Published in BMC Evol Biol on September 24, 2012
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol (2011) 220.97
MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res (2004) 168.89
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics (1989) 73.50
Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evol Bioinform Online (2007) 54.21
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics (2009) 44.48
Evolutionary relationship of DNA sequences in finite populations. Genetics (1983) 40.67
Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics (1997) 20.93
The molecular genetics of crop domestication. Cell (2006) 6.71
Divergent selection and heterogeneous genomic divergence. Mol Ecol (2008) 4.41
Gibberellin metabolism and its regulation. Annu Rev Plant Biol (2008) 4.39
New statistical tests of neutrality for DNA samples from a population. Genetics (1996) 3.75
Sealing plant surfaces: cuticular wax formation by epidermal cells. Annu Rev Plant Biol (2008) 3.70
Biosynthesis and secretion of plant cuticular wax. Prog Lipid Res (2003) 3.58
Protecting against water loss: analysis of the barrier properties of plant cuticles. J Exp Bot (2001) 3.15
Evolution of genome-phenome diversity under environmental stress. Proc Natl Acad Sci U S A (2001) 2.99
Molecular population genetics and the search for adaptive evolution in plants. Mol Biol Evol (2004) 2.71
The amount of DNA polymorphism maintained in a finite population when the neutral mutation rate varies among sites. Genetics (1996) 2.69
Rapid evolution of cis-regulatory sequences via local point mutations. Mol Biol Evol (2001) 2.51
Molecular diversity, structure and domestication of grasses. Genet Res (2001) 2.48
Plant domestication, a unique opportunity to identify the genetic basis of adaptation. Proc Natl Acad Sci U S A (2007) 2.31
Different gene regulation strategies revealed by analysis of binding motifs. Trends Genet (2009) 1.95
Unraveling the complex network of cuticular structure and function. Curr Opin Plant Biol (2006) 1.93
The Dof family of plant transcription factors. Trends Plant Sci (2002) 1.76
PlantPAN: Plant promoter analysis navigator, for identifying combinatorial cis-regulatory elements with distance constraint in plant gene groups. BMC Genomics (2008) 1.68
Molecular insights into the evolution of crop plants. Am J Bot (2008) 1.59
Drought and salt tolerances in wild relatives for wheat and barley improvement. Plant Cell Environ (2010) 1.54
Analysis of molecular diversity, population structure and linkage disequilibrium in a worldwide survey of cultivated barley germplasm (Hordeum vulgare L.). BMC Genet (2006) 1.45
On the relation between promoter divergence and gene expression evolution. Mol Syst Biol (2008) 1.43
Quantifying effects of environmental and geographical factors on patterns of genetic differentiation. Mol Ecol (2011) 1.42
An ABC transporter gene of Arabidopsis thaliana, AtWBC11, is involved in cuticle development and prevention of organ fusion. Plant Cell Physiol (2007) 1.32
Heterogeneous geographic patterns of nucleotide sequence diversity between two alcohol dehydrogenase genes in wild barley (Hordeum vulgare subspecies spontaneum). Proc Natl Acad Sci U S A (2001) 1.22
Cis-regulatory code of stress-responsive transcription in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2011) 1.21
An ATP-binding cassette subfamily G full transporter is essential for the retention of leaf water in both wild barley and rice. Proc Natl Acad Sci U S A (2011) 1.13
Phylogeographic analyses and paleodistribution modeling indicate pleistocene in situ survival of Hordeum species (Poaceae) in southern Patagonia without genetic or spatial restriction. Mol Biol Evol (2009) 1.04
Adaptive climatic molecular evolution in wild barley at the Isa defense locus. Proc Natl Acad Sci U S A (2007) 1.02
Phylogenetic simulation of promoter evolution: estimation and modeling of binding site turnover events and assessment of their impact on alignment tools. Genome Biol (2007) 0.99
Evolution under environmental stress at macro- and microscales. Genome Biol Evol (2011) 0.95
"Evolution Canyon," a potential microscale monitor of global warming across life. Proc Natl Acad Sci U S A (2012) 0.94
Evolutionary divergence and limits of conserved non-coding sequence detection in plant genomes. Nucleic Acids Res (2011) 0.93
