Published in J Mol Evol on October 19, 2012
Multiple Genetic Mechanisms Contribute to Visual Sensitivity Variation in the Labridae. Mol Biol Evol (2015) 0.84
SWS2 visual pigment evolution as a test of historically contingent patterns of plumage color evolution in warblers. Evolution (2015) 0.82
Evolutionary dynamics of Rh2 opsins in birds demonstrate an episode of accelerated evolution in the New World warblers (Setophaga). Mol Ecol (2015) 0.77
Proximate and ultimate causes of variable visual sensitivities: Insights from cichlid fish radiations. Genesis (2016) 0.76
The opsin genes of amazonian cichlids. Mol Ecol (2017) 0.75
Convergent evolution of SWS2 opsin facilitates adaptive radiation of threespine stickleback into different light environments. PLoS Biol (2017) 0.75
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol (2007) 168.76
Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol (2000) 128.08
MODELTEST: testing the model of DNA substitution. Bioinformatics (1998) 101.19
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res (2002) 47.62
PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol (2007) 45.68
A codon-based model of nucleotide substitution for protein-coding DNA sequences. Mol Biol Evol (1994) 19.91
Bayes empirical bayes inference of amino acid sites under positive selection. Mol Biol Evol (2005) 11.26
A new method of inference of ancestral nucleotide and amino acid sequences. Genetics (1995) 10.23
Evolution and tinkering. Science (1977) 9.07
Adaptive evolution and explosive speciation: the cichlid fish model. Nat Rev Genet (2004) 5.82
Speciation through sensory drive in cichlid fish. Nature (2008) 5.52
Monophyletic origin of Lake Victoria cichlid fishes suggested by mitochondrial DNA sequences. Nature (1990) 5.34
The molecular basis of visual excitation. Nature (1968) 3.96
Vertebrate photoreceptors. Prog Retin Eye Res (2001) 3.00
Molecular evolution of vertebrate visual pigments. Prog Retin Eye Res (2000) 3.00
Communication and camouflage with the same 'bright' colours in reef fishes. Philos Trans R Soc Lond B Biol Sci (2000) 2.94
The visual ecology of avian photoreceptors. Prog Retin Eye Res (2001) 2.93
Age of cichlids: new dates for ancient lake fish radiations. Mol Biol Evol (2007) 2.50
Optimization, constraint, and history in the evolution of eyes. Q Rev Biol (1990) 2.41
Elucidation of phenotypic adaptations: Molecular analyses of dim-light vision proteins in vertebrates. Proc Natl Acad Sci U S A (2008) 2.34
Avian visual pigments: characteristics, spectral tuning, and evolution. Am Nat (2007) 2.23
Detection of convergent and parallel evolution at the amino acid sequence level. Mol Biol Evol (1997) 2.15
Ancient colour vision: multiple opsin genes in the ancestral vertebrates. Curr Biol (2003) 1.85
Evolution of dim-light and color vision pigments. Annu Rev Genomics Hum Genet (2008) 1.70
GeneFisher--software support for the detection of postulated genes. Proc Int Conf Intell Syst Mol Biol (1996) 1.56
Evolution of the cichlid visual palette through ontogenetic subfunctionalization of the opsin gene arrays. Mol Biol Evol (2006) 1.41
Molecular evolution of color vision in vertebrates. Gene (2002) 1.37
A species of reef fish that uses ultraviolet patterns for covert face recognition. Curr Biol (2010) 1.32
The ecology of cone pigments in teleost fishes. Vision Res (1978) 1.31
Form and function of damselfish skulls: rapid and repeated evolution into a limited number of trophic niches. BMC Evol Biol (2009) 1.30
Parallelism of amino acid changes at the RH1 affecting spectral sensitivity among deep-water cichlids from Lakes Tanganyika and Malawi. Proc Natl Acad Sci U S A (2005) 1.27
Ocular media transmission of coral reef fish--can coral reef fish see ultraviolet light? Vision Res (2001) 1.27
