Published in Genet Sel Evol on February 13, 2013
A new approach for efficient genotype imputation using information from relatives. BMC Genomics (2014) 1.59
Classic selective sweeps revealed by massive sequencing in cattle. PLoS Genet (2014) 1.33
Assessment of the genomic variation in a cattle population by re-sequencing of key animals at low to medium coverage. BMC Genomics (2013) 1.19
A powerful tool for genome analysis in maize: development and evaluation of the high density 600 k SNP genotyping array. BMC Genomics (2014) 1.12
Genomic analysis of dominance effects on milk production and conformation traits in Fleckvieh cattle. Genet Sel Evol (2014) 1.00
SNPchiMp v.3: integrating and standardizing single nucleotide polymorphism data for livestock species. BMC Genomics (2015) 0.97
Homozygous haplotype deficiency reveals deleterious mutations compromising reproductive and rearing success in cattle. BMC Genomics (2015) 0.90
A nonsense mutation in TMEM95 encoding a nondescript transmembrane protein causes idiopathic male subfertility in cattle. PLoS Genet (2014) 0.89
Accuracy of genome-wide imputation in Braford and Hereford beef cattle. BMC Genet (2014) 0.87
A nonsense mutation in PLD4 is associated with a zinc deficiency-like syndrome in Fleckvieh cattle. BMC Genomics (2014) 0.87
Impact of whole-genome amplification on the reliability of pre-transfer cattle embryo breeding value estimates. BMC Genomics (2014) 0.84
Imputation of sequence level genotypes in the Franches-Montagnes horse breed. Genet Sel Evol (2014) 0.81
A multi-trait meta-analysis with imputed sequence variants reveals twelve QTL for mammary gland morphology in Fleckvieh cattle. Genet Sel Evol (2016) 0.81
Accuracy of genotype imputation in Nelore cattle. Genet Sel Evol (2014) 0.81
Conserved Genetic Architecture Underlying Individual Recombination Rate Variation in a Wild Population of Soay Sheep (Ovis aries). Genetics (2016) 0.81
Impact of imputation methods on the amount of genetic variation captured by a single-nucleotide polymorphism panel in soybeans. BMC Bioinformatics (2016) 0.79
Genotype imputation in the domestic dog. Mamm Genome (2016) 0.78
Application of neural networks with back-propagation to genome-enabled prediction of complex traits in Holstein-Friesian and German Fleckvieh cattle. Genet Sel Evol (2015) 0.78
Strategies for genotype imputation in composite beef cattle. BMC Genet (2015) 0.77
Imputation of non-genotyped individuals based on genotyped relatives: assessing the imputation accuracy of a real case scenario in dairy cattle. Genet Sel Evol (2014) 0.77
Assessing accuracy of imputation using different SNP panel densities in a multi-breed sheep population. Genet Sel Evol (2016) 0.77
Accuracy of imputation using the most common sires as reference population in layer chickens. BMC Genet (2015) 0.77
Comparison among three variant callers and assessment of the accuracy of imputation from SNP array data to whole-genome sequence level in chicken. BMC Genomics (2015) 0.76
Imputation of microsatellite alleles from dense SNP genotypes for parentage verification across multiple Bos taurus and Bos indicus breeds. Front Genet (2013) 0.76
Evaluation of the accuracy of imputed sequence variant genotypes and their utility for causal variant detection in cattle. Genet Sel Evol (2017) 0.75
Revealing misassembled segments in the bovine reference genome by high resolution linkage disequilibrium scan. BMC Genomics (2016) 0.75
Genotype Imputation To Improve the Cost-Efficiency of Genomic Selection in Farmed Atlantic Salmon. G3 (Bethesda) (2017) 0.75
Systematic genotyping of groups of cows to improve genomic estimated breeding values of selection candidates. Genet Sel Evol (2016) 0.75
Use of SNP genotypes to identify carriers of harmful recessive mutations in cattle populations. BMC Genomics (2016) 0.75
A strategy to improve phasing of whole-genome sequenced individuals through integration of familial information from dense genotype panels. Genet Sel Evol (2017) 0.75
Identification of key contributors in complex population structures. PLoS One (2017) 0.75
Genomic prediction with parallel computing for slaughter traits in Chinese Simmental beef cattle using high-density genotypes. PLoS One (2017) 0.75
