Published in Nat Struct Mol Biol on March 01, 2013
Predicting the human epigenome from DNA motifs. Nat Methods (2014) 1.88
Genome-wide incorporation dynamics reveal distinct categories of turnover for the histone variant H3.3. Genome Biol (2013) 1.77
Pioneer transcription factors in cell reprogramming. Genes Dev (2014) 1.71
Reconfiguration of nucleosome-depleted regions at distal regulatory elements accompanies DNA methylation of enhancers and insulators in cancer. Genome Res (2014) 1.63
Genomic Nucleosome Organization Reconstituted with Pure Proteins. Cell (2016) 1.46
Identification of proteins at active, stalled, and collapsed replication forks using isolation of proteins on nascent DNA (iPOND) coupled with mass spectrometry. J Biol Chem (2013) 1.43
Insights into Nucleosome Organization in Mouse Embryonic Stem Cells through Chemical Mapping. Cell (2016) 1.41
A CRISPR view of development. Genes Dev (2014) 1.41
Coregulation of transcription factor binding and nucleosome occupancy through DNA features of mammalian enhancers. Mol Cell (2014) 1.36
RNA polymerase II transcription elongation control. Chem Rev (2013) 1.27
The BET family of proteins targets moloney murine leukemia virus integration near transcription start sites. Cell Rep (2013) 1.26
Harnessing the potential of epigenetic therapy to target solid tumors. J Clin Invest (2014) 1.20
High-throughput functional testing of ENCODE segmentation predictions. Genome Res (2014) 1.17
Dissection of thousands of cell type-specific enhancers identifies dinucleotide repeat motifs as general enhancer features. Genome Res (2014) 1.13
Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell (2016) 1.13
Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome. Genome Res (2013) 1.12
The genetic and mechanistic basis for variation in gene regulation. PLoS Genet (2015) 1.10
miR-29s: a family of epi-miRNAs with therapeutic implications in hematologic malignancies. Oncotarget (2015) 1.08
Nucleosome sliding mechanisms: new twists in a looped history. Nat Struct Mol Biol (2013) 1.07
Unraveling determinants of transcription factor binding outside the core binding site. Genome Res (2015) 1.06
Chromatin accessibility: a window into the genome. Epigenetics Chromatin (2014) 1.06
Canonical nucleosome organization at promoters forms during genome activation. Genome Res (2013) 1.05
Chemical map of Schizosaccharomyces pombe reveals species-specific features in nucleosome positioning. Proc Natl Acad Sci U S A (2013) 1.04
A framework for modelling gene regulation which accommodates non-equilibrium mechanisms. BMC Biol (2014) 1.03
High-throughput engineering of a mammalian genome reveals building principles of methylation states at CG rich regions. Elife (2014) 1.03
Molecular control of activation and priming in macrophages. Nat Immunol (2015) 1.00
Single-cell epigenomics: techniques and emerging applications. Nat Rev Genet (2015) 1.00
Drosophila muller f elements maintain a distinct set of genomic properties over 40 million years of evolution. G3 (Bethesda) (2015) 1.00
A brief review of nucleosome structure. FEBS Lett (2015) 1.00
The role of epigenetics in the biology of multiple myeloma. Blood Cancer J (2014) 0.99
Genetic, epigenetic, and environmental contributions to neural tube closure. Annu Rev Genet (2014) 0.99
Clustered regulatory elements at nucleosome-depleted regions punctuate a constant nucleosomal landscape in Schizosaccharomyces pombe. BMC Genomics (2013) 0.99
Circulating tumor-derived DNA is shorter than somatic DNA in plasma. Proc Natl Acad Sci U S A (2015) 0.99
Single-cell nucleosome mapping reveals the molecular basis of gene expression heterogeneity. Proc Natl Acad Sci U S A (2014) 0.98
Dnmt1-independent CG methylation contributes to nucleosome positioning in diverse eukaryotes. Cell (2014) 0.96
Dynamic regulation of transcription factors by nucleosome remodeling. Elife (2015) 0.94
Transcriptional and epigenetic networks of helper T and innate lymphoid cells. Immunol Rev (2014) 0.93
RSC-dependent constructive and destructive interference between opposing arrays of phased nucleosomes in yeast. Genome Res (2014) 0.93