Molecular systematics of the damselfishes (Teleostei: Pomacentridae): Bayesian phylogenetic analyses of mitochondrial and nuclear DNA sequences. Mol Phylogenet Evol (2004) 1.24
Adaptive molecular evolution in the opsin genes of rapidly speciating cichlid species. Mol Biol Evol (2005) 1.23
The effect of selection on a long wavelength-sensitive (LWS) opsin gene of Lake Victoria cichlid fishes. Proc Natl Acad Sci U S A (2002) 1.20
The molecular basis for spectral tuning of rod visual pigments in deep-sea fish. J Exp Biol (2001) 1.20
Visual sensitivities tuned by heterochronic shifts in opsin gene expression. BMC Biol (2008) 1.20
The eyes have it: regulatory and structural changes both underlie cichlid visual pigment diversity. PLoS Biol (2009) 1.19
Exploring the radiation of a diverse reef fish family: phylogenetics of the damselfishes (Pomacentridae), with new classifications based on molecular analyses of all genera. Mol Phylogenet Evol (2008) 1.14
Interspecific variation in the visual pigments of deep-sea fishes. J Comp Physiol A (1989) 1.06
Colour vision in coral reef fish. J Exp Biol (2008) 1.05
Opsin gene duplication and divergence in ray-finned fish. Mol Phylogenet Evol (2011) 1.03
The molecular basis of color vision in colorful fish: four long wave-sensitive (LWS) opsins in guppies (Poecilia reticulata) are defined by amino acid substitutions at key functional sites. BMC Evol Biol (2008) 1.02
Gene duplication and differential gene expression play an important role in the diversification of visual pigments in fish. Integr Comp Biol (2009) 1.00
Functional diversification of lepidopteran opsins following gene duplication. Mol Biol Evol (2001) 0.99
Mechanism of spectral tuning in the dolphin visual pigments. Biochemistry (1998) 0.97
Multidimensional polarization sensitivity in damselfishes. J Comp Physiol A Neuroethol Sens Neural Behav Physiol (2003) 0.97
Parallel evolution of opsin gene expression in African cichlid fishes. Mol Biol Evol (2010) 0.96
A fish eye out of water: ten visual opsins in the four-eyed fish, Anableps anableps. PLoS One (2009) 0.95
The molecular evolution of avian ultraviolet- and violet-sensitive visual pigments. Mol Biol Evol (2007) 0.95
Ultraviolet visual pigments in marine fishes of the family pomacentridae. Vision Res (1994) 0.92
Natural selection of the rhodopsin gene during the adaptive radiation of East African Great Lakes cichlid fishes. Mol Biol Evol (2002) 0.91
Parallel and convergent evolution of the dim-light vision gene RH1 in bats (Order: Chiroptera). PLoS One (2010) 0.89
Potential ultraviolet vision in pre-settlement larvae and settled reef fish--a comparison across 23 families. Vision Res (2007) 0.88
Rod and cone opsin families differ in spectral tuning domains but not signal transducing domains as judged by saturated evolutionary trace analysis. J Mol Evol (2005) 0.88
Opsin phylogeny and evolution: a model for blue shifts in wavelength regulation. Mol Phylogenet Evol (1995) 0.87
New evidence for the role of heterochrony in the repeated evolution of cichlid opsin expression. Evol Dev (2011) 0.86
The relationship between lens transmission and opsin gene expression in cichlids from Lake Malawi. Vision Res (2009) 0.83
High molecular diversity in the rhodopsin gene in closely related goby fishes: A role for visual pigments in adaptive speciation? Mol Phylogenet Evol (2009) 0.82
Reverse evolution in RH1 for adaptation of cichlids to water depth in Lake Tanganyika. Mol Biol Evol (2010) 0.81
Molecular phylogeny of 48 species of damselfishes (Perciformes: Pomacentridae) using 12S mtDNA sequences. Mol Phylogenet Evol (2002) 0.77
Allelic variation in Malawi cichlid opsins: a tale of two genera. J Mol Evol (2010) 0.76
Speciation through sensory drive in cichlid fish. Nature (2008) 5.52
