Published in Plant Cell on March 22, 2013
Sugar demand, not auxin, is the initial regulator of apical dominance. Proc Natl Acad Sci U S A (2014) 1.41
Repression of Jasmonate-Dependent Defenses by Shade Involves Differential Regulation of Protein Stability of MYC Transcription Factors and Their JAZ Repressors in Arabidopsis. Plant Cell (2014) 1.26
Strigolactone Signaling in Arabidopsis Regulates Shoot Development by Targeting D53-Like SMXL Repressor Proteins for Ubiquitination and Degradation. Plant Cell (2015) 1.22
Grain number, plant height, and heading date7 is a central regulator of growth, development, and stress response. Plant Physiol (2014) 1.17
Multiple pathways regulate shoot branching. Front Plant Sci (2015) 1.12
Strigolactone promotes degradation of DWARF14, an α/β hydrolase essential for strigolactone signaling in Arabidopsis. Plant Cell (2014) 1.09
Abscisic acid regulates axillary bud outgrowth responses to the ratio of red to far-red light. Plant Physiol (2013) 1.07
Strigolactones stimulate internode elongation independently of gibberellins. Plant Physiol (2013) 0.96
ABA receptor PYL9 promotes drought resistance and leaf senescence. Proc Natl Acad Sci U S A (2016) 0.93
Shaping plant architecture. Front Plant Sci (2015) 0.89
Phytochrome B promotes branching in Arabidopsis by suppressing auxin signaling. Plant Physiol (2014) 0.85
Abscisic Acid Is a General Negative Regulator of Arabidopsis Axillary Bud Growth. Plant Physiol (2015) 0.82
Cytokinins Are Initial Targets of Light in the Control of Bud Outgrowth. Plant Physiol (2016) 0.80
The interaction between nitrogen availability and auxin, cytokinin, and strigolactone in the control of shoot branching in rice (Oryza sativa L.). Plant Cell Rep (2015) 0.80
Conditional Auxin Response and Differential Cytokinin Profiles in Shoot Branching Mutants. Plant Physiol (2014) 0.80
Environmental control of branching in petunia. Plant Physiol (2015) 0.80
Genome-Wide Association Mapping and Genomic Prediction Elucidate the Genetic Architecture of Morphological Traits in Arabidopsis. Plant Physiol (2016) 0.79
Phloem Transport of the Receptor DWARF14 Protein Is Required for Full Function of Strigolactones. Plant Physiol (2016) 0.79
Tillering in the sugary1 sweet corn is maintained by overriding the teosinte branched1 repressive signal. Plant Signal Behav (2015) 0.77
Identification of gene functions associated to active and dormant buds in Arabidopsis. Plant Signal Behav (2014) 0.77
TCP Transcription Factors at the Interface between Environmental Challenges and the Plant's Growth Responses. Front Plant Sci (2016) 0.77
Transcriptome Profiling of Tiller Buds Provides New Insights into PhyB Regulation of Tillering and Indeterminate Growth in Sorghum. Plant Physiol (2016) 0.76
Sustainable harvest: managing plasticity for resilient crops. Plant Biotechnol J (2014) 0.76
Light Signaling in Bud Outgrowth and Branching in Plants. Plants (Basel) (2014) 0.76
The timing of low R:FR exposure profoundly affects Arabidopsis branching responses. Plant Signal Behav (2014) 0.75
Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc Natl Acad Sci U S A (2016) 0.75
Plant Responses to Vegetation Proximity: A Whole Life Avoiding Shade. Front Plant Sci (2016) 0.75
Impact of RAV1-engineering on poplar biomass production: a short-rotation coppice field trial. Biotechnol Biofuels (2017) 0.75
A Conserved Carbon Starvation Response Underlies Bud Dormancy in Woody and Herbaceous Species. Front Plant Sci (2017) 0.75
Hormonal Regulation in Shade Avoidance. Front Plant Sci (2017) 0.75
Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res (2003) 103.76
Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol (2004) 101.91
Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J (1998) 97.93
WebLogo: a sequence logo generator. Genome Res (2004) 59.58
FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes. Bioinformatics (2004) 26.64
Locating proteins in the cell using TargetP, SignalP and related tools. Nat Protoc (2007) 19.50
GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox. Plant Physiol (2004) 19.29
Normalization of cDNA microarray data. Methods (2003) 18.69
qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data. Genome Biol (2007) 16.15
MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. Plant J (2004) 15.51
Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiol (2005) 15.10
A gateway cloning vector set for high-throughput functional analysis of genes in planta. Plant Physiol (2003) 13.32
WoLF PSORT: protein localization predictor. Nucleic Acids Res (2007) 10.14
The evolution of apical dominance in maize. Nature (1997) 9.37
Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies. J Mol Biol (1998) 8.34
Direct targeting of light signals to a promoter element-bound transcription factor. Science (2000) 5.73
The Arabidopsis basic/helix-loop-helix transcription factor family. Plant Cell (2003) 5.68
Rapid synthesis of auxin via a new tryptophan-dependent pathway is required for shade avoidance in plants. Cell (2008) 5.55
Different plant hormones regulate similar processes through largely nonoverlapping transcriptional responses. Cell (2006) 4.87
Phytochrome photosensory signalling networks. Nat Rev Mol Cell Biol (2002) 4.67
A functional genomics approach reveals CHE as a component of the Arabidopsis circadian clock. Science (2009) 4.49
LHY and CCA1 are partially redundant genes required to maintain circadian rhythms in Arabidopsis. Dev Cell (2002) 4.13
ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis. Nucleic Acids Res (2006) 3.74
MAX1 and MAX2 control shoot lateral branching in Arabidopsis. Development (2002) 3.57
ABA is an essential signal for plant resistance to pathogens affecting JA biosynthesis and the activation of defenses in Arabidopsis. Plant Cell (2007) 3.18
The G-box: a ubiquitous regulatory DNA element in plants bound by the GBF family of bZIP proteins. Trends Biochem Sci (1995) 2.93
Keeping up with the neighbours: phytochrome sensing and other signalling mechanisms. Trends Plant Sci (1999) 2.91
The main auxin biosynthesis pathway in Arabidopsis. Proc Natl Acad Sci U S A (2011) 2.87
Phytochromes and shade-avoidance responses in plants. Ann Bot (2005) 2.77
ICK1, a cyclin-dependent protein kinase inhibitor from Arabidopsis thaliana interacts with both Cdc2a and CycD3, and its expression is induced by abscisic acid. Plant J (1998) 2.71
DNA binding and dimerization specificity and potential targets for the TCP protein family. Plant J (2002) 2.51
Arabidopsis BRANCHED1 acts as an integrator of branching signals within axillary buds. Plant Cell (2007) 2.49
Auxin regulation of cytokinin biosynthesis in Arabidopsis thaliana: a factor of potential importance for auxin-cytokinin-regulated development. Proc Natl Acad Sci U S A (2004) 2.48
Gating of the rapid shade-avoidance response by the circadian clock in plants. Nature (2003) 2.46
Arabidopsis TCP20 links regulation of growth and cell division control pathways. Proc Natl Acad Sci U S A (2005) 2.40
Signal integration in the control of shoot branching. Nat Rev Mol Cell Biol (2011) 2.29
PCF1 and PCF2 specifically bind to cis elements in the rice proliferating cell nuclear antigen gene. Plant Cell (1997) 2.23
Initiation of axillary and floral meristems in Arabidopsis. Dev Biol (2000) 2.18
Phytochrome B and at Least One Other Phytochrome Mediate the Accelerated Flowering Response of Arabidopsis thaliana L. to Low Red/Far-Red Ratio. Plant Physiol (1994) 2.17
The Arabidopsis Athb-2 and -4 genes are strongly induced by far-red-rich light. Plant J (1993) 2.12
A dynamic balance between gene activation and repression regulates the shade avoidance response in Arabidopsis. Genes Dev (2005) 2.08
A molecular timetable for apical bud formation and dormancy induction in poplar. Plant Cell (2007) 2.08
Towards an understanding of photosynthetic acclimation. J Exp Bot (2005) 2.02
Internal telomeric repeats and 'TCP domain' protein-binding sites co-operate to regulate gene expression in Arabidopsis thaliana cycling cells. Plant J (2003) 1.99
Control of bud activation by an auxin transport switch. Proc Natl Acad Sci U S A (2009) 1.97
A genomic analysis of the shade avoidance response in Arabidopsis. Plant Physiol (2003) 1.91
Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling. Plant J (2012) 1.84
Two different novel cis-acting elements of erd1, a clpA homologous Arabidopsis gene function in induction by dehydration stress and dark-induced senescence. Plant J (2003) 1.81
The hormonal regulation of axillary bud growth in Arabidopsis. Plant J (2000) 1.75
