep degradome sequencing reveals microRNAs and their targets in response to drought stress in mulberry (Morus alba). PLoS One (2017) 0.75
Genome-wide association study and gene set analysis for understanding candidate genes involved in salt tolerance at the rice seedling stage. Mol Genet Genomics (2017) 0.75
Auxin Response Factor Genes Repertoire in Mulberry: Identification, and Structural, Functional and Evolutionary Analyses. Genes (Basel) (2017) 0.75
SmARF8, a transcription factor involved in parthenocarpy in eggplant. Mol Genet Genomics (2015) 0.75
Genome-Wide Analysis of the Biosynthesis and Deactivation of Gibberellin-Dioxygenases Gene Family in Camellia sinensis (L.) O. Kuntze. Genes (Basel) (2017) 0.75
Lz-0 × Berkeley: a new Arabidopsis recombinant inbred line population for the mapping of complex traits. Mol Genet Genomics (2014) 0.75
Genome-wide association studies of 14 agronomic traits in rice landraces. Nat Genet (2010) 8.75
High-throughput genotyping by whole-genome resequencing. Genome Res (2009) 5.74
GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein. Theor Appl Genet (2006) 5.51
A map of rice genome variation reveals the origin of cultivated rice. Nature (2012) 4.92
Sequence and analysis of rice chromosome 4. Nature (2002) 4.39
The Rice Annotation Project Database (RAP-DB): 2008 update. Nucleic Acids Res (2007) 4.23
Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm. Nat Genet (2011) 4.19
Control of tillering in rice. Nature (2003) 3.73
Quantitative nature of Arabidopsis responses during compatible and incompatible interactions with the bacterial pathogen Pseudomonas syringae. Plant Cell (2003) 3.69
Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana. Genome Res (2007) 3.13
Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq. Genome Res (2010) 2.73
Parent-independent genotyping for constructing an ultrahigh-density linkage map based on population sequencing. Proc Natl Acad Sci U S A (2010) 2.63
BRITTLE CULM1, which encodes a COBRA-like protein, affects the mechanical properties of rice plants. Plant Cell (2003) 2.19
The broad-spectrum blast resistance gene Pi9 encodes a nucleotide-binding site-leucine-rich repeat protein and is a member of a multigene family in rice. Genetics (2005) 2.01
The oryza map alignment project: the golden path to unlocking the genetic potential of wild rice species. Plant Mol Biol (2005) 1.84
An F-box gene linked to the self-incompatibility (S) locus of Antirrhinum is expressed specifically in pollen and tapetum. Plant Mol Biol (2002) 1.83
The draft genome of the fast-growing non-timber forest species moso bamboo (Phyllostachys heterocycla). Nat Genet (2013) 1.68
AMP-activated protein kinase signalling pathways are down regulated and skeletal muscle development impaired in fetuses of obese, over-nourished sheep. J Physiol (2008) 1.68
Identification and characterization of Bph14, a gene conferring resistance to brown planthopper in rice. Proc Natl Acad Sci U S A (2009) 1.60
Functional analysis of promoter mutations in the ACTN4 and SYNPO genes in focal segmental glomerulosclerosis. Nephrol Dial Transplant (2009) 1.58
A haplotype map of genomic variations and genome-wide association studies of agronomic traits in foxtail millet (Setaria italica). Nat Genet (2013) 1.58
Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1. Plant Cell (2012) 1.56
Natural variations and genome-wide association studies in crop plants. Annu Rev Plant Biol (2013) 1.50
Overexpression of a NAC transcription factor enhances rice drought and salt tolerance. Biochem Biophys Res Commun (2009) 1.48
Rice 2020: a call for an international coordinated effort in rice functional genomics. Mol Plant (2008) 1.45
Expression profiles of 10,422 genes at early stage of low nitrogen stress in rice assayed using a cDNA microarray. Plant Mol Biol (2006) 1.42
Identification of OsbZIP72 as a positive regulator of ABA response and drought tolerance in rice. Planta (2008) 1.40
Genome-wide analysis of transposon insertion polymorphisms reveals intraspecific variation in cultivated rice. Plant Physiol (2008) 1.37
Evidence of Arabidopsis salt acclimation induced by up-regulation of HY1 and the regulatory role of RbohD-derived reactive oxygen species synthesis. Plant J (2011) 1.35
