Published in Stat Appl Genet Mol Biol on October 27, 2011
What Population Reveals about Individual Cell Identity: Single-Cell Parameter Estimation of Models of Gene Expression in Yeast. PLoS Comput Biol (2016) 0.84
Stochastic sensitivity analysis and kernel inference via distributional data. Biophys J (2014) 0.78
AABC: approximate approximate Bayesian computation for inference in population-genetic models. Theor Popul Biol (2014) 0.77
Construction of a genetic toggle switch in Escherichia coli. Nature (2000) 24.02
Approximate Bayesian computation in population genetics. Genetics (2002) 13.06
Markov chain Monte Carlo without likelihoods. Proc Natl Acad Sci U S A (2003) 5.67
Sequential Monte Carlo without likelihoods. Proc Natl Acad Sci U S A (2007) 3.42
Statistical mixture modeling for cell subtype identification in flow cytometry. Cytometry A (2008) 3.06
A bistable Rb-E2F switch underlies the restriction point. Nat Cell Biol (2008) 2.91
Emergent bistability by a growth-modulating positive feedback circuit. Nat Chem Biol (2009) 2.86
Understanding GPU Programming for Statistical Computation: Studies in Massively Parallel Massive Mixtures. J Comput Graph Stat (2010) 2.38
Simulation-based model selection for dynamical systems in systems and population biology. Bioinformatics (2009) 2.27
Image segmentation and dynamic lineage analysis in single-cell fluorescence microscopy. Cytometry A (2010) 1.75
Lactic acidosis triggers starvation response with paradoxical induction of TXNIP through MondoA. PLoS Genet (2010) 1.34
Origin of bistability underlying mammalian cell cycle entry. Mol Syst Biol (2011) 1.32
On optimal selection of summary statistics for approximate Bayesian computation. Stat Appl Genet Mol Biol (2010) 1.28
Efficient Classification-Based Relabeling in Mixture Models. Am Stat (2011) 1.06
A bayesian analysis strategy for cross-study translation of gene expression biomarkers. Stat Appl Genet Mol Biol (2009) 1.04
Gene expression phenotypes of oncogenic signaling pathways. Cell Cycle (2003) 0.95
Modeling biological systems using Dynetica--a simulator of dynamic networks. Bioinformatics (2003) 0.90
Computation of steady-state probability distributions in stochastic models of cellular networks. PLoS Comput Biol (2011) 0.86
Oncogenic pathway signatures in human cancers as a guide to targeted therapies. Nature (2005) 19.56
Gene expression predictors of breast cancer outcomes. Lancet (2003) 6.99
Retracted A genomic strategy to refine prognosis in early-stage non-small-cell lung cancer. N Engl J Med (2006) 6.69
Retracted An integrated genomic-based approach to individualized treatment of patients with advanced-stage ovarian cancer. J Clin Oncol (2007) 5.77
High-Dimensional Sparse Factor Modeling: Applications in Gene Expression Genomics. J Am Stat Assoc (2008) 3.92
Gene expression phenotypic models that predict the activity of oncogenic pathways. Nat Genet (2003) 3.78
Long-term monitoring of bacteria undergoing programmed population control in a microchemostat. Science (2005) 3.54
Engineering microbial consortia: a new frontier in synthetic biology. Trends Biotechnol (2008) 3.26
Statistical mixture modeling for cell subtype identification in flow cytometry. Cytometry A (2008) 3.06
A synthetic Escherichia coli predator-prey ecosystem. Mol Syst Biol (2008) 2.92
A bistable Rb-E2F switch underlies the restriction point. Nat Cell Biol (2008) 2.91
Emergent bistability by a growth-modulating positive feedback circuit. Nat Chem Biol (2009) 2.86
Integrated modeling of clinical and gene expression information for personalized prediction of disease outcomes. Proc Natl Acad Sci U S A (2004) 2.74
Gene expression profiling and genetic markers in glioblastoma survival. Cancer Res (2005) 2.63
Understanding GPU Programming for Statistical Computation: Studies in Massively Parallel Massive Mixtures. J Comput Graph Stat (2010) 2.38
Patterns of gene expression that characterize long-term survival in advanced stage serous ovarian cancers. Clin Cancer Res (2005) 2.37
Gene expression phenotypes of atherosclerosis. Arterioscler Thromb Vasc Biol (2004) 2.23
A genomic strategy to elucidate modules of oncogenic pathway signaling networks. Mol Cell (2009) 2.22