Merlin--rapid analysis of dense genetic maps using sparse gene flow trees. Nat Genet (2001) 53.16
Prediction of total genetic value using genome-wide dense marker maps. Genetics (2001) 41.25
MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes. Genet Epidemiol (2010) 26.41
Genotype imputation. Annu Rev Genomics Hum Genet (2009) 18.64
A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals. Am J Hum Genet (2009) 17.80
Efficient methods to compute genomic predictions. J Dairy Sci (2008) 16.76
Fast and accurate genotype imputation in genome-wide association studies through pre-phasing. Nat Genet (2012) 11.29
Genotype imputation with thousands of genomes. G3 (Bethesda) (2011) 8.77
A linear complexity phasing method for thousands of genomes. Nat Methods (2011) 8.30
Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds. Science (2009) 7.64
Genotype-imputation accuracy across worldwide human populations. Am J Hum Genet (2009) 7.28
Designing genome-wide association studies: sample size, power, imputation, and the choice of genotyping chip. PLoS Genet (2009) 6.61
A whole-genome assembly of the domestic cow, Bos taurus. Genome Biol (2009) 5.93
Haplotype phasing: existing methods and new developments. Nat Rev Genet (2011) 4.66
The impact of genetic relationship information on genomic breeding values in German Holstein cattle. Genet Sel Evol (2010) 3.87
Missing data imputation and haplotype phase inference for genome-wide association studies. Hum Genet (2008) 3.65
Analyses and comparison of accuracy of different genotype imputation methods. PLoS One (2008) 3.41
Improving accuracy of genomic predictions within and between dairy cattle breeds with imputed high-density single nucleotide polymorphism panels. J Dairy Sci (2012) 3.07
Accurate prediction of genetic values for complex traits by whole-genome resequencing. Genetics (2010) 2.79
A hidden markov model combining linkage and linkage disequilibrium information for haplotype reconstruction and quantitative trait locus fine mapping. Genetics (2009) 2.37
Genomic evaluations with many more genotypes. Genet Sel Evol (2011) 2.34
Extent of linkage disequilibrium in Holstein cattle in North America. J Dairy Sci (2008) 2.24
Extent of genome-wide linkage disequilibrium in Australian Holstein-Friesian cattle based on a high-density SNP panel. BMC Genomics (2008) 2.16
The pattern of linkage disequilibrium in German Holstein cattle. Anim Genet (2010) 2.05
A combined long-range phasing and long haplotype imputation method to impute phase for SNP genotypes. Genet Sel Evol (2011) 1.97
A phasing and imputation method for pedigreed populations that results in a single-stage genomic evaluation. Genet Sel Evol (2012) 1.80
Marker imputation with low-density marker panels in Dutch Holstein cattle. J Dairy Sci (2010) 1.70
Imputation of missing genotypes from sparse to high density using long-range phasing. Genetics (2011) 1.57
Accuracy of genotype imputation in sheep breeds. Anim Genet (2011) 1.52
Effect of imputing markers from a low-density chip on the reliability of genomic breeding values in Holstein populations. J Dairy Sci (2011) 1.47
Hot topic: performance of bovine high-density genotyping platforms in Holsteins and Jerseys. J Dairy Sci (2011) 1.42
Imputation of genotypes from different single nucleotide polymorphism panels in dairy cattle. J Dairy Sci (2010) 1.38
Characteristics of linkage disequilibrium in North American Holsteins. BMC Genomics (2010) 1.29
Imputation of genotypes with low-density chips and its effect on reliability of direct genomic values in Dutch Holstein cattle. J Dairy Sci (2012) 1.28
Comparison of genomic predictions using medium-density (∼54,000) and high-density (∼777,000) single nucleotide polymorphism marker panels in Nordic Holstein and Red Dairy Cattle populations. J Dairy Sci (2012) 1.19
Accuracy of genomic predictions of residual feed intake and 250-day body weight in growing heifers using 625,000 single nucleotide polymorphism markers. J Dairy Sci (2012) 1.12
An ensemble-based approach to imputation of moderate-density genotypes for genomic selection with application to Angus cattle. Genet Res (Camb) (2012) 1.07
