Published in Infect Immun on January 14, 2013
Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile. Nature (2014) 5.51
Role of the microbiota in immunity and inflammation. Cell (2014) 3.43
Microbiota-mediated colonization resistance against intestinal pathogens. Nat Rev Immunol (2013) 2.89
Control of pathogens and pathobionts by the gut microbiota. Nat Immunol (2013) 2.84
Ecological modeling from time-series inference: insight into dynamics and stability of intestinal microbiota. PLoS Comput Biol (2013) 2.16
Computational meta'omics for microbial community studies. Mol Syst Biol (2013) 1.84
How informative is the mouse for human gut microbiota research? Dis Model Mech (2015) 1.79
Obese-type gut microbiota induce neurobehavioral changes in the absence of obesity. Biol Psychiatry (2014) 1.75
Epithelial IL-22RA1-mediated fucosylation promotes intestinal colonization resistance to an opportunistic pathogen. Cell Host Microbe (2014) 1.66
Pretreatment gut microbiome predicts chemotherapy-related bloodstream infection. Genome Med (2016) 1.47
Diarrhea in young children from low-income countries leads to large-scale alterations in intestinal microbiota composition. Genome Biol (2014) 1.24
The gut microbiota plays a protective role in the host defence against pneumococcal pneumonia. Gut (2015) 1.23
Microbiota-mediated inflammation and antimicrobial defense in the intestine. Annu Rev Immunol (2015) 1.23
Towards predictive models of the human gut microbiome. J Mol Biol (2014) 1.09
Intestinal anastomotic injury alters spatially defined microbiome composition and function. Microbiome (2014) 1.04
The intestinal microbiota and susceptibility to infection in immunocompromised patients. Curr Opin Infect Dis (2013) 1.01
From Hype to Hope: The Gut Microbiota in Enteric Infectious Disease. Cell (2015) 1.01
Inference of Network Dynamics and Metabolic Interactions in the Gut Microbiome. PLoS Comput Biol (2015) 0.99
Emerging insights on intestinal dysbiosis during bacterial infections. Curr Opin Microbiol (2013) 0.99
Public health evolutionary biology of antimicrobial resistance: priorities for intervention. Evol Appl (2014) 0.97
Fecal microbiota transplantation: effectiveness, complexities, and lingering concerns. Mucosal Immunol (2014) 0.95
Resurrecting the intestinal microbiota to combat antibiotic-resistant pathogens. Science (2016) 0.94
Antibiotic-Induced Changes in the Intestinal Microbiota and Disease. Trends Mol Med (2016) 0.94
Commensal bacteria mediated defenses against pathogens. Curr Opin Immunol (2014) 0.93
The prevention and management of infections due to multidrug resistant organisms in haematology patients. Br J Clin Pharmacol (2015) 0.92
Distinct but Spatially Overlapping Intestinal Niches for Vancomycin-Resistant Enterococcus faecium and Carbapenem-Resistant Klebsiella pneumoniae. PLoS Pathog (2015) 0.87
Loss of Vancomycin-Resistant Enterococcus Fecal Dominance in an Organ Transplant Patient With Clostridium difficile Colitis After Fecal Microbiota Transplant. Open Forum Infect Dis (2015) 0.86
Modified lactic acid bacteria detect and inhibit multiresistant enterococci. ACS Synth Biol (2014) 0.86
Fecal Microbiota Transplantation Inhibits Multidrug-Resistant Gut Pathogens: Preliminary Report Performed in an Immunocompromised Host. Arch Immunol Ther Exp (Warsz) (2016) 0.84
Causes, consequences, and perspectives in the variations of intestinal density of colonization of multidrug-resistant enterobacteria. Front Microbiol (2013) 0.83
Intestinal microbiome changes and stem cell transplantation: Lessons learned. Virulence (2016) 0.82
Respiratory microbiota dynamics following Streptococcus pneumoniae acquisition in young and elderly mice. Infect Immun (2014) 0.81
Bacterial colonization and intestinal mucosal barrier development. World J Clin Pediatr (2013) 0.81