Image segmentation and dynamic lineage analysis in single-cell fluorescence microscopy. Cytometry A (2010) 1.75
Gene expression profiles of multiple breast cancer phenotypes and response to neoadjuvant chemotherapy. Clin Cancer Res (2006) 1.72
The genomic analysis of lactic acidosis and acidosis response in human cancers. PLoS Genet (2008) 1.60
Spatial Mixture Modelling for Unobserved Point Processes: Examples in Immunofluorescence Histology. Bayesian Anal (2009) 1.58
Genomic prediction of locoregional recurrence after mastectomy in breast cancer. J Clin Oncol (2006) 1.57
Towards integrated clinico-genomic models for personalized medicine: combining gene expression signatures and clinical factors in breast cancer outcomes prediction. Hum Mol Genet (2003) 1.51
Hierarchical modeling for rare event detection and cell subset alignment across flow cytometry samples. PLoS Comput Biol (2013) 1.35
Lactic acidosis triggers starvation response with paradoxical induction of TXNIP through MondoA. PLoS Genet (2010) 1.34
Distinctions in the specificity of E2F function revealed by gene expression signatures. Proc Natl Acad Sci U S A (2005) 1.34
Biology by design: reduction and synthesis of cellular components and behaviour. J R Soc Interface (2007) 1.33
Origin of bistability underlying mammalian cell cycle entry. Mol Syst Biol (2011) 1.32
Prediction of optimal versus suboptimal cytoreduction of advanced-stage serous ovarian cancer with the use of microarrays. Am J Obstet Gynecol (2004) 1.29
Prediction and uncertainty in the analysis of gene expression profiles. In Silico Biol (2002) 1.27
Optimality and robustness in quorum sensing (QS)-mediated regulation of a costly public good enzyme. Proc Natl Acad Sci U S A (2012) 1.27
Distinct gene expression phenotypes of cells lacking Rb and Rb family members. Cancer Res (2003) 1.26
Network calisthenics: control of E2F dynamics in cell cycle entry. Cell Cycle (2011) 1.25
Bayesian analysis of matrix normal graphical models. Biometrika (2009) 1.18
An integrative approach to characterize disease-specific pathways and their coordination: a case study in cancer. BMC Genomics (2008) 1.14
A synthetic biology challenge: making cells compute. Mol Biosyst (2007) 1.14
Noise reduction by diffusional dissipation in a minimal quorum sensing motif. PLoS Comput Biol (2008) 1.12
Optimal tuning of bacterial sensing potential. Mol Syst Biol (2009) 1.12
Temporal control of self-organized pattern formation without morphogen gradients in bacteria. Mol Syst Biol (2013) 1.11
Molecular evidence for arterial repair in atherosclerosis. Proc Natl Acad Sci U S A (2005) 1.09
Efficient Classification-Based Relabeling in Mixture Models. Am Stat (2011) 1.06
Spatiotemporal modulation of biodiversity in a synthetic chemical-mediated ecosystem. Nat Chem Biol (2009) 1.05
A bayesian analysis strategy for cross-study translation of gene expression biomarkers. Stat Appl Genet Mol Biol (2009) 1.04
Gene expression profiling for prediction of clinical characteristics of breast cancer. Recent Prog Horm Res (2003) 1.04
Programming stress-induced altruistic death in engineered bacteria. Mol Syst Biol (2012) 1.03
Viral-mediated noisy gene expression reveals biphasic E2f1 response to MYC. Mol Cell (2011) 1.03
Sensing and integration of Erk and PI3K signals by Myc. PLoS Comput Biol (2008) 1.03
Stochastic E2F activation and reconciliation of phenomenological cell-cycle models. PLoS Biol (2010) 1.03
Bayesian analysis of binary prediction tree models for retrospectively sampled outcomes. Biostatistics (2004) 1.02
Oscillations by minimal bacterial suicide circuits reveal hidden facets of host-circuit physiology. PLoS One (2010) 1.02
Noise-limited frequency signal transmission in gene circuits. Biophys J (2007) 0.99
A programmable microenvironment for cellular studies via microfluidics-generated double emulsions. Biomaterials (2013) 0.99
Engineering microbial systems to explore ecological and evolutionary dynamics. Curr Opin Biotechnol (2012) 0.99
Prognostic index score and clinical prediction model of local regional recurrence after mastectomy in breast cancer patients. Int J Radiat Oncol Biol Phys (2006) 0.97
Cross-study projections of genomic biomarkers: an evaluation in cancer genomics. PLoS One (2009) 0.96