Chromatin remodelers fine-tune H3K36me-directed deacetylation of neighbor nucleosomes by Rpd3S. Mol Cell (2013) 0.92
Role of DNA sequence in chromatin remodeling and the formation of nucleosome-free regions. Genes Dev (2014) 0.92
Transcriptional control of inflammatory responses. Cold Spring Harb Perspect Biol (2014) 0.91
Sequence features and transcriptional stalling within centromere DNA promote establishment of CENP-A chromatin. PLoS Genet (2015) 0.90
The Pioneer Transcription Factor FoxA Maintains an Accessible Nucleosome Configuration at Enhancers for Tissue-Specific Gene Activation. Mol Cell (2016) 0.90
Microbiota impact on the epigenetic regulation of colorectal cancer. Trends Mol Med (2013) 0.90
Control of Chromatin Structure by Long Noncoding RNA. Trends Cell Biol (2015) 0.89
MPE-seq, a new method for the genome-wide analysis of chromatin structure. Proc Natl Acad Sci U S A (2015) 0.89
The SWI/SNF tumor suppressor complex: Regulation of promoter nucleosomes and beyond. Nucleus (2013) 0.88
Core promoters in transcription: old problem, new insights. Trends Biochem Sci (2015) 0.87
Regulation of mRNA transport, localization and translation in the nervous system of mammals (Review). Int J Mol Med (2014) 0.87
Epigenetic control of cell fate in mouse blastocysts: the role of covalent histone modifications and chromatin remodeling. Mol Reprod Dev (2013) 0.87
A hit-and-run heat shock factor governs sustained histone methylation and transcriptional stress memory. EMBO J (2015) 0.85
The interaction of MYC with the trithorax protein ASH2L promotes gene transcription by regulating H3K27 modification. Nucleic Acids Res (2014) 0.85
Genome-Wide Nucleosome Occupancy and Positioning and Their Impact on Gene Expression and Evolution in Plants. Plant Physiol (2015) 0.85
Replication-Coupled Nucleosome Assembly and Positioning by ATP-Dependent Chromatin-Remodeling Enzymes. Cell Rep (2016) 0.84
Rotational positioning of nucleosomes facilitates selective binding of p53 to response elements associated with cell cycle arrest. Nucleic Acids Res (2013) 0.84
Genome-wide profiling of nucleosome sensitivity and chromatin accessibility in Drosophila melanogaster. Nucleic Acids Res (2015) 0.84
The nucleosome landscape of Plasmodium falciparum reveals chromatin architecture and dynamics of regulatory sequences. Nucleic Acids Res (2015) 0.83
Micro- and nanoscale devices for the investigation of epigenetics and chromatin dynamics. Nat Nanotechnol (2013) 0.83
TNFα signalling primes chromatin for NF-κB binding and induces rapid and widespread nucleosome repositioning. Genome Biol (2014) 0.83
Genome-wide nucleosome positioning is orchestrated by genomic regions associated with DNase I hypersensitivity in rice. PLoS Genet (2014) 0.83
The yeast PHO5 promoter: from single locus to systems biology of a paradigm for gene regulation through chromatin. Nucleic Acids Res (2014) 0.82
Nucleosome architecture throughout the cell cycle. Sci Rep (2016) 0.82
A positioned +1 nucleosome enhances promoter-proximal pausing. Nucleic Acids Res (2015) 0.82
Nucleosome spacing generated by ISWI and CHD1 remodelers is constant regardless of nucleosome density. Mol Cell Biol (2015) 0.82
Chromatin-dependent regulation of RNA polymerases II and III activity throughout the transcription cycle. Nucleic Acids Res (2014) 0.82
Nucleosome positioning in yeasts: methods, maps, and mechanisms. Chromosoma (2014) 0.82
Multiplexing Genetic and Nucleosome Positioning Codes: A Computational Approach. PLoS One (2016) 0.82
Determinants of nucleosome positioning and their influence on plant gene expression. Genome Res (2015) 0.82
Divergence of a conserved elongation factor and transcription regulation in budding and fission yeast. Genome Res (2016) 0.82
The function of chromatin modifiers in lineage commitment and cell fate specification. FEBS J (2014) 0.81
Fuzziness and noise in nucleosomal architecture. Nucleic Acids Res (2014) 0.81
Effects of DNA supercoiling on chromatin architecture. Biophys Rev (2016) 0.81
Positive and negative design for nonconsensus protein-DNA binding affinity in the vicinity of functional binding sites. Biophys J (2013) 0.80