Short communication: genotype imputation within and across Nordic cattle breeds. J Dairy Sci (2012) 1.01
Low-pass genome-wide sequencing and variant inference using identity-by-descent in an isolated human population. Genetics (2011) 0.99
Rates of inbreeding and genetic diversity in Canadian Holstein and Jersey cattle. J Dairy Sci (2011) 0.94
Genomic position mapping discrepancies of commercial SNP chips. PLoS One (2012) 0.91
Imputation of missing single nucleotide polymorphism genotypes using a multivariate mixed model framework. J Anim Sci (2011) 0.90
Identification of QTL for UV-protective eye area pigmentation in cattle by progeny phenotyping and genome-wide association analysis. PLoS One (2012) 0.87
Effects of reduced panel, reference origin, and genetic relationship on imputation of genotypes in Hereford cattle. J Anim Sci (2012) 0.82
Pedigree analysis and inbreeding effects on calving traits in large dairy herds in Germany. J Dairy Sci (2011) 0.78
The identification of SNPs with indeterminate positions using the Equine SNP50 BeadChip. Anim Genet (2011) 0.77
Association of a lysine-232/alanine polymorphism in a bovine gene encoding acyl-CoA:diacylglycerol acyltransferase (DGAT1) with variation at a quantitative trait locus for milk fat content. Proc Natl Acad Sci U S A (2002) 2.01
Dominant-negative effects of a novel mutated Ins2 allele causes early-onset diabetes and severe beta-cell loss in Munich Ins2C95S mutant mice. Diabetes (2007) 1.64
Whole genome sequencing of a single Bos taurus animal for single nucleotide polymorphism discovery. Genome Biol (2009) 1.51
Mouse phenotyping. Methods (2010) 1.43
A major genetic component of BSE susceptibility. BMC Biol (2006) 1.37
Dissection of genetic factors modulating fetal growth in cattle indicates a substantial role of the non-SMC condensin I complex, subunit G (NCAPG) gene. Genetics (2009) 1.34
Systemic first-line phenotyping. Methods Mol Biol (2009) 1.26
Genome-wide association study identifies two major loci affecting calving ease and growth-related traits in cattle. Genetics (2010) 1.25
Assessment of the genomic variation in a cattle population by re-sequencing of key animals at low to medium coverage. BMC Genomics (2013) 1.19
A powerful tool for genome analysis in maize: development and evaluation of the high density 600 k SNP genotyping array. BMC Genomics (2014) 1.12
Genetic modification of pigs as organ donors for xenotransplantation. Mol Reprod Dev (2010) 1.11
Identification and dissection of four major QTL affecting milk fat content in the German Holstein-Friesian population. PLoS One (2012) 1.07
Novel missense mutation of uromodulin in mice causes renal dysfunction with alterations in urea handling, energy, and bone metabolism. Am J Physiol Renal Physiol (2009) 1.02
Genomic analysis of dominance effects on milk production and conformation traits in Fleckvieh cattle. Genet Sel Evol (2014) 1.00
The mutation causing the black-and-tan pigmentation phenotype of Mangalitza pigs maps to the porcine ASIP locus but does not affect its coding sequence. Mamm Genome (2006) 0.98
Combining evidence of selection with association analysis increases power to detect regions influencing complex traits in dairy cattle. BMC Genomics (2012) 0.96
DGAT1 polymorphism in Bos indicus and Bos taurus cattle breeds. J Dairy Res (2004) 0.95
Characterization of porcine endogenous retrovirus gamma pro-pol nucleotide sequences. J Virol (2002) 0.95
Evidence for multiple alleles at the DGAT1 locus better explains a quantitative trait locus with major effect on milk fat content in cattle. Genetics (2004) 0.94
A novel mutation in the maternally imprinted PEG3 domain results in a loss of MIMT1 expression and causes abortions and stillbirths in cattle (Bos taurus). PLoS One (2010) 0.93
Mutation of the Na(+)-K(+)-2Cl(-) cotransporter NKCC2 in mice is associated with severe polyuria and a urea-selective concentrating defect without hyperreninemia. Am J Physiol Renal Physiol (2010) 0.93
Type of uromodulin mutation and allelic status influence onset and severity of uromodulin-associated kidney disease in mice. Hum Mol Genet (2013) 0.93