The influence of different methods of acupuncture on skin surface perfusion. J Tradit Chin Med (2012) 1.34
Mapping 49 quantitative trait loci at high resolution through sequencing-based genotyping of rice recombinant inbred lines. Theor Appl Genet (2010) 1.34
The Magnaporthe oryzae avirulence gene AvrPiz-t encodes a predicted secreted protein that triggers the immunity in rice mediated by the blast resistance gene Piz-t. Mol Plant Microbe Interact (2009) 1.30
Dwarf 88, a novel putative esterase gene affecting architecture of rice plant. Plant Mol Biol (2009) 1.29
A fine physical map of the rice chromosome 4. Genome Res (2002) 1.26
Independent losses of function in a polyphenol oxidase in rice: differentiation in grain discoloration between subspecies and the role of positive selection under domestication. Plant Cell (2008) 1.24
Gene expression phenotypes of Arabidopsis associated with sensitivity to low temperatures. Plant Physiol (2003) 1.24
Genetic control of a transition from black to straw-white seed hull in rice domestication. Plant Physiol (2011) 1.22
Identification of QTLs for eight agronomically important traits using an ultra-high-density map based on SNPs generated from high-throughput sequencing in sorghum under contrasting photoperiods. J Exp Bot (2012) 1.22
Identification and characterization of HTD2: a novel gene negatively regulating tiller bud outgrowth in rice. Planta (2009) 1.21
Structural features of the rice chromosome 4 centromere. Nucleic Acids Res (2004) 1.21
Features of the expressed sequences revealed by a large-scale analysis of ESTs from a normalized cDNA library of the elite indica rice cultivar Minghui 63. Plant J (2005) 1.18
A tiling microarray expression analysis of rice chromosome 4 suggests a chromosome-level regulation of transcription. Plant Cell (2005) 1.18
Resequencing rice genomes: an emerging new era of rice genomics. Trends Genet (2013) 1.16
Mutations of genes in synthesis of the carotenoid precursors of ABA lead to pre-harvest sprouting and photo-oxidation in rice. Plant J (2008) 1.15
Genome-wide characterization of the biggest grass, bamboo, based on 10,608 putative full-length cDNA sequences. BMC Plant Biol (2010) 1.14
Computational identification of 69 retroposons in Arabidopsis. Plant Physiol (2005) 1.12
Non-random distribution of T-DNA insertions at various levels of the genome hierarchy as revealed by analyzing 13 804 T-DNA flanking sequences from an enhancer-trap mutant library. Plant J (2007) 1.12
Guaianolide sesquiterpene lactones, a source to discover agents that selectively inhibit acute myelogenous leukemia stem and progenitor cells. J Med Chem (2012) 1.11
Developing high throughput genotyped chromosome segment substitution lines based on population whole-genome re-sequencing in rice (Oryza sativa L.). BMC Genomics (2010) 1.09
MicroRNA-7 regulates glioblastoma cell invasion via targeting focal adhesion kinase expression. Chin Med J (Engl) (2011) 1.09
Changes in Chinese policies to promote the rational use of antibiotics. PLoS Med (2013) 1.09
A collection of 10,096 indica rice full-length cDNAs reveals highly expressed sequence divergence between Oryza sativa indica and japonica subspecies. Plant Mol Biol (2007) 1.08
Long-term exposure to high particulate matter pollution and cardiovascular mortality: a 12-year cohort study in four cities in northern China. Environ Int (2013) 1.05
Exposure of different bacterial inocula to newborn chicken affects gut microbiota development and ileum gene expression. ISME J (2009) 1.04
Monitoring of gene expression profiles and isolation of candidate genes involved in pollination and fertilization in rice ( Oryza sativa L.) with a 10K cDNA microarray. Plant Mol Biol (2004) 1.04
An-1 encodes a basic helix-loop-helix protein that regulates awn development, grain size, and grain number in rice. Plant Cell (2013) 1.04
Small RNAs from MITE-derived stem-loop precursors regulate abscisic acid signaling and abiotic stress responses in rice. Plant J (2011) 1.03
Role of ZNF143 in tumor growth through transcriptional regulation of DNA replication and cell-cycle-associated genes. Cancer Sci (2010) 1.03
Seed size is determined by the combinations of the genes controlling different seed characteristics in rice. Theor Appl Genet (2011) 1.03