Arabidopsis PYR/PYL/RCAR receptors play a major role in quantitative regulation of stomatal aperture and transcriptional response to abscisic acid. Plant Cell (2012) 1.67
The 'ORC cycle': a novel pathway for regulating eukaryotic DNA replication. Gene (2003) 1.65
A Link between circadian-controlled bHLH factors and the APRR1/TOC1 quintet in Arabidopsis thaliana. Plant Cell Physiol (2003) 1.63
New genes in the strigolactone-related shoot branching pathway. Curr Opin Plant Biol (2009) 1.62
Identification of cis-elements that regulate gene expression during initiation of axillary bud outgrowth in Arabidopsis. Plant Physiol (2005) 1.61
Interaction of shade avoidance and auxin responses: a role for two novel atypical bHLH proteins. EMBO J (2007) 1.59
TCP transcription factors link the regulation of genes encoding mitochondrial proteins with the circadian clock in Arabidopsis thaliana. Plant Cell (2010) 1.47
Phytochrome signaling mechanisms. Arabidopsis Book (2011) 1.47
Phytochrome B represses Teosinte Branched1 expression and induces sorghum axillary bud outgrowth in response to light signals. Plant Physiol (2006) 1.46
Arabidopsis Teosinte Branched1-like 1 regulates axillary bud outgrowth and is homologous to monocot Teosinte Branched1. Plant Cell Physiol (2007) 1.43
Control of outgrowth and dormancy in axillary buds. Plant Physiol (2001) 1.43
The pea TCP transcription factor PsBRC1 acts downstream of Strigolactones to control shoot branching. Plant Physiol (2011) 1.38
Antagonistic action of strigolactone and cytokinin in bud outgrowth control. Plant Physiol (2011) 1.36
Axillary meristem development in Arabidopsis thaliana. Plant J (2000) 1.34
Dormancy-associated gene expression in pea axillary buds. Cloning and expression of PsDRM1 and PsDRM2. Planta (1998) 1.33
Feedback-regulation of strigolactone biosynthetic genes and strigolactone-regulated genes in Arabidopsis. Biosci Biotechnol Biochem (2009) 1.31
Transcriptomics of shading-induced and NAA-induced abscission in apple (Malus domestica) reveals a shared pathway involving reduced photosynthesis, alterations in carbohydrate transport and signaling and hormone crosstalk. BMC Plant Biol (2011) 1.28
Molecular interactions between light and hormone signaling to control plant growth. Plant Mol Biol (2008) 1.28
Auxin, cytokinin and the control of shoot branching. Ann Bot (2011) 1.28
Shade avoidance. Arabidopsis Book (2012) 1.26
Maintenance of shoot growth by endogenous ABA: genetic assessment of the involvement of ethylene suppression. J Exp Bot (2003) 1.25
The phytohormone signal network regulating elongation growth during shade avoidance. J Exp Bot (2010) 1.23
Phytochrome regulation of branching in Arabidopsis. Plant Physiol (2010) 1.20
Combinatorial interaction of light-responsive elements plays a critical role in determining the response characteristics of light-regulated promoters in Arabidopsis. Plant J (1998) 1.19
Suppression of sorghum axillary bud outgrowth by shade, phyB and defoliation signalling pathways. Plant Cell Environ (2009) 1.16
Expression of a ribosomal protein gene in axillary buds of pea seedlings. Plant Physiol (1992) 1.13
Cell cycle regulation during growth-dormancy cycles in pea axillary buds. Plant Mol Biol (1995) 1.13
Inhibition of tiller bud outgrowth in the tin mutant of wheat is associated with precocious internode development. Plant Physiol (2012) 1.09
Changes after Decapitation in Concentrations of Indole-3-Acetic Acid and Abscisic Acid in the Larger Axillary Bud of Phaseolus vulgaris L. cv Tender Green. Plant Physiol (1991) 1.07
The Arabidopsis transcription factor AtTCP15 regulates endoreduplication by modulating expression of key cell-cycle genes. Mol Plant (2011) 1.04
Low red/far-red ratios reduce Arabidopsis resistance to Botrytis cinerea and jasmonate responses via a COI1-JAZ10-dependent, salicylic acid-independent mechanism. Plant Physiol (2012) 1.01
Analysis of cycles of dormancy and growth in pea axillary buds based on mRNA accumulation patterns of cell cycle-related genes. Plant Cell Physiol (1998) 1.01
ABAP1 is a novel plant Armadillo BTB protein involved in DNA replication and transcription. EMBO J (2008) 0.99
Role of tomato BRANCHED1-like genes in the control of shoot branching. Plant J (2011) 0.96
Diurnal dependence of growth responses to shade in Arabidopsis: role of hormone, clock, and light signaling. Mol Plant (2012) 0.87