Wild barley eibi1 mutation identifies a gene essential for leaf water conservation. Planta (2004) 0.92
Adaptive microclimatic structural and expressional dehydrin 1 evolution in wild barley, Hordeum spontaneum, at 'Evolution Canyon', Mount Carmel, Israel. Mol Ecol (2009) 0.90
Advances in analysis of transcriptional regulatory networks. Wiley Interdiscip Rev Syst Biol Med (2010) 0.88
Widespread recurrent evolution of genomic features. Genome Biol Evol (2012) 0.87
Scorpion biodiversity and interslope divergence at "evolution canyon", lower Nahal Oren microsite, Mt. Carmel, Israel. PLoS One (2009) 0.87
Alteration in expression of hormone-related genes in wild emmer wheat roots associated with drought adaptation mechanisms. Funct Integr Genomics (2011) 0.85
RAPD divergence caused by microsite edaphic selection in wild barley. Genetica (1999) 0.85
Phenotypic responses of wild barley to experimentally imposed water stress. J Exp Bot (2000) 0.82
Studying the evolution of promoter sequences: a waiting time problem. J Comput Biol (2010) 0.82
Nineteenth century seeds reveal the population genetics of landrace barley (Hordeum vulgare). Mol Biol Evol (2009) 0.80
Microsatellites within genes: structure, function, and evolution. Mol Biol Evol (2004) 5.01
Microsatellites: genomic distribution, putative functions and mutational mechanisms: a review. Mol Ecol (2002) 4.98
Characterization of polyploid wheat genomic diversity using a high-density 90,000 single nucleotide polymorphism array. Plant Biotechnol J (2014) 4.02
Highly multiplexed subcellular RNA sequencing in situ. Science (2014) 3.77
High-molecular-mass hyaluronan mediates the cancer resistance of the naked mole rat. Nature (2013) 3.32
A physical map of the 1-gigabase bread wheat chromosome 3B. Science (2008) 3.21
Six-rowed barley originated from a mutation in a homeodomain-leucine zipper I-class homeobox gene. Proc Natl Acad Sci U S A (2007) 2.82
A kinase-START gene confers temperature-dependent resistance to wheat stripe rust. Science (2009) 2.76
Prehabilitation versus rehabilitation: a randomized control trial in patients undergoing colorectal resection for cancer. Anesthesiology (2014) 2.53
Identifying the fundamental units of bacterial diversity: a paradigm shift to incorporate ecology into bacterial systematics. Proc Natl Acad Sci U S A (2008) 2.44
A systematic review of economic evaluations of enhanced recovery pathways for colorectal surgery. Ann Surg (2014) 2.16
Nanoscale live-cell imaging using hopping probe ion conductance microscopy. Nat Methods (2009) 2.12
A genome-wide association study in Han Chinese identifies new susceptibility loci for ankylosing spondylitis. Nat Genet (2011) 2.05
Telomere lengthening early in development. Nat Cell Biol (2007) 2.02
Polycistronic lentiviral vector for "hit and run" reprogramming of adult skin fibroblasts to induced pluripotent stem cells. Stem Cells (2009) 2.01
Multiple genetic processes result in heterogeneous rates of evolution within the major cluster disease resistance genes in lettuce. Plant Cell (2004) 1.94
Domestication quantitative trait loci in Triticum dicoccoides, the progenitor of wheat. Proc Natl Acad Sci U S A (2003) 1.92
Origin of sphinx, a young chimeric RNA gene in Drosophila melanogaster. Proc Natl Acad Sci U S A (2002) 1.92
FERONIA receptor-like kinase regulates RHO GTPase signaling of root hair development. Proc Natl Acad Sci U S A (2010) 1.82
Origin and evolution of circadian clock genes in prokaryotes. Proc Natl Acad Sci U S A (2003) 1.73
Autonomous navigation for autonomous underwater vehicles based on information filters and active sensing. Sensors (Basel) (2011) 1.72
Molecular biology of mosquito vitellogenesis: from basic studies to genetic engineering of antipathogen immunity. Insect Biochem Mol Biol (2002) 1.72
Neuroglobin and cytoglobin in search of their role in the vertebrate globin family. J Inorg Biochem (2005) 1.71
Prostate cancer-associated mutations in speckle-type POZ protein (SPOP) regulate steroid receptor coactivator 3 protein turnover. Proc Natl Acad Sci U S A (2013) 1.66
ISG56 is a negative-feedback regulator of virus-triggered signaling and cellular antiviral response. Proc Natl Acad Sci U S A (2009) 1.60
Selective functionalization of In2O3 nanowire mat devices for biosensing applications. J Am Chem Soc (2005) 1.57