Beyond Antibiotics: New Therapeutic Approaches for Bacterial Infections. Clin Infect Dis (2016) 0.80
Refractory Clostridium difficile Infection Cured With Fecal Microbiota Transplantation in Vancomycin-Resistant Enterococcus Colonized Patient. Intest Res (2015) 0.80
The rest of the story: the microbiome and gastrointestinal infections. Curr Opin Microbiol (2014) 0.80
Adaptive immunity increases the pace and predictability of evolutionary change in commensal gut bacteria. Nat Commun (2015) 0.79
The gut microbiome in autoimmunity: Sex matters. Clin Immunol (2015) 0.79
Predominance of Lactobacillus spp. Among Patients Who Do Not Acquire Multidrug-Resistant Organisms. Clin Infect Dis (2016) 0.78
Invasive gram-positive bacterial infection in cancer patients. Clin Infect Dis (2014) 0.78
Roles of Commensal Microbiota in Pancreas Homeostasis and Pancreatic Pathologies. J Diabetes Res (2015) 0.77
Microbial approaches for targeting antibiotic-resistant bacteria. Microb Biotechnol (2017) 0.77
HIV-associated changes in the enteric microbial community: potential role in loss of homeostasis and development of systemic inflammation. Curr Opin Infect Dis (2016) 0.76
The human microbiota: novel targets for hospital-acquired infections and antibiotic resistance. Ann Epidemiol (2016) 0.76
Individual-specific changes in the human gut microbiota after challenge with enterotoxigenic Escherichia coli and subsequent ciprofloxacin treatment. BMC Genomics (2016) 0.76
Reduction in fecal microbiota diversity and short-chain fatty acid producers in Methicillin-resistant Staphylococcus aureus infected individuals as revealed by PacBio single molecule, real-time sequencing technology. Eur J Clin Microbiol Infect Dis (2017) 0.76
Roles of the intestinal microbiota in pathogen protection. Clin Transl Immunology (2017) 0.75
RNA-Based Stable Isotope Probing Suggests Allobaculum spp. as Particularly Active Glucose Assimilators in a Complex Murine Microbiota Cultured In Vitro. Biomed Res Int (2017) 0.75
Carriage of Enterobacteria Producing Extended-Spectrum β-Lactamases and Composition of the Gut Microbiota in an Amerindian Community. Antimicrob Agents Chemother (2015) 0.75
Impact of Antibiotic Use on the Evolution of Enterococcus faecium. J Infect Dis (2015) 0.75
Bygiene: The New Paradigm of Bidirectional Hygiene. Yale J Biol Med (2015) 0.75
Inferring microbial interaction networks from metagenomic data using SgLV-EKF algorithm. BMC Genomics (2017) 0.75
Understanding Luminal Microorganisms and Their Potential Effectiveness in Treating Intestinal Inflammation. Inflamm Bowel Dis (2016) 0.75
Impact of birth weight and postnatal diet on the gut microbiota of young adult guinea pigs. PeerJ (2017) 0.75
THE POWER OF POOP: FECAL MICROBIOTA TRANSPLANTATION FOR CLOSTRIDIUM DIFFICILE INFECTION. Trans Am Clin Climatol Assoc (2016) 0.75
Gut microbiota from metabolic disease-resistant, macrophage-specific RIP140 knockdown mice improves metabolic phenotype and gastrointestinal integrity. Sci Rep (2016) 0.75
Effects of Consuming Xylitol on Gut Microbiota and Lipid Metabolism in Mice. Nutrients (2017) 0.75
Allied Commensal Forces against Vancomycin-Resistant Enterococci. Cell Host Microbe (2017) 0.75
Commensal microbes provide first line defense against Listeria monocytogenes infection. J Exp Med (2017) 0.75
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol (2009) 77.55
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol (2007) 60.97
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res (2007) 35.65
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. Genome Res (2011) 17.21
An immunomodulatory molecule of symbiotic bacteria directs maturation of the host immune system. Cell (2005) 15.46
