Published in Nucleic Acids Res on November 27, 2006
Omics-based identification of Arabidopsis Myb transcription factors regulating aliphatic glucosinolate biosynthesis. Proc Natl Acad Sci U S A (2007) 4.13
ATTED-II provides coexpressed gene networks for Arabidopsis. Nucleic Acids Res (2008) 3.70
COXPRESdb: a database of coexpressed gene networks in mammals. Nucleic Acids Res (2007) 2.86
An Arabidopsis gene network based on the graphical Gaussian model. Genome Res (2007) 2.45
Comprehensive flavonol profiling and transcriptome coexpression analysis leading to decoding gene-metabolite correlations in Arabidopsis. Plant Cell (2008) 2.45
A systems approach reveals regulatory circuitry for Arabidopsis trichome initiation by the GL3 and GL1 selectors. PLoS Genet (2009) 2.07
Transcriptomic analysis of Chinese bayberry (Myrica rubra) fruit development and ripening using RNA-Seq. BMC Genomics (2012) 2.07
Unraveling transcriptional control in Arabidopsis using cis-regulatory elements and coexpression networks. Plant Physiol (2009) 1.90
Coexpression landscape in ATTED-II: usage of gene list and gene network for various types of pathways. J Plant Res (2010) 1.82
Functional analysis of a predicted flavonol synthase gene family in Arabidopsis. Plant Physiol (2008) 1.81
Arabidopsis gene co-expression network and its functional modules. BMC Bioinformatics (2009) 1.77
GeneCAT--novel webtools that combine BLAST and co-expression analyses. Nucleic Acids Res (2008) 1.70
PlantPAN: Plant promoter analysis navigator, for identifying combinatorial cis-regulatory elements with distance constraint in plant gene groups. BMC Genomics (2008) 1.68
ATTED-II updates: condition-specific gene coexpression to extend coexpression analyses and applications to a broad range of flowering plants. Plant Cell Physiol (2011) 1.67
Members of the LBD family of transcription factors repress anthocyanin synthesis and affect additional nitrogen responses in Arabidopsis. Plant Cell (2009) 1.66
CYP704B1 is a long-chain fatty acid omega-hydroxylase essential for sporopollenin synthesis in pollen of Arabidopsis. Plant Physiol (2009) 1.61
CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol (2008) 1.60
PAMP (pathogen-associated molecular pattern)-induced changes in plasma membrane compartmentalization reveal novel components of plant immunity. J Biol Chem (2010) 1.59
Combining genome-wide association mapping and transcriptional networks to identify novel genes controlling glucosinolates in Arabidopsis thaliana. PLoS Biol (2011) 1.54
Widely targeted metabolomics based on large-scale MS/MS data for elucidating metabolite accumulation patterns in plants. Plant Cell Physiol (2008) 1.52
'Unknown' proteins and 'orphan' enzymes: the missing half of the engineering parts list--and how to find it. Biochem J (2009) 1.47
AtMetExpress development: a phytochemical atlas of Arabidopsis development. Plant Physiol (2009) 1.46
Analysis of the Arabidopsis histidine kinase ATHK1 reveals a connection between vegetative osmotic stress sensing and seed maturation. Plant Cell (2008) 1.43
Regulon organization of Arabidopsis. BMC Plant Biol (2008) 1.42
A plant-specific calreticulin is a key retention factor for a defective brassinosteroid receptor in the endoplasmic reticulum. Proc Natl Acad Sci U S A (2009) 1.40
Systems and trans-system level analysis identifies conserved iron deficiency responses in the plant lineage. Plant Cell (2012) 1.38
Genomics and bioinformatics resources for crop improvement. Plant Cell Physiol (2010) 1.33
OryzaExpress: an integrated database of gene expression networks and omics annotations in rice. Plant Cell Physiol (2010) 1.30
LAP5 and LAP6 encode anther-specific proteins with similarity to chalcone synthase essential for pollen exine development in Arabidopsis. Plant Physiol (2010) 1.29
A chloroplastic UDP-glucose pyrophosphorylase from Arabidopsis is the committed enzyme for the first step of sulfolipid biosynthesis. Plant Cell (2009) 1.27
Gene coexpression network analysis as a source of functional annotation for rice genes. PLoS One (2011) 1.25
Unbiased characterization of genotype-dependent metabolic regulations by metabolomic approach in Arabidopsis thaliana. BMC Syst Biol (2007) 1.25