Congruent mammalian trees from mitochondrial and nuclear genes using Bayesian methods. Mol Biol Evol (2003) 1.56
Widespread iron-rich conditions in the mid-Proterozoic ocean. Nature (2011) 1.55
Cytoglobin is a respiratory protein in connective tissue and neurons, which is up-regulated by hypoxia. J Biol Chem (2003) 1.54
Drought and salt tolerances in wild relatives for wheat and barley improvement. Plant Cell Environ (2010) 1.54
Adaptation and incipient sympatric speciation of Bacillus simplex under microclimatic contrast at "Evolution Canyons" I and II, Israel. Proc Natl Acad Sci U S A (2005) 1.50
Tibet is one of the centers of domestication of cultivated barley. Proc Natl Acad Sci U S A (2012) 1.48
Relation of alcohol consumption to angiographically proved coronary artery disease in chinese men. Am J Cardiol (2010) 1.48
Adenosine-to-inosine RNA editing shapes transcriptome diversity in primates. Proc Natl Acad Sci U S A (2010) 1.47
Diabetes and hypertension: is there a common metabolic pathway? Curr Atheroscler Rep (2012) 1.45
Involvement of inflammation, degradation, and apoptosis in a mouse model of glaucoma. J Biol Chem (2005) 1.43
Long-term viability and mechanical behavior following laser cartilage reshaping. Arch Facial Plast Surg (2006) 1.41
Evolution of p53 in hypoxia-stressed Spalax mimics human tumor mutation. Proc Natl Acad Sci U S A (2004) 1.41
A novel mutation in major intrinsic protein of the lens gene (MIP) underlies autosomal dominant cataract in a Chinese family. Mol Vis (2007) 1.40
Codon 104 variation of p53 gene provides adaptive apoptotic responses to extreme environments in mammals of the Tibet plateau. Proc Natl Acad Sci U S A (2013) 1.40
Cleistogamous flowering in barley arises from the suppression of microRNA-guided HvAP2 mRNA cleavage. Proc Natl Acad Sci U S A (2009) 1.38
PRC2 complexes with JARID2, MTF2, and esPRC2p48 in ES cells to modulate ES cell pluripotency and somatic cell reprogramming. Stem Cells (2011) 1.37
Tripartite motif 8 (TRIM8) modulates TNFα- and IL-1β-triggered NF-κB activation by targeting TAK1 for K63-linked polyubiquitination. Proc Natl Acad Sci U S A (2011) 1.36
Genomic asymmetry in allopolyploid plants: wheat as a model. J Exp Bot (2012) 1.31
Submicrometre geometrically encoded fluorescent barcodes self-assembled from DNA. Nat Chem (2012) 1.30
Autoxidation of unsaturated lipids in food emulsion. Crit Rev Food Sci Nutr (2011) 1.27
Quantum speciation in Aegilops: molecular cytogenetic evidence from rDNA cluster variability in natural populations. Proc Natl Acad Sci U S A (2004) 1.21
LSH and G9a/GLP complex are required for developmentally programmed DNA methylation. Genome Res (2010) 1.21
Fbxw7 is an independent prognostic marker and induces apoptosis and growth arrest by regulating YAP abundance in hepatocellular carcinoma. Mol Cancer (2014) 1.21
Ultralight, flexible, and fire-resistant carbon nanofiber aerogels from bacterial cellulose. Angew Chem Int Ed Engl (2013) 1.19
Adaptive role of increased frequency of polypurine tracts in mRNA sequences of thermophilic prokaryotes. Proc Natl Acad Sci U S A (2004) 1.19
The genetic basis of adaptive population differentiation: a quantitative trait locus analysis of fitness traits in two wild barley populations from contrasting habitats. Evolution (2004) 1.18
Delayed senescence of apple leaves by exogenous melatonin treatment: toward regulating the ascorbate-glutathione cycle. J Pineal Res (2011) 1.18
Comparative functional genomic analysis of Solanum glandular trichome types. Plant Physiol (2010) 1.18
Cassandra retrotransposons carry independently transcribed 5S RNA. Proc Natl Acad Sci U S A (2008) 1.18
Cancer resistance in the blind mole rat is mediated by concerted necrotic cell death mechanism. Proc Natl Acad Sci U S A (2012) 1.18
A sequence-ready physical map of barley anchored genetically by two million single-nucleotide polymorphisms. Plant Physiol (2013) 1.17
Identification and phylogenetic analysis of an Orf virus isolated from an outbreak in sheep in the Jilin province of China. Vet Microbiol (2009) 1.17
Adaptive melanin response of the soil fungus Aspergillus niger to UV radiation stress at "Evolution Canyon", Mount Carmel, Israel. PLoS One (2008) 1.17