The TCP4 transcription factor of Arabidopsis blocks cell division in yeast at G1→S transition. Biochem Biophys Res Commun (2011) 0.87
Photosynthetic acclimation to light gradients in plant stands comes out of shade. Plant Signal Behav (2008) 0.84
Stand density effects on branching in an annual legume (Senna obtusifolia). Ann Bot (1994) 0.77
Control of jasmonate biosynthesis and senescence by miR319 targets. PLoS Biol (2008) 3.09
TCP genes: a family snapshot ten years later. Trends Plant Sci (2009) 2.54
Arabidopsis BRANCHED1 acts as an integrator of branching signals within axillary buds. Plant Cell (2007) 2.49
Regulatory genes control a key morphological and ecological trait transferred between species. Science (2008) 1.98
Large T antigen on the simian virus 40 origin of replication: a 3D snapshot prior to DNA replication. EMBO J (2003) 1.30
Immunogenic profiling in mice of a HIV/AIDS vaccine candidate (MVA-B) expressing four HIV-1 antigens and potentiation by specific gene deletions. PLoS One (2010) 1.20
Floral meristem identity genes are expressed during tendril development in grapevine. Plant Physiol (2004) 1.14
A candidate HIV/AIDS vaccine (MVA-B) lacking vaccinia virus gene C6L enhances memory HIV-1-specific T-cell responses. PLoS One (2011) 1.10
VFL, the grapevine FLORICAULA/LEAFY ortholog, is expressed in meristematic regions independently of their fate. Plant Physiol (2002) 1.09
Strigolactone promotes degradation of DWARF14, an α/β hydrolase essential for strigolactone signaling in Arabidopsis. Plant Cell (2014) 1.09
The HIV/AIDS vaccine candidate MVA-B administered as a single immunogen in humans triggers robust, polyfunctional, and selective effector memory T cell responses to HIV-1 antigens. J Virol (2011) 1.06
Chromatin remodeling in plant development. Int J Dev Biol (2009) 1.01
Removal of vaccinia virus genes that block interferon type I and II pathways improves adaptive and memory responses of the HIV/AIDS vaccine candidate NYVAC-C in mice. J Virol (2012) 0.98
AtREM1, a member of a new family of B3 domain-containing genes, is preferentially expressed in reproductive meristems. Plant Physiol (2002) 0.97
Deletion of the viral anti-apoptotic gene F1L in the HIV/AIDS vaccine candidate MVA-C enhances immune responses against HIV-1 antigens. PLoS One (2012) 0.96
Role of tomato BRANCHED1-like genes in the control of shoot branching. Plant J (2011) 0.96
The Erwinia chrysanthemi phoP-phoQ operon plays an important role in growth at low pH, virulence and bacterial survival in plant tissue. Mol Microbiol (2003) 0.94
A human multi-epitope recombinant vaccinia virus as a universal T cell vaccine candidate against influenza virus. PLoS One (2011) 0.91
On the development of three new tools for organizing and sharing information in three-dimensional electron microscopy. Acta Crystallogr D Biol Crystallogr (2013) 0.90
Reduce, reuse, and recycle: developmental evolution of trait diversification. Am J Bot (2011) 0.89
Measurement of the modulation transfer function of an X-ray microscope based on multiple Fourier orders analysis of a Siemens star. Opt Express (2015) 0.86
High quality long-term CD4+ and CD8+ effector memory populations stimulated by DNA-LACK/MVA-LACK regimen in Leishmania major BALB/c model of infection. PLoS One (2012) 0.85
An expanded evolutionary role for flower symmetry genes. J Biol (2009) 0.85
Role of TCP Gene BRANCHED1 in the Control of Shoot Branching in Arabidopsis. Plant Signal Behav (2007) 0.83
Distinct heat-shock element arrangements that mediate the heat shock, but not the late-embryogenesis induction of small heat-shock proteins, correlate with promoter activation in root-knot nematode feeding cells. Plant Mol Biol (2007) 0.81
Improving miRNA-mRNA interaction predictions. BMC Genomics (2014) 0.80
New vaccinia virus promoter as a potential candidate for future vaccines. J Gen Virol (2013) 0.80
Adjuvant-like effect of vaccinia virus 14K protein: a case study with malaria vaccine based on the circumsporozoite protein. J Immunol (2012) 0.79
Variable internal flexibility characterizes the helical capsid formed by agrobacterium VirE2 protein on single-stranded DNA. Structure (2013) 0.78
Erwinia chrysanthemi genes specifically induced during infection in chicory leaves. Mol Plant Pathol (2002) 0.77