Ironing out the wrinkles in the rare biosphere through improved OTU clustering. Environ Microbiol (2010) 13.19
Inflammasome-mediated dysbiosis regulates progression of NAFLD and obesity. Nature (2012) 10.74
NLRP6 inflammasome regulates colonic microbial ecology and risk for colitis. Cell (2011) 9.75
The fatal enteric cholera infection in the guinea pig, achieved by inhibition of normal enteric flora. J Infect Dis (1955) 7.19
Tracking a hospital outbreak of carbapenem-resistant Klebsiella pneumoniae with whole-genome sequencing. Sci Transl Med (2012) 6.63
Decreased diversity of the fecal Microbiome in recurrent Clostridium difficile-associated diarrhea. J Infect Dis (2008) 6.21
Effect of antibiotic therapy on the density of vancomycin-resistant enterococci in the stool of colonized patients. N Engl J Med (2000) 5.08
Vancomycin-resistant Enterococcus domination of intestinal microbiota is enabled by antibiotic treatment in mice and precedes bloodstream invasion in humans. J Clin Invest (2010) 4.95
Vancomycin-resistant enterococci exploit antibiotic-induced innate immune deficits. Nature (2008) 4.87
RESISTANCE OF THE MOUSE'S INTESTINAL TRACT TO EXPERIMENTAL SALMONELLA INFECTION. II. FACTORS RESPONSIBLE FOR ITS LOSS FOLLOWING STREPTOMYCIN TREATMENT. J Exp Med (1964) 3.80
Profound alterations of intestinal microbiota following a single dose of clindamycin results in sustained susceptibility to Clostridium difficile-induced colitis. Infect Immun (2011) 2.87
Intestinal domination and the risk of bacteremia in patients undergoing allogeneic hematopoietic stem cell transplantation. Clin Infect Dis (2012) 2.72
Exposure to a social stressor alters the structure of the intestinal microbiota: implications for stressor-induced immunomodulation. Brain Behav Immun (2010) 2.69
Bacterial flagellin stimulates Toll-like receptor 5-dependent defense against vancomycin-resistant Enterococcus infection. J Infect Dis (2010) 2.26
Antibiotic treatment alters the colonic mucus layer and predisposes the host to exacerbated Citrobacter rodentium-induced colitis. Infect Immun (2011) 2.24
The intestinal microbiota plays a role in Salmonella-induced colitis independent of pathogen colonization. PLoS One (2011) 1.57
Loss of sex and age driven differences in the gut microbiome characterize arthritis-susceptible 0401 mice but not arthritis-resistant 0402 mice. PLoS One (2012) 1.42
The effect of three frequently applied antibiotics on the colonization resistance of the digestive tract of mice. J Hyg (Lond) (1979) 1.02
Gut bacteria profiles of Mus musculus at the phylum and family levels are influenced by saturation of dietary fatty acids. Anaerobe (2012) 0.92
In vivo depletion of CD11c+ dendritic cells abrogates priming of CD8+ T cells by exogenous cell-associated antigens. Immunity (2002) 14.57
Monocyte emigration from bone marrow during bacterial infection requires signals mediated by chemokine receptor CCR2. Nat Immunol (2006) 11.06
Prognostic relevance of integrated genetic profiling in acute myeloid leukemia. N Engl J Med (2012) 10.20
Monocyte recruitment during infection and inflammation. Nat Rev Immunol (2011) 7.55
TNF/iNOS-producing dendritic cells mediate innate immune defense against bacterial infection. Immunity (2003) 7.33
Monocyte-mediated defense against microbial pathogens. Annu Rev Immunol (2008) 7.21
Expansion of intestinal Prevotella copri correlates with enhanced susceptibility to arthritis. Elife (2013) 5.49
Vancomycin-resistant Enterococcus domination of intestinal microbiota is enabled by antibiotic treatment in mice and precedes bloodstream invasion in humans. J Clin Invest (2010) 4.95
Vancomycin-resistant enterococci exploit antibiotic-induced innate immune deficits. Nature (2008) 4.87
Bone marrow mesenchymal stem and progenitor cells induce monocyte emigration in response to circulating toll-like receptor ligands. Immunity (2011) 3.88
