Characterization of Chromatin Structure-associated Histone Modifications in Breast Cancer Cells.

PubWeight™: 0.81‹?›

🔗 View Article (PMC 3492650)

Published in Genomics Inform on September 28, 2012

Authors

Chang Pyo Hong1, Moon Kyung Choe, Tae-Young Roh

Author Affiliations

1: Division of Molecular and Life Sciences, Pohang University of Science and Technology, Pohang 790-784, Korea. ; Theragen Etex Bio Institute, Suwon 443-270, Korea.

Articles cited by this

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc (2009) 137.99

High-resolution profiling of histone methylations in the human genome. Cell (2007) 85.74

Chromatin modifications and their function. Cell (2007) 55.98

The fundamental role of epigenetic events in cancer. Nat Rev Genet (2002) 30.05

Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol Cell (2010) 23.97

MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res (2009) 23.27

Combinatorial patterns of histone acetylations and methylations in the human genome. Nat Genet (2008) 18.28

Dynamic regulation of nucleosome positioning in the human genome. Cell (2008) 15.60

CTCF: master weaver of the genome. Cell (2009) 15.09

An integrated software system for analyzing ChIP-chip and ChIP-seq data. Nat Biotechnol (2008) 13.96

Phenotypic plasticity and the epigenetics of human disease. Nature (2007) 10.37

Breast cancer metastasis: markers and models. Nat Rev Cancer (2005) 9.93

Quantifying similarity between motifs. Genome Biol (2007) 9.27

FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin. Genome Res (2006) 7.72

Methylation of histone H3 Lys 4 in coding regions of active genes. Proc Natl Acad Sci U S A (2002) 7.67

Charting histone modifications and the functional organization of mammalian genomes. Nat Rev Genet (2010) 7.39

Active chromatin domains are defined by acetylation islands revealed by genome-wide mapping. Genes Dev (2005) 7.21

The genomic landscape of histone modifications in human T cells. Proc Natl Acad Sci U S A (2006) 6.09

Chromatin organization marks exon-intron structure. Nat Struct Mol Biol (2009) 5.90

High-throughput mapping of the chromatin structure of human promoters. Nat Biotechnol (2007) 5.24

Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity. Genome Res (2011) 4.43

Genome-wide approaches to studying chromatin modifications. Nat Rev Genet (2008) 4.28

seqMINER: an integrated ChIP-seq data interpretation platform. Nucleic Acids Res (2010) 3.74

Cell cycle-specified fluctuation of nucleosome occupancy at gene promoters. PLoS Genet (2006) 3.08

High-resolution genome-wide mapping of histone modifications. Nat Biotechnol (2004) 2.69

Chromatin remodeling and cancer, Part I: Covalent histone modifications. Trends Mol Med (2007) 2.60

Genomewide demarcation of RNA polymerase II transcription units revealed by physical fractionation of chromatin. Proc Natl Acad Sci U S A (2003) 2.33

Histone modifying enzymes: structures, mechanisms, and specificities. Biochim Biophys Acta (2008) 2.07

Epigenetic switch involved in activation of pioneer factor FOXA1-dependent enhancers. Genome Res (2011) 1.92

Cell-type selective chromatin remodeling defines the active subset of FOXA1-bound enhancers. Genome Res (2009) 1.89

TRPS1 targeting by miR-221/222 promotes the epithelial-to-mesenchymal transition in breast cancer. Sci Signal (2011) 1.81

A genome-wide analysis in Saccharomyces cerevisiae demonstrates the influence of chromatin modifiers on transcription. Nat Genet (2007) 1.53

Global mapping of cell type-specific open chromatin by FAIRE-seq reveals the regulatory role of the NFI family in adipocyte differentiation. PLoS Genet (2011) 1.24

Chromatin landscape: methylation beyond transcription. Epigenetics (2011) 1.12

The epigenome and plant development. Annu Rev Plant Biol (2011) 1.09

Tumor markers in breast cancer--evaluation of their clinical usefulness. Coll Antropol (2011) 0.96