Mechanical properties of symmetric and asymmetric DNA A-tracts: implications for looping and nucleosome positioning. Nucleic Acids Res (2014) 0.80
DNA dynamics and single-molecule biology. Chem Rev (2014) 0.80
Genome-wide Profiling Reveals Remarkable Parallels Between Insertion Site Selection Properties of the MLV Retrovirus and the piggyBac Transposon in Primary Human CD4(+) T Cells. Mol Ther (2016) 0.80
Evidence of selection for an accessible nucleosomal array in human. BMC Genomics (2016) 0.79
DNA-guided establishment of nucleosome patterns within coding regions of a eukaryotic genome. Genome Res (2015) 0.79
Genomes of Multicellular Organisms Have Evolved to Attract Nucleosomes to Promoter Regions. Biophys J (2017) 0.79
UV-Induced DNA Damage and Mutagenesis in Chromatin. Photochem Photobiol (2016) 0.79
Significance of epigenetic landscape in cartilage regeneration from the cartilage development and pathology perspective. Stem Cells Dev (2014) 0.78
Prediction of nucleosome rotational positioning in yeast and human genomes based on sequence-dependent DNA anisotropy. BMC Bioinformatics (2014) 0.78
Distinct chromatin features characterize different classes of repeat sequences in Drosophila melanogaster. BMC Genomics (2014) 0.78
Transcriptional refractoriness is dependent on core promoter architecture. Nat Commun (2015) 0.78
Epigenetic regulation of open chromatin in pluripotent stem cells. Transl Res (2014) 0.78
In vivo mapping of arabidopsis scaffold/matrix attachment regions reveals link to nucleosome-disfavoring poly(dA:dT) tracts. Plant Cell (2014) 0.78
Chromatin targeting signals, nucleosome positioning mechanism and non-coding RNA-mediated regulation of the chromatin remodeling complex NoRC. PLoS Genet (2014) 0.78
How motif environment influences transcription factor search dynamics: Finding a needle in a haystack. Bioessays (2016) 0.77
Genome-Wide Profiling of PARP1 Reveals an Interplay with Gene Regulatory Regions and DNA Methylation. PLoS One (2015) 0.77
Applications of alignment-free methods in epigenomics. Brief Bioinform (2013) 0.77
Regulating retrotransposon activity through the use of alternative transcription start sites. EMBO Rep (2016) 0.77
Unravelling the proteomic profile of rice meiocytes during early meiosis. Front Plant Sci (2014) 0.77
Overcoming a nucleosomal barrier to replication. Sci Adv (2016) 0.77
Landscape and Dynamics of Transcription Initiation in the Malaria Parasite Plasmodium falciparum. Cell Rep (2016) 0.76
PTH Signaling and Epigenetic Control of Bone Remodeling. Curr Mol Biol Rep (2016) 0.76
X-ray structure of the MMTV-A nucleosome core. Proc Natl Acad Sci U S A (2016) 0.76
Lynch syndrome associated with two MLH1 promoter variants and allelic imbalance of MLH1 expression. Hum Mutat (2015) 0.76
A JUMONJI Protein with E3 Ligase and Histone H3 Binding Activities Affects Transposon Silencing in Arabidopsis. Plant Physiol (2016) 0.76
Histone modifications facilitate the coexpression of bidirectional promoters in rice. BMC Genomics (2016) 0.76
Functionally distinct patterns of nucleosome remodeling at enhancers in glucocorticoid-treated acute lymphoblastic leukemia. Epigenetics Chromatin (2015) 0.76
Dynamic regulation of nucleosome positioning in the human genome. Cell (2008) 15.60
A genomic code for nucleosome positioning. Nature (2006) 15.38
Genome-scale identification of nucleosome positions in S. cerevisiae. Science (2005) 15.04
The 5' ends of Drosophila heat shock genes in chromatin are hypersensitive to DNase I. Nature (1980) 14.11
Naturally occurring poly(dA-dT) sequences are upstream promoter elements for constitutive transcription in yeast. Proc Natl Acad Sci U S A (1985) 13.43
A high-resolution atlas of nucleosome occupancy in yeast. Nat Genet (2007) 12.21
The DNA-encoded nucleosome organization of a eukaryotic genome. Nature (2008) 11.41
Alteration of nucleosome structure as a mechanism of transcriptional regulation. Annu Rev Biochem (1998) 8.86
Sequence periodicities in chicken nucleosome core DNA. J Mol Biol (1986) 8.84
Nucleosome organization in the Drosophila genome. Nature (2008) 8.65
The structure of DNA in the nucleosome core. Nature (2003) 7.94