MyD88-mediated signals induce the bactericidal lectin RegIII gamma and protect mice against intestinal Listeria monocytogenes infection. J Exp Med (2007) 3.79
2009 H1N1 influenza infection in cancer patients and hematopoietic stem cell transplant recipients. J Infect (2010) 3.56
The sociobiology of biofilms. FEMS Microbiol Rev (2008) 3.19
Regulation of intestinal inflammation by microbiota following allogeneic bone marrow transplantation. J Exp Med (2012) 3.17
Aspergillus fumigatus triggers inflammatory responses by stage-specific beta-glucan display. PLoS Pathog (2005) 3.01
Interleukin-22 protects intestinal stem cells from immune-mediated tissue damage and regulates sensitivity to graft versus host disease. Immunity (2012) 2.99
Interleukin-22 drives endogenous thymic regeneration in mice. Science (2012) 2.96
Regulation of B versus T lymphoid lineage fate decision by the proto-oncogene LRF. Science (2007) 2.92
Microbiota-mediated colonization resistance against intestinal pathogens. Nat Rev Immunol (2013) 2.89
Profound alterations of intestinal microbiota following a single dose of clindamycin results in sustained susceptibility to Clostridium difficile-induced colitis. Infect Immun (2011) 2.87
Inflammatory monocytes facilitate adaptive CD4 T cell responses during respiratory fungal infection. Cell Host Microbe (2009) 2.81
Intestinal domination and the risk of bacteremia in patients undergoing allogeneic hematopoietic stem cell transplantation. Clin Infect Dis (2012) 2.72
CD8 T cell responses to infectious pathogens. Annu Rev Immunol (2001) 2.68
Familial transmission rather than defective innate immunity shapes the distinct intestinal microbiota of TLR-deficient mice. J Exp Med (2012) 2.62
Interleukin 23 production by intestinal CD103(+)CD11b(+) dendritic cells in response to bacterial flagellin enhances mucosal innate immune defense. Immunity (2012) 2.54
Estrogen expands breast cancer stem-like cells through paracrine FGF/Tbx3 signaling. Proc Natl Acad Sci U S A (2010) 2.46
Role of the commensal microbiota in normal and pathogenic host immune responses. Cell Host Microbe (2011) 2.46
Manipulation of the quorum sensing signal AI-2 affects the antibiotic-treated gut microbiota. Cell Rep (2015) 2.38
The evolution of quorum sensing in bacterial biofilms. PLoS Biol (2008) 2.32
Additive roles for MCP-1 and MCP-3 in CCR2-mediated recruitment of inflammatory monocytes during Listeria monocytogenes infection. J Immunol (2008) 2.27
Bacterial flagellin stimulates Toll-like receptor 5-dependent defense against vancomycin-resistant Enterococcus infection. J Infect Dis (2010) 2.26
Decreased bacterial diversity characterizes the altered gut microbiota in patients with psoriatic arthritis, resembling dysbiosis in inflammatory bowel disease. Arthritis Rheumatol (2015) 2.26
Periodontal disease and the oral microbiota in new-onset rheumatoid arthritis. Arthritis Rheum (2012) 2.24
Sequential MyD88-independent and -dependent activation of innate immune responses to intracellular bacterial infection. Immunity (2003) 2.20
Innate immune activation and CD4+ T cell priming during respiratory fungal infection. Immunity (2006) 2.20
Monocytic CCR2(+) myeloid-derived suppressor cells promote immune escape by limiting activated CD8 T-cell infiltration into the tumor microenvironment. Cancer Res (2011) 2.20
IL-17 contributes to CD4-mediated graft-versus-host disease. Blood (2008) 2.07
Delayed protection by ESAT-6-specific effector CD4+ T cells after airborne M. tuberculosis infection. J Exp Med (2008) 2.02
Quantitative assessment of T cell repertoire recovery after hematopoietic stem cell transplantation. Nat Med (2013) 1.86