Functional elements demarcated by histone modifications in breast cancer cells. Biochem Biophys Res Commun (2012) 0.91

Global mapping of H3K4me1 and H3K4me3 reveals the chromatin state-based cell type-specific gene regulation in human Treg cells. PLoS One (2011) 0.87

Epigenetic regulation in cell reprogramming revealed by genome-wide analysis. Epigenomics (2011) 0.79

Articles by these authors

High-resolution profiling of histone methylations in the human genome. Cell (2007) 85.74

Combinatorial patterns of histone acetylations and methylations in the human genome. Nat Genet (2008) 18.28

Dynamic regulation of nucleosome positioning in the human genome. Cell (2008) 15.60

Global mapping of H3K4me3 and H3K27me3 reveals specificity and plasticity in lineage fate determination of differentiating CD4+ T cells. Immunity (2009) 9.73

Chromatin signatures in multipotent human hematopoietic stem cells indicate the fate of bivalent genes during differentiation. Cell Stem Cell (2009) 8.62

Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains. Genome Res (2008) 7.41

Priming for T helper type 2 differentiation by interleukin 2-mediated induction of interleukin 4 receptor alpha-chain expression. Nat Immunol (2008) 2.31

Chromatin poises miRNA- and protein-coding genes for expression. Genome Res (2009) 2.28

Genome-wide analysis of histone methylation reveals chromatin state-based regulation of gene transcription and function of memory CD8+ T cells. Immunity (2009) 2.11

Induction of pluripotent stem cells from adult somatic cells by protein-based reprogramming without genetic manipulation. Blood (2010) 1.77

Bioinspired exosome-mimetic nanovesicles for targeted delivery of chemotherapeutics to malignant tumors. ACS Nano (2013) 1.23

DNA-binding motif and target genes of the imprinted transcription factor PEG3. Gene (2012) 1.15

Extracellular vesicles derived from gut microbiota, especially Akkermansia muciniphila, protect the progression of dextran sulfate sodium-induced colitis. PLoS One (2013) 1.13

Genomic profiling of HMGN1 reveals an association with chromatin at regulatory regions. Mol Cell Biol (2010) 1.12

Synthetic RNA devices to expedite the evolution of metabolite-producing microbes. Nat Commun (2013) 1.02

Immunization with Escherichia coli outer membrane vesicles protects bacteria-induced lethality via Th1 and Th17 cell responses. J Immunol (2013) 1.00

Staphylococcus aureus extracellular vesicles carry biologically active β-lactamase. Antimicrob Agents Chemother (2013) 1.00

A novel human polycomb binding site acts as a functional polycomb response element in Drosophila. PLoS One (2012) 0.93

Aebp2 as an epigenetic regulator for neural crest cells. PLoS One (2011) 0.92

Functional elements demarcated by histone modifications in breast cancer cells. Biochem Biophys Res Commun (2012) 0.91

Polycomb group protein-mediated histone modifications during cell differentiation. Epigenomics (2015) 0.85

Gene silencing in HIV-1 latency by polycomb repressive group. Virol J (2011) 0.84

Genome-wide analysis of histone modifications in latently HIV-1 infected T cells. AIDS (2014) 0.84

The effect of CD4 receptor downregulation and its downstream signaling molecules on HIV-1 latency. Biochem Biophys Res Commun (2010) 0.81

NUCKS1, a novel Tat coactivator, plays a crucial role in HIV-1 replication by increasing Tat-mediated viral transcription on the HIV-1 LTR promoter. Retrovirology (2014) 0.81

Airway activation of formyl peptide receptors inhibits Th1 and Th17 cell responses via inhibition of mediator release from immune and inflammatory cells and maturation of dendritic cells. J Immunol (2012) 0.80

Epigenetic regulation in cell reprogramming revealed by genome-wide analysis. Epigenomics (2011) 0.79

Transcription-related element gene expression pattern differs between microglia and macrophages during inflammation. Inflamm Res (2014) 0.78