Nautilus pompilius life history and demographics at the Osprey Reef Seamount, Coral Sea, Australia. PLoS One (2011) 3.83
Vertical distribution and migration patterns of Nautilus pompilius. PLoS One (2011) 2.82
Ocean acidification slows retinal function in a damselfish through interference with GABAA receptors. J Exp Biol (2014) 2.40
Fluorescent signaling in parrots. Science (2002) 2.34
A second-generation genetic linkage map of tilapia (Oreochromis spp.). Genetics (2005) 2.20
Ultraviolet signals in birds are special. Proc Biol Sci (2003) 1.88
Mechanisms and behavioural functions of structural coloration in cephalopods. J R Soc Interface (2008) 1.86
Giant deep-sea protist produces bilaterian-like traces. Curr Biol (2008) 1.60
Mix and match color vision: tuning spectral sensitivity by differential opsin gene expression in Lake Malawi cichlids. Curr Biol (2005) 1.49
A BAC-based physical map of the Nile tilapia genome. BMC Genomics (2005) 1.46
Evolution of the cichlid visual palette through ontogenetic subfunctionalization of the opsin gene arrays. Mol Biol Evol (2006) 1.41
Are corals colorful? Photochem Photobiol (2006) 1.37
Dramatic colour changes in a bird of paradise caused by uniquely structured breast feather barbules. Proc Biol Sci (2010) 1.29
A spitting image: specializations in archerfish eyes for vision at the interface between air and water. Proc Biol Sci (2010) 1.24
Adaptive molecular evolution in the opsin genes of rapidly speciating cichlid species. Mol Biol Evol (2005) 1.23
The eyes have it: regulatory and structural changes both underlie cichlid visual pigment diversity. PLoS Biol (2009) 1.19
Electrophysiological evidence for linear polarization sensitivity in the compound eyes of the stomatopod crustacean Gonodactylus chiragra. J Exp Biol (2006) 1.18
Red fluorescence in reef fish: a novel signalling mechanism? BMC Ecol (2008) 1.16
Eggshell colour does not predict measures of maternal investment in eggs of Turdus thrushes. Naturwissenschaften (2008) 1.09
An EST resource for tilapia based on 17 normalized libraries and assembly of 116,899 sequence tags. BMC Genomics (2010) 1.05
Gene duplication and differential gene expression play an important role in the diversification of visual pigments in fish. Integr Comp Biol (2009) 1.00
Identification of amino acid residues responsible for the selectivity of tadalafil binding to two closely related phosphodiesterases, PDE5 and PDE6. J Biol Chem (2012) 0.98
Eye-size variability in deep-sea lanternfishes (Myctophidae): an ecological and phylogenetic study. PLoS One (2013) 0.97
Sea urchin tube feet are photosensory organs that express a rhabdomeric-like opsin and PAX6. Proc Biol Sci (2011) 0.97
Plasticity of opsin gene expression in cichlids from Lake Malawi. Mol Ecol (2010) 0.97
Parallel evolution of opsin gene expression in African cichlid fishes. Mol Biol Evol (2010) 0.96
Multiple cone visual pigments and the potential for trichromatic colour vision in two species of elasmobranch. J Exp Biol (2004) 0.95
Mimicry, colour forms and spectral sensitivity of the bluestriped fangblenny, Plagiotremus rhinorhynchos. Proc Biol Sci (2009) 0.93
The fish eye view: are cichlids conspicuous? J Exp Biol (2010) 0.93
Colour vision and response bias in a coral reef fish. J Exp Biol (2013) 0.92
Limited variation in visual sensitivity among bowerbird species suggests that there is no link between spectral tuning and variation in display colouration. J Exp Biol (2012) 0.92
Blue and yellow signal cleaning behavior in coral reef fishes. Curr Biol (2009) 0.90
A novel function for a carotenoid: astaxanthin used as a polarizer for visual signalling in a mantis shrimp. J Exp Biol (2012) 0.89
Facultative mimicry: cues for colour change and colour accuracy in a coral reef fish. Proc Biol Sci (2008) 0.88
Intraspecific cone opsin expression variation in the cichlids of Lake Malawi. Mol Ecol (2010) 0.87