Hypoxic stress tolerance of the blind subterranean mole rat: expression of erythropoietin and hypoxia-inducible factor 1 alpha. Proc Natl Acad Sci U S A (2004) 1.17
The importance of barley genetics and domestication in a global perspective. Ann Bot (2007) 1.16
Activity of the En/Spm-like transposons in meiosis as a base for chromosome repatterning in a small, isolated, peripheral population of Aegilops speltoides Tausch. Chromosome Res (2004) 1.16
Analysis of simple sequence repeats (SSRs) in wild barley from the Fertile Crescent: associations with ecology, geography and flowering time. Plant Mol Biol (2002) 1.16
TILLING in the two-rowed barley cultivar 'Barke' reveals preferred sites of functional diversity in the gene HvHox1. BMC Res Notes (2009) 1.16
Recombinant human adenovirus-p53 injection induced apoptosis in hepatocellular carcinoma cell lines mediated by p53-Fbxw7 pathway, which controls c-Myc and cyclin E. PLoS One (2013) 1.16
Anthracoidea caricis-meadii is a new North American smut fungus on Carex sect. Paniceae. Mycologia (2012) 1.15
LSm14A is a processing body-associated sensor of viral nucleic acids that initiates cellular antiviral response in the early phase of viral infection. Proc Natl Acad Sci U S A (2012) 1.14
Positive association between SIAT8B and schizophrenia in the Chinese Han population. Schizophr Res (2006) 1.14
Identification of piRNAs in Hela cells by massive parallel sequencing. BMB Rep (2010) 1.14
Birth of parthenote mice directly from parthenogenetic embryonic stem cells. Stem Cells (2009) 1.13
An ATP-binding cassette subfamily G full transporter is essential for the retention of leaf water in both wild barley and rice. Proc Natl Acad Sci U S A (2011) 1.13
A phylogenetic analysis based on nucleotide sequence of a marker linked to the brittle rachis locus indicates a diphyletic origin of barley. Ann Bot (2007) 1.12
A high-density cytogenetic map of the Aegilops tauschii genome incorporating retrotransposons and defense-related genes: insights into cereal chromosome structure and function. Plant Mol Biol (2002) 1.12
Association of the carboxyl-terminal PDZ ligand of neuronal nitric oxide synthase gene with schizophrenia in the Chinese Han population. Biochem Biophys Res Commun (2005) 1.12
Analysis of intraspecies diversity in wheat and barley genomes identifies breakpoints of ancient haplotypes and provides insight into the structure of diploid and hexaploid triticeae gene pools. Plant Physiol (2008) 1.11
Neuroglobin, cytoglobin, and myoglobin contribute to hypoxia adaptation of the subterranean mole rat Spalax. Proc Natl Acad Sci U S A (2010) 1.10
Sustained high levels of neuregulin-1 in the longest-lived rodents; a key determinant of rodent longevity. Aging Cell (2011) 1.10
A dog-associated primary pneumonic plague in Qinghai Province, China. Clin Infect Dis (2011) 1.09
Transcriptomic analysis of a tertiary relict plant, extreme xerophyte Reaumuria soongorica to identify genes related to drought adaptation. PLoS One (2013) 1.08
A genetic linkage map and comparative genome analysis of common carp (Cyprinus carpio L.) using microsatellites and SNPs. Mol Genet Genomics (2011) 1.08
Genome sequences of wild and domestic bactrian camels. Nat Commun (2012) 1.07
Transcriptomic signatures of attachment, NF-κB suppression and IFN stimulation in the catfish gill following columnaris bacterial infection. Dev Comp Immunol (2012) 1.07
The Arabidopsis PARAQUAT RESISTANT2 gene encodes an S-nitrosoglutathione reductase that is a key regulator of cell death. Cell Res (2009) 1.06
Proteasome inhibition modeling nigral neuron degeneration in Parkinson's disease. J Neurochem (2010) 1.06
Predictive validity of discriminant analysis for genetic data. Genetica (2003) 1.06
Transcript-specific associations of SLC12A5 (KCC2) in human prefrontal cortex with development, schizophrenia, and affective disorders. J Neurosci (2012) 1.05
Oxygen and carbon dioxide fluctuations in burrows of subterranean blind mole rats indicate tolerance to hypoxic-hypercapnic stresses. Comp Biochem Physiol A Mol Integr Physiol (2005) 1.05
Comparative analysis of the genomes of two field isolates of the rice blast fungus Magnaporthe oryzae. PLoS Genet (2012) 1.05
Drosophila flies in "Evolution Canyon" as a model for incipient sympatric speciation. Proc Natl Acad Sci U S A (2006) 1.04