A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome. Genome Res (2008) 7.89
A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning. Genome Res (2008) 7.77
The structure of an oligo(dA).oligo(dT) tract and its biological implications. Nature (1987) 7.23
DNA bending and its relation to nucleosome positioning. J Mol Biol (1985) 6.18
Histone H1 depletion in mammals alters global chromatin structure but causes specific changes in gene regulation. Cell (2005) 6.17
Intrinsic histone-DNA interactions and low nucleosome density are important for preferential accessibility of promoter regions in yeast. Mol Cell (2005) 6.17
Chromatin remodelling at promoters suppresses antisense transcription. Nature (2007) 6.11
Pioneer transcription factors: establishing competence for gene expression. Genes Dev (2011) 6.01
Dynamic remodeling of individual nucleosomes across a eukaryotic genome in response to transcriptional perturbation. PLoS Biol (2008) 5.88
Poly(dA:dT), a ubiquitous promoter element that stimulates transcription via its intrinsic DNA structure. EMBO J (1995) 5.74
Distinct modes of regulation by chromatin encoded through nucleosome positioning signals. PLoS Comput Biol (2008) 5.71
Determinants of nucleosome organization in primary human cells. Nature (2011) 5.50
ACF, an ISWI-containing and ATP-utilizing chromatin assembly and remodeling factor. Cell (1997) 5.22
Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo. Nat Struct Mol Biol (2009) 4.64
A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Mol Cell (2008) 4.49
Promoter-proximal pausing of RNA polymerase II: emerging roles in metazoans. Nat Rev Genet (2012) 4.37
Two strategies for gene regulation by promoter nucleosomes. Genome Res (2008) 4.19
Mechanisms that specify promoter nucleosome location and identity. Cell (2009) 4.14
A stretch of "late" SV40 viral DNA about 400 bp long which includes the origin of replication is specifically exposed in SV40 minichromosomes. Cell (1979) 3.96
Sequence motifs and free energies of selected natural and non-natural nucleosome positioning DNA sequences. J Mol Biol (1999) 3.72
Genome-wide structure and organization of eukaryotic pre-initiation complexes. Nature (2012) 3.58
Poly(dA:dT) tracts: major determinants of nucleosome organization. Curr Opin Struct Biol (2009) 3.43
Distinguishing between mechanisms of eukaryotic transcriptional activation with bacteriophage T7 RNA polymerase. Cell (1987) 3.26
Chromatin decouples promoter threshold from dynamic range. Nature (2008) 3.24
A packing mechanism for nucleosome organization reconstituted across a eukaryotic genome. Science (2011) 2.95
A functional evolutionary approach to identify determinants of nucleosome positioning: a unifying model for establishing the genome-wide pattern. Mol Cell (2012) 2.86
Whole-genome comparison of Leu3 binding in vitro and in vivo reveals the importance of nucleosome occupancy in target site selection. Genome Res (2006) 2.63
The role of nucleosome positioning in the evolution of gene regulation. PLoS Biol (2010) 2.53
A role for Snf2-related nucleosome-spacing enzymes in genome-wide nucleosome organization. Science (2011) 2.50
Antagonistic forces that position nucleosomes in vivo. Nat Struct Mol Biol (2006) 2.41
Schizosaccharomyces pombe genome-wide nucleosome mapping reveals positioning mechanisms distinct from those of Saccharomyces cerevisiae. Nat Struct Mol Biol (2010) 2.40
A map of nucleosome positions in yeast at base-pair resolution. Nature (2012) 2.30
Substantial histone reduction modulates genomewide nucleosomal occupancy and global transcriptional output. PLoS Biol (2011) 2.26
Gene expression divergence in yeast is coupled to evolution of DNA-encoded nucleosome organization. Nat Genet (2009) 2.22
Genome-wide nucleosome specificity and directionality of chromatin remodelers. Cell (2012) 2.22
Controls of nucleosome positioning in the human genome. PLoS Genet (2012) 2.14
The crystal structure of d(G-G-G-G-C-C-C-C). A model for poly(dG).poly(dC). J Mol Biol (1985) 2.03
A RSC/nucleosome complex determines chromatin architecture and facilitates activator binding. Cell (2010) 2.00