Polarization sensitivity as a contrast enhancer in pelagic predators: lessons from in situ polarization imaging of transparent zooplankton. Philos Trans R Soc Lond B Biol Sci (2011) 0.86
New evidence for the role of heterochrony in the repeated evolution of cichlid opsin expression. Evol Dev (2011) 0.86
Filtering and polychromatic vision in mantis shrimps: themes in visible and ultraviolet vision. Philos Trans R Soc Lond B Biol Sci (2014) 0.86
Photoreceptor projection and termination pattern in the lamina of gonodactyloid stomatopods (mantis shrimp). Cell Tissue Res (2005) 0.85
Behavioural evidence for colour vision in an elasmobranch. J Exp Biol (2011) 0.84
The relationship between lens transmission and opsin gene expression in cichlids from Lake Malawi. Vision Res (2009) 0.83
Behavioural relevance of polarization sensitivity as a target detection mechanism in cephalopods and fishes. Philos Trans R Soc Lond B Biol Sci (2011) 0.83
Evolution of cichlid vision via trans-regulatory divergence. BMC Evol Biol (2012) 0.83
Divergence in cis-regulatory sequences surrounding the opsin gene arrays of African cichlid fishes. BMC Evol Biol (2011) 0.82
An evaluation of the role of sensory drive in the evolution of lake Malawi cichlid fishes. Int J Evol Biol (2012) 0.81
The prototype effect revisited: Evidence for an abstract feature model of face recognition. J Vis (2008) 0.81
High e-vector acuity in the polarisation vision system of the fiddler crab Uca vomeris. J Exp Biol (2012) 0.81
Quantification of vitellogenin-mRNA during maturation and breeding of a burying beetle. J Insect Physiol (2005) 0.80
Corneal microprojections in coleoid cephalopods. J Comp Physiol A Neuroethol Sens Neural Behav Physiol (2012) 0.80
High levels of reflectivity and pointillist structural color in fish, cephalopods, and beetles. Proc Natl Acad Sci U S A (2012) 0.80
Ultraviolet polarisation sensitivity in the stomatopod crustacean Odontodactylus scyllarus. J Comp Physiol A Neuroethol Sens Neural Behav Physiol (2009) 0.80
Polarization distance: a framework for modelling object detection by polarization vision systems. Proc Biol Sci (2013) 0.80
Neuroarchitecture of the color and polarization vision system of the stomatopod Haptosquilla. J Comp Neurol (2003) 0.80
A comparison of the external morphology of the membranous inner ear in elasmobranchs. J Morphol (2010) 0.79
The eyes of lanternfishes (Myctophidae, Teleostei): novel ocular specializations for vision in dim light. J Comp Neurol (2014) 0.79
Spectral tuning in the eyes of deep-sea lanternfishes (Myctophidae): a novel sexually dimorphic intra-ocular filter. Brain Behav Evol (2015) 0.78
Occlusable corneas in toadfishes: light transmission, movement and ultrastruture of pigment during light- and dark-adaptation. J Exp Biol (2003) 0.78
Mistaken identity? Visual similarities of marine debris to natural prey items of sea turtles. BMC Ecol (2014) 0.78
Retinal ganglion cell distribution and spatial resolving power in deep-sea lanternfishes (Myctophidae). Brain Behav Evol (2014) 0.77
Visual ecology of the Australian lungfish (Neoceratodus forsteri). BMC Ecol (2008) 0.77
Independent and conjugate eye movements during optokinesis in teleost fish. J Exp Biol (2002) 0.77
Allelic variation in Malawi cichlid opsins: a tale of two genera. J Mol Evol (2010) 0.76
Ultraviolet-B wavelengths regulate changes in UV absorption of cleaner fish Labroides dimidiatus mucus. PLoS One (2013) 0.75
Exogenous material in the inner ear of the adult Port Jackson shark, Heterodontus portusjacksoni (Elasmbranchii). Anat Rec (Hoboken) (2011) 0.75
Opsin Expression in the Central Nervous System of the Mantis Shrimp Neogonodactylus oerstedii. Biol Bull (2017) 0.75
Rose-colored goggles. Heredity (Edinb) (2003) 0.75