Network quantitative trait loci mapping of circadian clock outputs identifies metabolic pathway-to-clock linkages in Arabidopsis. Plant Cell (2011) 1.24
Tackling drought stress: receptor-like kinases present new approaches. Plant Cell (2012) 1.23
Demethylesterification of the primary wall by PECTIN METHYLESTERASE35 provides mechanical support to the Arabidopsis stem. Plant Cell (2012) 1.21
Distinct functions for the two PsbP-like proteins PPL1 and PPL2 in the chloroplast thylakoid lumen of Arabidopsis. Plant Physiol (2007) 1.21
Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Plant Physiol (2012) 1.20
ATTED-II in 2014: evaluation of gene coexpression in agriculturally important plants. Plant Cell Physiol (2013) 1.19
Arabidopsis class I and class II TCP transcription factors regulate jasmonic acid metabolism and leaf development antagonistically. Plant Physiol (2012) 1.19
BRANCHED1 promotes axillary bud dormancy in response to shade in Arabidopsis. Plant Cell (2013) 1.18
Multi-dimensional correlations for gene coexpression and application to the large-scale data of Arabidopsis. Bioinformatics (2009) 1.17
The Arabidopsis DELLA RGA-LIKE3 is a direct target of MYC2 and modulates jasmonate signaling responses. Plant Cell (2012) 1.16
The DNA replication checkpoint aids survival of plants deficient in the novel replisome factor ETG1. EMBO J (2008) 1.15
NAC family proteins NARS1/NAC2 and NARS2/NAM in the outer integument regulate embryogenesis in Arabidopsis. Plant Cell (2008) 1.12
Gene coexpression clusters and putative regulatory elements underlying seed storage reserve accumulation in Arabidopsis. BMC Genomics (2011) 1.10
AthaMap, integrating transcriptional and post-transcriptional data. Nucleic Acids Res (2008) 1.08
R2R3-type MYB transcription factor, CmMYB1, is a central nitrogen assimilation regulator in Cyanidioschyzon merolae. Proc Natl Acad Sci U S A (2009) 1.08
Omics-based approaches to methionine side chain elongation in Arabidopsis: characterization of the genes encoding methylthioalkylmalate isomerase and methylthioalkylmalate dehydrogenase. Plant Cell Physiol (2009) 1.07
Arabidopsis CURVATURE THYLAKOID1 proteins modify thylakoid architecture by inducing membrane curvature. Plant Cell (2013) 1.07
Transcriptome analysis by GeneTrail revealed regulation of functional categories in response to alterations of iron homeostasis in Arabidopsis thaliana. BMC Plant Biol (2011) 1.06
Global landscape of a co-expressed gene network in barley and its application to gene discovery in Triticeae crops. Plant Cell Physiol (2011) 1.06
CORNET: a user-friendly tool for data mining and integration. Plant Physiol (2010) 1.05
Callose synthase GSL7 is necessary for normal phloem transport and inflorescence growth in Arabidopsis. Plant Physiol (2010) 1.02
Transcription factor target prediction using multiple short expression time series from Arabidopsis thaliana. BMC Bioinformatics (2007) 1.02
ATTED-II in 2016: A Plant Coexpression Database Towards Lineage-Specific Coexpression. Plant Cell Physiol (2015) 1.00
A subgroup of SGS3-like proteins act redundantly in RNA-directed DNA methylation. Nucleic Acids Res (2012) 1.00
BOBBER1 is a noncanonical Arabidopsis small heat shock protein required for both development and thermotolerance. Plant Physiol (2009) 0.99
Small chloroplast-targeted DnaJ proteins are involved in optimization of photosynthetic reactions in Arabidopsis thaliana. BMC Plant Biol (2010) 0.97
Comprehensive network analysis of anther-expressed genes in rice by the combination of 33 laser microdissection and 143 spatiotemporal microarrays. PLoS One (2011) 0.97
Transcriptional and metabolic programs following exposure of plants to UV-B irradiation. Plant Signal Behav (2011) 0.97
Functional analysis of Arabidopsis immune-related MAPKs uncovers a role for MPK3 as negative regulator of inducible defences. Genome Biol (2014) 0.95
NAI2 is an endoplasmic reticulum body component that enables ER body formation in Arabidopsis thaliana. Plant Cell (2008) 0.94
The photosynthesis affected mutant68-like protein evolved from a PSII assembly factor to mediate assembly of the chloroplast NAD(P)H dehydrogenase complex in Arabidopsis. Plant Cell (2013) 0.93