Poly(dA.dT) sequences exist as rigid DNA structures in nucleosome-free yeast promoters in vivo. Nucleic Acids Res (2000) 1.96
Manipulating nucleosome disfavoring sequences allows fine-tune regulation of gene expression in yeast. Nat Genet (2012) 1.89
DNA sequence- and conformation-directed positioning of nucleosomes by chromatin-remodeling complexes. Proc Natl Acad Sci U S A (2007) 1.53
Distinct frequency-distributions of homopolymeric DNA tracts in different genomes. Nucleic Acids Res (1998) 1.48
A specialized nucleosome modulates transcription factor access to a C. glabrata metal responsive promoter. Cell (1996) 1.38
Evolutionary divergence of intrinsic and trans-regulated nucleosome positioning sequences reveals plastic rules for chromatin organization. Genome Res (2011) 1.37
Nucleosome depletion at yeast terminators is not intrinsic and can occur by a transcriptional mechanism linked to 3'-end formation. Proc Natl Acad Sci U S A (2010) 1.37
Specific distribution of the Saccharomyces cerevisiae linker histone homolog HHO1p in the chromatin. Nucleic Acids Res (2001) 1.28
In vivo effects of histone H3 depletion on nucleosome occupancy and position in Saccharomyces cerevisiae. PLoS Genet (2012) 1.28
CHD1 remodelers regulate nucleosome spacing in vitro and align nucleosomal arrays over gene coding regions in S. pombe. EMBO J (2012) 1.25
A novel strategy of transcription regulation by intragenic nucleosome ordering. Genome Res (2009) 1.21
Compensation for differences in gene copy number among yeast ribosomal proteins is encoded within their promoters. Genome Res (2011) 1.19
Chd1 chromatin remodelers maintain nucleosome organization and repress cryptic transcription. EMBO Rep (2012) 1.19
Hrp3 controls nucleosome positioning to suppress non-coding transcription in eu- and heterochromatin. EMBO J (2012) 1.10
The RSC chromatin remodelling enzyme has a unique role in directing the accurate positioning of nucleosomes. EMBO J (2011) 1.09
Multiple aspects of ATP-dependent nucleosome translocation by RSC and Mi-2 are directed by the underlying DNA sequence. PLoS One (2009) 1.04
Histone H1 null vertebrate cells exhibit altered nucleosome architecture. Nucleic Acids Res (2010) 0.98
Unusual combinatorial involvement of poly-A/T tracts in organizing genes and chromatin in Dictyostelium. Genome Res (2012) 0.96
Reconstitution of short-spaced chromatin from the histone octamer and either HMG-14,17 or histone H1. J Mol Biol (1993) 0.87
Linker histone subtypes differ in their effect on nucleosomal spacing in vivo. J Mol Biol (2012) 0.82
Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs. Cell (2007) 30.22
A gene-coexpression network for global discovery of conserved genetic modules. Science (2003) 18.75
The role of site accessibility in microRNA target recognition. Nat Genet (2007) 18.52
Long noncoding RNA as modular scaffold of histone modification complexes. Science (2010) 15.23
The DNA-encoded nucleosome organization of a eukaryotic genome. Nature (2008) 11.41
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project. Science (2010) 9.78
Module map of stem cell genes guides creation of epithelial cancer stem cells. Cell Stem Cell (2008) 7.69
Distinct modes of regulation by chromatin encoded through nucleosome positioning signals. PLoS Comput Biol (2008) 5.71
Evidence for an instructive mechanism of de novo methylation in cancer cells. Nat Genet (2006) 4.97
A module of negative feedback regulators defines growth factor signaling. Nat Genet (2007) 4.35
A transcriptional profile of aging in the human kidney. PLoS Biol (2004) 3.69
Motif module map reveals enforcement of aging by continual NF-kappaB activity. Genes Dev (2007) 3.16
Monoubiquitinated H2B is associated with the transcribed region of highly expressed genes in human cells. Nat Cell Biol (2008) 3.08
Sfp1 is a stress- and nutrient-sensitive regulator of ribosomal protein gene expression. Proc Natl Acad Sci U S A (2004) 2.99
Genome-wide measurement of RNA folding energies. Mol Cell (2012) 2.85
Accuracy of transpulmonary thermodilution versus gravimetric measurement of extravascular lung water. Crit Care Med (2004) 2.68