Microarray analysis reveals similarities and variations in genetic programs controlling pollination/fertilization and stress responses in rice (Oryza sativa L.). Plant Mol Biol (2005) 1.02
Affinities between the binding partners of the HIV-1 integrase dimer-lens epithelium-derived growth factor (IN dimer-LEDGF) complex. J Biol Chem (2009) 1.01
Collection and comparative analysis of 1888 full-length cDNAs from wild rice Oryza rufipogon Griff. W1943. DNA Res (2008) 1.01
Hydrogen gas acts as a novel bioactive molecule in enhancing plant tolerance to paraquat-induced oxidative stress via the modulation of heme oxygenase-1 signalling system. Plant Cell Environ (2012) 0.98
Strand-specific RNA-seq reveals widespread occurrence of novel cis-natural antisense transcripts in rice. BMC Genomics (2012) 0.98
X-ray acoustic computed tomography with pulsed x-ray beam from a medical linear accelerator. Med Phys (2013) 0.96
Structural diversity and differential transcription of the patatin multicopy gene family during potato tuber development. Genetics (2005) 0.95
Constitutive expression of a rice GTPase-activating protein induces defense responses. New Phytol (2008) 0.95
Few-layered CoHPO4 · 3H2O ultrathin nanosheets for high performance of electrode materials for supercapacitors. Nanoscale (2013) 0.95
Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development. Plant J (2012) 0.95
Inhibition of hepatitis C virus replication by GS-6620, a potent C-nucleoside monophosphate prodrug. Antimicrob Agents Chemother (2014) 0.94
Evolutionary and expression study of the aldehyde dehydrogenase (ALDH) gene superfamily in rice (Oryza sativa). Gene (2008) 0.94
Relationship between proline and Hg2+-induced oxidative stress in a tolerant rice mutant. Arch Environ Contam Toxicol (2008) 0.93
Mannose selection system used for cucumber transformation. Plant Cell Rep (2006) 0.93
A seasonal study of polycyclic aromatic hydrocarbons in PM(2.5) and PM(2.5-10) in five typical cities of Liaoning Province, China. J Hazard Mater (2010) 0.93
Evolutionary conservation of neighbouring gene pairs in plants. Gene (2009) 0.93
Evaluation of the geometric accuracy of surrogate-based gated VMAT using intrafraction kilovoltage x-ray images. Med Phys (2012) 0.91
Development and high-throughput genotyping of substitution lines carring the chromosome segments of indica 9311 in the background of japonica Nipponbare. J Genet Genomics (2011) 0.91
Exogenous gamma-aminobutyric acid alleviates oxidative damage caused by aluminium and proton stresses on barley seedlings. J Sci Food Agric (2010) 0.91
Identification and fine mapping of a thermo-sensitive chlorophyll deficient mutant in rice (Oryza sativa L.). Planta (2007) 0.90
Enhanced expression of PCAF endows apoptosis resistance in cisplatin-resistant cells. Mol Cancer Res (2010) 0.90
Molecular cytogenetic characterization of the Antirrhinum majus genome. Genetics (2004) 0.90
Sequence variations of simple sequence repeats on chromosome-4 in two subspecies of the Asian cultivated rice. Theor Appl Genet (2003) 0.89
Molecular dissection of the pathogen-inducible 3-deoxyanthocyanidin biosynthesis pathway in sorghum. Plant Cell Physiol (2010) 0.89
Protective effect of Salvia miltiorrhizae injection on N(G)-nitro-D-arginine induced nitric oxide deficient and oxidative damage in rat kidney. Exp Toxicol Pathol (2010) 0.89
Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production. Proc Natl Acad Sci U S A (2012) 0.89
Circadian disruption accelerates tumor growth and angio/stromagenesis through a Wnt signaling pathway. PLoS One (2010) 0.89
A pilot study of transcription unit analysis in rice using oligonucleotide tiling-path microarray. Plant Mol Biol (2005) 0.89
Y-box binding protein-1 is a novel molecular target for tumor vessels. Cancer Sci (2010) 0.89
Identification of QTLs associated with tissue culture response through sequencing-based genotyping of RILs derived from 93-11 × Nipponbare in rice (Oryza sativa). Plant Cell Rep (2012) 0.88
High throughput DNA sequencing: The new sequencing revolution. Plant Sci (2010) 0.88
Differential expressions of nuclear proteomes between honeybee (Apis mellifera L.) Queen and Worker Larvae: a deep insight into caste pathway decisions. J Proteome Res (2012) 0.87