Genotype-specific environmental impact on the variance of blood values in inbred and F1 hybrid mice. Mamm Genome (2006) 0.90
Gsdma3(I359N) is a novel ENU-induced mutant mouse line for studying the function of Gasdermin A3 in the hair follicle and epidermis. J Dermatol Sci (2012) 0.90
Evaluation of variant identification methods for whole genome sequencing data in dairy cattle. BMC Genomics (2014) 0.90
Syndrome of arachnomelia in Simmental cattle. BMC Vet Res (2008) 0.89
Identification of QTL for UV-protective eye area pigmentation in cattle by progeny phenotyping and genome-wide association analysis. PLoS One (2012) 0.87
Characterization of endogenous retroviruses in sheep. J Virol (2003) 0.86
Hypercholesterolemia in ENU-induced mouse mutants. J Lipid Res (2004) 0.86
Arachnomelia syndrome in Simmental cattle is caused by a homozygous 2-bp deletion in the molybdenum cofactor synthesis step 1 gene (MOCS1). BMC Genet (2011) 0.85
Variations in cell density in the ganglion cell layer of the retina as a function of ocular pigmentation. Eur J Neurosci (2002) 0.85
Alleles of the bovine DGAT1 variable number of tandem repeat associated with a milk fat QTL at chromosome 14 can stimulate gene expression. Physiol Genomics (2006) 0.84
In frame exon skipping in UBE3B is associated with developmental disorders and increased mortality in cattle. BMC Genomics (2014) 0.82
Dominance and parent-of-origin effects of coding and non-coding alleles at the acylCoA-diacylglycerol-acyltransferase (DGAT1) gene on milk production traits in German Holstein cows. BMC Genet (2007) 0.82
Phylogeny, recombination and expression of porcine endogenous retrovirus gamma2 nucleotide sequences. J Gen Virol (2006) 0.82
Ectopic KIT copy number variation underlies impaired migration of primordial germ cells associated with gonadal hypoplasia in cattle (Bos taurus). PLoS One (2013) 0.82
Recombination analysis of human-tropic porcine endogenous retroviruses. J Gen Virol (2003) 0.81
Genomewide scan for anal atresia in swine identifies linkage and association with a chromosome region on Sus scrofa chromosome 1. Genetics (2005) 0.80
Standardized, systemic phenotypic analysis of Umod(C93F) and Umod(A227T) mutant mice. PLoS One (2013) 0.80
Assessment of the gene content of the chromosomal regions flanking bovine DGAT1. Genomics (2004) 0.80
Genome-wide association study uncovers four QTL predisposing to supernumerary teats in cattle. Anim Genet (2012) 0.79
Haplotypes of the porcine peroxisome proliferator-activated receptor delta gene are associated with backfat thickness. BMC Genet (2009) 0.79
No amelioration of uromodulin maturation and trafficking defect by sodium 4-phenylbutyrate in vivo: studies in mouse models of uromodulin-associated kidney disease. J Biol Chem (2014) 0.78
Systemic overexpression of growth hormone (GH) in transgenic FVB/N inbred mice: an optimized model for holistic studies of molecular mechanisms underlying GH-induced kidney pathology. Transgenic Res (2007) 0.78
Standardized, systemic phenotypic analysis of Slc12a1I299F mutant mice. J Biomed Sci (2014) 0.77
Reliable classification and recombination analysis of porcine endogenous retroviruses. Virus Genes (2005) 0.76
Concise classification of the genomic porcine endogenous retroviral gamma1 load to defined lineages. Virology (2007) 0.76
Cytogenetic mapping of DGAT1, PPARA, ADIPOR1 and CREB genes in the pig. J Appl Genet (2007) 0.76
Precision of genetic parameters and breeding values estimated in marker assisted BLUP genetic evaluation. Genet Sel Evol (2009) 0.75
Molecular cloning, mapping, and functional analysis of the bovine sulfate transporter SLC26a2 gene. Gene (2003) 0.75
Reduced body growth and excessive incisor length in insertional mutants mapping to mouse Chromosome 13. Mamm Genome (2002) 0.75
Large-scale albuminuria screen for nephropathy models in chemically induced mouse mutants. Nephron Exp Nephrol (2005) 0.75
Characterization of the bovine ampkgamma1 gene. Mamm Genome (2005) 0.75
Screen for alterations of iron related parameters in N-ethyl-N-nitrosourea-treated mice identified mutant lines with increased plasma ferritin levels. Biometals (2015) 0.75