Genomics: ENCODE explained. Nature (2012) 2.62
Inferring gene regulatory logic from high-throughput measurements of thousands of systematically designed promoters. Nat Biotechnol (2012) 2.49
Understanding the transcriptome through RNA structure. Nat Rev Genet (2011) 2.46
High nucleosome occupancy is encoded at human regulatory sequences. PLoS One (2010) 2.43
Transient transcriptional responses to stress are generated by opposing effects of mRNA production and degradation. Mol Syst Biol (2008) 2.27
Gene expression divergence in yeast is coupled to evolution of DNA-encoded nucleosome organization. Nat Genet (2009) 2.22
EGF decreases the abundance of microRNAs that restrain oncogenic transcription factors. Sci Signal (2010) 2.16
A feature-based approach to modeling protein-DNA interactions. PLoS Comput Biol (2008) 2.12
Overlapping codes within protein-coding sequences. Genome Res (2010) 2.02
Manipulating nucleosome disfavoring sequences allows fine-tune regulation of gene expression in yeast. Nat Genet (2012) 1.89
Systematic functional characterization of cis-regulatory motifs in human core promoters. Genome Res (2008) 1.83
Proteome-wide prediction of acetylation substrates. Proc Natl Acad Sci U S A (2009) 1.81
Incorporating nucleosomes into thermodynamic models of transcription regulation. Genome Res (2009) 1.72
Nucleosome sequence preferences influence in vivo nucleosome organization. Nat Struct Mol Biol (2010) 1.72
Computational prediction of RNA structural motifs involved in posttranscriptional regulatory processes. Proc Natl Acad Sci U S A (2008) 1.51
Reconstruction of cell lineage trees in mice. PLoS One (2008) 1.46
Reversal of aging by NFkappaB blockade. Cell Cycle (2007) 1.36
Preferentially quantized linker DNA lengths in Saccharomyces cerevisiae. PLoS Comput Biol (2008) 1.34
Disruption of yeast forkhead-associated cell cycle transcription by oxidative stress. Mol Biol Cell (2004) 1.32
New insights into replication origin characteristics in metazoans. Cell Cycle (2012) 1.29
Revealing targeted therapy for human cancer by gene module maps. Cancer Res (2008) 1.29
Promoter sequence determines the relationship between expression level and noise. PLoS Biol (2013) 1.28
Promoters maintain their relative activity levels under different growth conditions. Mol Syst Biol (2013) 1.26
Contribution of histone sequence preferences to nucleosome organization: proposed definitions and methodology. Genome Biol (2010) 1.25
Minimally cultured or selected autologous tumor-infiltrating lymphocytes after a lympho-depleting chemotherapy regimen in metastatic melanoma patients. J Immunother (2009) 1.25
A transcriptional program mediating entry into cellular quiescence. PLoS Genet (2007) 1.23
Compensation for differences in gene copy number among yeast ribosomal proteins is encoded within their promoters. Genome Res (2011) 1.19
p53 binds preferentially to genomic regions with high DNA-encoded nucleosome occupancy. Genome Res (2010) 1.19
Deciphering the rules by which 5'-UTR sequences affect protein expression in yeast. Proc Natl Acad Sci U S A (2013) 1.18
InSite: a computational method for identifying protein-protein interaction binding sites on a proteome-wide scale. Genome Biol (2007) 1.18
Perianesthetic dental injuries: analysis of incident reports. J Clin Anesth (2004) 1.17
High nucleosome occupancy is encoded at X-linked gene promoters in C. elegans. Genome Res (2010) 1.15
Cell lineage analysis of the mammalian female germline. PLoS Genet (2012) 1.13
Two DNA-encoded strategies for increasing expression with opposing effects on promoter dynamics and transcriptional noise. Genome Res (2013) 1.08
Widespread compensatory evolution conserves DNA-encoded nucleosome organization in yeast. PLoS Comput Biol (2010) 1.07
Estimating cell depth from somatic mutations. PLoS Comput Biol (2008) 1.06
Stemness, cancer and cancer stem cells. Cell Cycle (2008) 1.02
Sequence features of yeast and human core promoters that are predictive of maximal promoter activity. Nucleic Acids Res (2013) 1.00
The grammar of transcriptional regulation. Hum Genet (2014) 0.95