Adoptive transfer of T-cell precursors enhances T-cell reconstitution after allogeneic hematopoietic stem cell transplantation. Nat Med (2006) 1.85
Availability of cord blood extends allogeneic hematopoietic stem cell transplant access to racial and ethnic minorities. Biol Blood Marrow Transplant (2010) 1.83
Convergent evolution of hyperswarming leads to impaired biofilm formation in pathogenic bacteria. Cell Rep (2013) 1.82
Recombinant human interleukin-7 (CYT107) promotes T-cell recovery after allogeneic stem cell transplantation. Blood (2012) 1.81
Expression of cutaneous lymphocyte-associated antigen by CD8(+) T cells specific for a skin-tropic virus. J Clin Invest (2002) 1.79
Feedback regulation of pathogen-specific T cell priming. Immunity (2003) 1.78
Nature's TRAIL--on a path to cancer immunotherapy. Immunity (2003) 1.77
T cell-depleted unrelated donor stem cell transplantation provides favorable disease-free survival for adults with hematologic malignancies. Biol Blood Marrow Transplant (2011) 1.71
Essential role for neutrophils but not alveolar macrophages at early time points following Aspergillus fumigatus infection. J Infect Dis (2009) 1.68
Selective expansion of the monocytic lineage directed by bacterial infection. J Immunol (2009) 1.68
LPAM (alpha 4 beta 7 integrin) is an important homing integrin on alloreactive T cells in the development of intestinal graft-versus-host disease. Blood (2003) 1.67
Keratinocyte growth factor (KGF) is required for postnatal thymic regeneration. Blood (2005) 1.65
Allogeneic haematopoietic stem cell transplantation: individualized stem cell and immune therapy of cancer. Nat Rev Cancer (2010) 1.62
Ly6G+ neutrophils are dispensable for defense against systemic Listeria monocytogenes infection. J Immunol (2011) 1.61
Interleukin-22: immunobiology and pathology. Annu Rev Immunol (2015) 1.60
Gut microbial community structure and complications after kidney transplantation: a pilot study. Transplantation (2014) 1.60
IL-7 enhances peripheral T cell reconstitution after allogeneic hematopoietic stem cell transplantation. J Clin Invest (2003) 1.56
A gamma interferon independent mechanism of CD4 T cell mediated control of M. tuberculosis infection in vivo. PLoS Pathog (2011) 1.56
Toll-like receptor 5 stimulation protects mice from acute Clostridium difficile colitis. Infect Immun (2011) 1.53
Direct evidence for new T-cell generation by patients after either T-cell-depleted or unmodified allogeneic hematopoietic stem cell transplantations. Blood (2002) 1.53
Absence of beta7 integrin results in less graft-versus-host disease because of decreased homing of alloreactive T cells to intestine. Blood (2005) 1.51
Overexpression of IL-15 in vivo increases antigen-driven memory CD8+ T cells following a microbe exposure. J Immunol (2002) 1.51
Reduced late mortality risk contributes to similar survival after double-unit cord blood transplantation compared with related and unrelated donor hematopoietic stem cell transplantation. Biol Blood Marrow Transplant (2011) 1.50
Autoinducer 2 production by Streptococcus gordonii DL1 and the biofilm phenotype of a luxS mutant are influenced by nutritional conditions. J Bacteriol (2003) 1.48
Donor T cell-derived TNF is required for graft-versus-host disease and graft-versus-tumor activity after bone marrow transplantation. Blood (2002) 1.47
T cell responses to Listeria monocytogenes. Curr Opin Microbiol (2004) 1.47
Defective control of latent Epstein-Barr virus infection in systemic lupus erythematosus. J Immunol (2004) 1.45
Critical role for MyD88-mediated neutrophil recruitment during Clostridium difficile colitis. Infect Immun (2012) 1.43
CCR2 is required for CD8-induced graft-versus-host disease. Blood (2005) 1.43
Coordinate regulation of tissue macrophage and dendritic cell population dynamics by CSF-1. J Exp Med (2011) 1.43