COBRA-LIKE2, a member of the glycosylphosphatidylinositol-anchored COBRA-LIKE family, plays a role in cellulose deposition in arabidopsis seed coat mucilage secretory cells. Plant Physiol (2015) 0.92
Linking gene expression and membrane lipid composition of Arabidopsis. Plant Cell (2014) 0.91
Identification of Novel Peptidyl Serine α-Galactosyltransferase Gene Family in Plants. J Biol Chem (2014) 0.91
Comparative transcriptomic characterization of aluminum, sodium chloride, cadmium and copper rhizotoxicities in Arabidopsis thaliana. BMC Plant Biol (2009) 0.90
ANAP: an integrated knowledge base for Arabidopsis protein interaction network analysis. Plant Physiol (2012) 0.90
Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis. BMC Bioinformatics (2011) 0.89
AthaMap-assisted transcription factor target gene identification in Arabidopsis thaliana. Database (Oxford) (2010) 0.88
Prospecting for genes involved in transcriptional regulation of plant defenses, a bioinformatics approach. BMC Plant Biol (2011) 0.88
Gene network landscape of the ciliate Tetrahymena thermophila. PLoS One (2011) 0.88
SFGD: a comprehensive platform for mining functional information from soybean transcriptome data and its use in identifying acyl-lipid metabolism pathways. BMC Genomics (2014) 0.88
Exploring the shallow end; estimating information content in transcriptomics studies. Front Plant Sci (2012) 0.87
A transcriptional dynamic network during Arabidopsis thaliana pollen development. BMC Syst Biol (2011) 0.87
Human gene correlation analysis (HGCA): a tool for the identification of transcriptionally co-expressed genes. BMC Res Notes (2012) 0.86
Integration of interactive, multi-scale network navigation approach with Cytoscape for functional genomics in the big data era. BMC Genomics (2012) 0.86
Identification of novel motif patterns to decipher the promoter architecture of co-expressed genes in Arabidopsis thaliana. BMC Syst Biol (2013) 0.85
Bioinformatic and systems biology tools to generate testable models of signaling pathways and their targets. Plant Physiol (2009) 0.85
Modulation of sulfur metabolism enables efficient glucosinolate engineering. BMC Biotechnol (2011) 0.85
SVD-based anatomy of gene expressions for correlation analysis in Arabidopsis thaliana. DNA Res (2008) 0.85
The novel plant protein INAPERTURATE POLLEN1 marks distinct cellular domains and controls formation of apertures in the Arabidopsis pollen exine. Plant Cell (2012) 0.84
Specialized roles of the conserved subunit OST3/6 of the oligosaccharyltransferase complex in innate immunity and tolerance to abiotic stresses. Plant Physiol (2013) 0.84
Arabidopsis thaliana glyoxalase 2-1 is required during abiotic stress but is not essential under normal plant growth. PLoS One (2014) 0.84
Natural variation in flavonol accumulation in Arabidopsis is determined by the flavonol glucosyltransferase BGLU6. J Exp Bot (2015) 0.84
Detection and interpretation of metabolite-transcript coresponses using combined profiling data. Bioinformatics (2011) 0.84
Genetical Genomics Reveals Large Scale Genotype-By-Environment Interactions in Arabidopsis thaliana. Front Genet (2013) 0.84
Internet Resources for Gene Expression Analysis in Arabidopsis thaliana. Curr Genomics (2008) 0.84
Omics and bioinformatics: an essential toolbox for systems analyses of plant functions beyond 2010. Plant Cell Physiol (2009) 0.83
UniVIO: a multiple omics database with hormonome and transcriptome data from rice. Plant Cell Physiol (2013) 0.83
Transcriptome and metabolome analysis of plant sulfate starvation and resupply provides novel information on transcriptional regulation of metabolism associated with sulfur, nitrogen and phosphorus nutritional responses in Arabidopsis. Front Plant Sci (2015) 0.83
The Arabidopsis LRR-RLK, PXC1, is a regulator of secondary wall formation correlated with the TDIF-PXY/TDR-WOX4 signaling pathway. BMC Plant Biol (2013) 0.83
GUN1 Controls Accumulation of the Plastid Ribosomal Protein S1 at the Protein Level and Interacts with Proteins Involved in Plastid Protein Homeostasis. Plant Physiol (2016) 0.82
'MicroRNA Targets', a new AthaMap web-tool for genome-wide identification of miRNA targets in Arabidopsis thaliana. BioData Min (2012) 0.82
Genetic evidence for the reduction of brassinosteroid levels by a BAHD acyltransferase-like protein in Arabidopsis. Plant Physiol (2012) 0.82