Predicting disease risk using bootstrap ranking and classification algorithms. PLoS Comput Biol (2013) 0.94
Modeling interactions between adjacent nucleosomes improves genome-wide predictions of nucleosome occupancy. Bioinformatics (2009) 0.94
Possible role of recombinant activated factor VII (rFVIIa) in the control of hemorrhage associated with massive trauma. Can J Anaesth (2002) 0.93
Probabilistic discovery of overlapping cellular processes and their regulation. J Comput Biol (2005) 0.90
Outcome of patients with cystic fibrosis admitted to the intensive care unit: is invasive mechanical ventilation a risk factor for death in patients waiting lung transplantation? Heart Lung (2009) 0.90
Measurements of the impact of 3' end sequences on gene expression reveal wide range and sequence dependent effects. PLoS Comput Biol (2013) 0.90
A day in the life of the meta-organism: diurnal rhythms of the intestinal microbiome and its host. Gut Microbes (2015) 0.88
Using expression profiles of Caenorhabditis elegans neurons to identify genes that mediate synaptic connectivity. PLoS Comput Biol (2008) 0.88
Robust prediction of expression differences among human individuals using only genotype information. PLoS Genet (2013) 0.86
Geometric constraints on neuronal connectivity facilitate a concise synaptic adhesive code. Proc Natl Acad Sci U S A (2008) 0.83
Nucleosome maps of the human cytomegalovirus genome reveal a temporal switch in chromatin organization linked to a major IE protein. Proc Natl Acad Sci U S A (2013) 0.83
Reuse of concentrated animal feeding operation wastewater on agricultural lands. J Environ Qual (2008) 0.83
Outcome of patients having dermatomyositis admitted to the intensive care unit. Clin Rheumatol (2007) 0.80
Management of sepsis. N Engl J Med (2007) 0.80
Assessing fluid-responsiveness by a standardized ventilatory maneuver: the respiratory systolic variation test. Anesth Analg (2005) 0.80
ST-segment deviation following implantable cardioverter defibrillator shocks: incidence, timing, and clinical significance. Pacing Clin Electrophysiol (2002) 0.80
Corrigendum: Unraveling determinants of transcription factor binding outside the core binding site. Genome Res (2015) 0.80
Joint learning from multiple types of genomic data. Pac Symp Biocomput (2005) 0.80
Mitochondrial function and tissue vitality: bench-to-bedside real-time optical monitoring system. J Biomed Opt (2011) 0.79
Computational prediction of RNA structural motifs involved in post-transcriptional regulatory processes. Methods Mol Biol (2011) 0.78
Non-caloric artificial sweeteners and the microbiome: findings and challenges. Gut Microbes (2015) 0.78
How transcription factors identify regulatory sites in genomic sequence. Subcell Biochem (2011) 0.78
Early administration of extracorporeal life support for near fatal asthma. Isr Med Assoc J (2003) 0.77
Evaluation of the impact of a quality improvement program and intensivist-directed ICU team on mortality after cardiac surgery. J Cardiothorac Vasc Anesth (2013) 0.77
Inferring gene expression from ribosomal promoter sequences, a crowdsourcing approach. Genome Res (2013) 0.77
Fate of indicator microorganisms under nutrient management plan conditions. J Environ Qual (2009) 0.76
Fixated on fixation: using ChIP to interrogate the dynamics of chromatin interactions. Genome Biol (2013) 0.75
[Pediatric anesthesia emergence delirium after elective ambulatory surgery: etiology, risk factors and prevalence]. Harefuah (2015) 0.75
[Nutrition in the critically ill patient]. Harefuah (2007) 0.75
[Airway management in the morbidly obese patient]. Harefuah (2015) 0.75
Corrigendum: Large-scale mapping of gene regulatory logic reveals context-dependent repression by transcriptional activators. Genome Res (2017) 0.75
[Prevention of procedural pain in pediatric hematology-oncology]. Harefuah (2005) 0.75
[Preoperative laboratory screening in healthy children: what is necessary?]. Harefuah (2003) 0.75
[Acute subdural hematoma following spine surgery]. Harefuah (2015) 0.75
[The computerized patient record as a tool to improve monitoring and prevention of hospital acquired infections]. Harefuah (2015) 0.75