The inoculum effect and band-pass bacterial response to periodic antibiotic treatment. Mol Syst Biol (2012) 0.96
Hierarchical Bayesian mixture modelling for antigen-specific T-cell subtyping in combinatorially encoded flow cytometry studies. Stat Appl Genet Mol Biol (2013) 0.95
Gene expression phenotypes of oncogenic signaling pathways. Cell Cycle (2003) 0.95
Engineering multicellular systems by cell-cell communication. Curr Opin Biotechnol (2009) 0.92
Optimization of a highly standardized carboxyfluorescein succinimidyl ester flow cytometry panel and gating strategy design using discriminative information measure evaluation. Cytometry A (2010) 0.92
Decoding biological principles using gene circuits. Mol Biosyst (2009) 0.90
Programmed cell death in bacteria and implications for antibiotic therapy. Trends Microbiol (2013) 0.89
Programmed Allee effect in bacteria causes a tradeoff between population spread and survival. Proc Natl Acad Sci U S A (2014) 0.89
Signal discrimination by differential regulation of protein stability in quorum sensing. J Mol Biol (2008) 0.88
A synthetic biology approach to understanding cellular information processing. ACS Synth Biol (2012) 0.87
Bayesian Weibull tree models for survival analysis of clinico-genomic data. Stat Methodol (2008) 0.87
Selection Sampling from Large Data Sets for Targeted Inference in Mixture Modeling. Bayesian Anal (2010) 0.87
FOXO transcription factors control E2F1 transcriptional specificity and apoptotic function. Cancer Res (2013) 0.87
Retraction: A genomic strategy to refine prognosis in early-stage non-small-cell lung cancer. N Engl J Med 2006;355:570-80. N Engl J Med (2011) 0.87
Proliferation behavior of E. coli in a three-dimensional in vitro tumor model. Integr Biol (Camb) (2011) 0.86
Computation of steady-state probability distributions in stochastic models of cellular networks. PLoS Comput Biol (2011) 0.86
Adaptive Mixture Modelling Metropolis Methods for Bayesian Analysis of Non-linear State-Space Models. J Comput Graph Stat (2010) 0.86
Synthetic biology: Division of logic labour. Nature (2011) 0.85
Productive work and employment for persons with traumatic brain injury: what have we learned after 20 years? J Head Trauma Rehabil (2005) 0.85
Tension and robustness in multitasking cellular networks. PLoS Comput Biol (2012) 0.82
Programming microbial population dynamics by engineered cell-cell communication. Biotechnol J (2011) 0.80
Engineered cell-cell communication and its applications. Adv Biochem Eng Biotechnol (2014) 0.80
A brave new synthetic world. A report of the first meeting on 'Frontiers in Synthetic Biology', Boston, USA, 1-2 December 2008. Genome Biol (2009) 0.80
Evolving sensitivity. ACS Chem Biol (2006) 0.80
Generic metric to quantify quorum sensing activation dynamics. ACS Synth Biol (2013) 0.79
AN INTEGRATIVE ANALYSIS OF CANCER GENE EXPRESSION STUDIES USING BAYESIAN LATENT FACTOR MODELING. Ann Appl Stat (2009) 0.79
Bayesian Learning in Sparse Graphical Factor Models via Variational Mean-Field Annealing. J Mach Learn Res (2010) 0.78
Cell biology. Cells listen to their inner voice. Science (2014) 0.78
Model-controlled flooding with applications to image reconstruction and segmentation. J Electron Imaging (2012) 0.77
DIG--a system for gene annotation and functional discovery. Bioinformatics (2005) 0.77
Addressing biological uncertainties in engineering gene circuits. Integr Biol (Camb) (2015) 0.77
Quantitative analysis of the spatiotemporal dynamics of a synthetic predator-prey ecosystem. Methods Mol Biol (2012) 0.76
Of cardiovascular illness and diversity of biological response. Trends Cardiovasc Med (2008) 0.76
A whole more than the sum of its synthetic parts. ACS Chem Biol (2008) 0.76
A different life? Curr Opin Chem Biol (2012) 0.75
Development of a high-speed, multiplexed sample-delivery instrument for LC-MS/MS bioanalysis. Bioanalysis (2012) 0.75
Modeling spatiotemporal dynamics of bacterial populations. Methods Mol Biol (2012) 0.75
Using noisy gene expression mediated by engineered adenovirus to probe signaling dynamics in mammalian cells. Methods Enzymol (2011) 0.75
Promoting collaborative interdisciplinary research at the Duke Center for Systems Biology. ACS Synth Biol (2012) 0.75
An overview of genomic data analysis. Surgery (2004) 0.75