PubRank

Helen M Berman

Author PubWeight™ 132.63‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 The Protein Data Bank: unifying the archive. Nucleic Acids Res 2002 12.37
2 The Protein Data Bank and structural genomics. Nucleic Acids Res 2003 8.34
3 The RCSB Protein Data Bank: a redesigned query system and relational database based on the mmCIF schema. Nucleic Acids Res 2005 7.81
4 The RCSB Protein Data Bank: redesigned web site and web services. Nucleic Acids Res 2010 7.68
5 The distribution and query systems of the RCSB Protein Data Bank. Nucleic Acids Res 2004 7.03
6 The RCSB PDB information portal for structural genomics. Nucleic Acids Res 2006 6.36
7 RNA backbone: consensus all-angle conformers and modular string nomenclature (an RNA Ontology Consortium contribution). RNA 2008 5.94
8 The RCSB Protein Data Bank: new resources for research and education. Nucleic Acids Res 2012 5.73
9 Remediation of the protein data bank archive. Nucleic Acids Res 2007 4.89
10 Outcome of the first electron microscopy validation task force meeting. Structure 2012 4.35
11 TargetDB: a target registration database for structural genomics projects. Bioinformatics 2004 4.17
12 PDBML: the representation of archival macromolecular structure data in XML. Bioinformatics 2004 3.64
13 The RNA Ontology Consortium: an open invitation to the RNA community. RNA 2006 3.60
14 EMDataBank.org: unified data resource for CryoEM. Nucleic Acids Res 2010 3.32
15 Automated and accurate deposition of structures solved by X-ray diffraction to the Protein Data Bank. Acta Crystallogr D Biol Crystallogr 2004 3.11
16 Catabolite activator protein: DNA binding and transcription activation. Curr Opin Struct Biol 2004 2.91
17 Structural basis of transcription activation: the CAP-alpha CTD-DNA complex. Science 2002 2.67
18 Using electrostatic potentials to predict DNA-binding sites on DNA-binding proteins. Nucleic Acids Res 2003 2.37
19 Data deposition and annotation at the worldwide protein data bank. Mol Biotechnol 2008 2.30
20 Ligand Depot: a data warehouse for ligands bound to macromolecules. Bioinformatics 2004 2.21
21 Outcome of a workshop on applications of protein models in biomedical research. Structure 2009 2.05
22 The Protein Model Portal. J Struct Funct Genomics 2008 2.01
23 RNA conformational classes. Nucleic Acids Res 2004 1.92
24 BioMagResBank (BMRB) as a partner in the Worldwide Protein Data Bank (wwPDB): new policies affecting biomolecular NMR depositions. J Biomol NMR 2008 1.89
25 Validation of protein structures for protein data bank. Methods Enzymol 2003 1.73
26 Recommendations of the wwPDB NMR Validation Task Force. Structure 2013 1.57
27 Report of the wwPDB Small-Angle Scattering Task Force: data requirements for biomolecular modeling and the PDB. Structure 2013 1.39
28 The Structural Biology Knowledgebase: a portal to protein structures, sequences, functions, and methods. J Struct Funct Genomics 2011 1.36
29 Large macromolecular complexes in the Protein Data Bank: a status report. Structure 2005 1.36
30 Three-dimensional EM structure of an intact activator-dependent transcription initiation complex. Proc Natl Acad Sci U S A 2009 1.26
31 The Nucleic Acid Database: new features and capabilities. Nucleic Acids Res 2013 1.23
32 Signatures of protein-DNA recognition in free DNA binding sites. J Mol Biol 2009 1.17
33 Promoting a structural view of biology for varied audiences: an overview of RCSB PDB resources and experiences. J Appl Crystallogr 2010 1.09
34 Representation of viruses in the remediated PDB archive. Acta Crystallogr D Biol Crystallogr 2008 1.08
35 Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: recognition of pyrimidine-purine and purine-purine steps. J Mol Biol 2006 1.07
36 Future structural genomics initiatives: an interview with Helen Berman, director of the Protein Data Bank. Interview by Wendy A Warr. J Comput Aided Mol Des 2008 1.07
37 Improving the representation of peptide-like inhibitor and antibiotic molecules in the Protein Data Bank. Biopolymers 2014 1.06
38 The Protein Structure Initiative Structural Biology Knowledgebase Technology Portal: a structural biology web resource. J Struct Funct Genomics 2012 1.00
39 Data deposition and annotation at the worldwide protein data bank. Methods Mol Biol 2008 1.00
40 Chemical annotation of small and peptide-like molecules at the Protein Data Bank. Database (Oxford) 2013 0.99
41 Statistical models for discerning protein structures containing the DNA-binding helix-turn-helix motif. J Mol Biol 2003 0.96
42 Conformational effects of Gly-X-Gly interruptions in the collagen triple helix. J Mol Biol 2006 0.89
43 Realism about PDB. Nat Biotechnol 2007 0.89
44 Safeguarding the integrity of protein archive. Nature 2010 0.84
45 The Protein Data Bank and lessons in data management. Brief Bioinform 2004 0.84
46 E. coli trp repressor forms a domain-swapped array in aqueous alcohol. Structure 2004 0.82
47 Workshop on the validation and modeling of electron cryo-microscopy structures of biological nanomachines. Pac Symp Biocomput 2011 0.81
48 Revealing structural views of biology. Biopolymers 2013 0.79
49 A structure-based method for identifying DNA-binding proteins and their sites of DNA-interaction. J Struct Funct Genomics 2004 0.78
50 Quality assurance for the query and distribution systems of the RCSB Protein Data Bank. Database (Oxford) 2011 0.77
51 Fundamentals of DNA and RNA structure. Methods Biochem Anal 2003 0.75
52 27 Analysis of DNA deformations in transcription factor-DNA complexes. J Biomol Struct Dyn 2015 0.75
53 Protein structure annotation resources. Methods Mol Biol 2015 0.75