Plasmodesmata "in Communicado". Front Plant Sci (2012) 0.82
Function of Arabidopsis hexokinase-like1 as a negative regulator of plant growth. J Exp Bot (2009) 0.82
KAGIANA: an excel-based tool for retrieving summary information on Arabidopsis genes. Plant Cell Physiol (2008) 0.81
Learning from Co-expression Networks: Possibilities and Challenges. Front Plant Sci (2016) 0.81
Arabidopsis ensemble reverse-engineered gene regulatory network discloses interconnected transcription factors in oxidative stress. Plant Cell (2014) 0.81
Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci U S A (1998) 192.97
Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics (2003) 100.88
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature (2000) 70.33
From genomics to chemical genomics: new developments in KEGG. Nucleic Acids Res (2006) 44.35
Predicting subcellular localization of proteins based on their N-terminal amino acid sequence. J Mol Biol (2000) 22.77
The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community. Nucleic Acids Res (2003) 18.69
NCBI GEO: mining millions of expression profiles--database and tools. Nucleic Acids Res (2005) 17.61
Plant cis-acting regulatory DNA elements (PLACE) database: 1999. Nucleic Acids Res (1999) 13.02
Regulatory element detection using correlation with expression. Nat Genet (2001) 8.92
ArrayExpress--a public repository for microarray gene expression data at the EBI. Nucleic Acids Res (2005) 6.73
PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Res (2002) 6.43
Differential gene expression in response to mechanical wounding and insect feeding in Arabidopsis. Plant Cell (2000) 6.40
CIBEX: center for information biology gene expression database. C R Biol (2004) 6.16
The Botany Array Resource: e-Northerns, Expression Angling, and promoter analyses. Plant J (2005) 6.07
NASCArrays: a repository for microarray data generated by NASC's transcriptomics service. Nucleic Acids Res (2004) 5.82
JASMONATE-INSENSITIVE1 encodes a MYC transcription factor essential to discriminate between different jasmonate-regulated defense responses in Arabidopsis. Plant Cell (2004) 5.28
Functional annotation of the Arabidopsis genome using controlled vocabularies. Plant Physiol (2004) 5.17
ABFs, a family of ABA-responsive element binding factors. J Biol Chem (2000) 4.98
Isolation and functional analysis of Arabidopsis stress-inducible NAC transcription factors that bind to a drought-responsive cis-element in the early responsive to dehydration stress 1 promoter. Plant Cell (2004) 4.53
Identification of genes required for cellulose synthesis by regression analysis of public microarray data sets. Proc Natl Acad Sci U S A (2005) 4.45
A chloroplast lipoxygenase is required for wound-induced jasmonic acid accumulation in Arabidopsis. Proc Natl Acad Sci U S A (1995) 3.56
A dehydration-induced NAC protein, RD26, is involved in a novel ABA-dependent stress-signaling pathway. Plant J (2004) 3.31
MetaCyc and AraCyc. Metabolic pathway databases for plant research. Plant Physiol (2005) 3.00
CSB.DB: a comprehensive systems-biology database. Bioinformatics (2004) 2.98
Jasmonic acid carboxyl methyltransferase: a key enzyme for jasmonate-regulated plant responses. Proc Natl Acad Sci U S A (2001) 2.84
Gene-expression analysis and network discovery using Genevestigator. Trends Plant Sci (2005) 2.69
AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks. Plant Physiol (2006) 2.62
Genome wide analysis of Arabidopsis core promoters. BMC Genomics (2005) 2.24
Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis. Nucleic Acids Res (2006) 2.19
An Arabidopsis thaliana gene for methylsalicylate biosynthesis, identified by a biochemical genomics approach, has a role in defense. Plant J (2003) 1.94
KaPPA-view: a web-based analysis tool for integration of transcript and metabolite data on plant metabolic pathway maps. Plant Physiol (2005) 1.90
Cis-regulatory element based targeted gene finding: genome-wide identification of abscisic acid- and abiotic stress-responsive genes in Arabidopsis thaliana. Bioinformatics (2005) 1.74
Inferring hypotheses on functional relationships of genes: Analysis of the Arabidopsis thaliana subtilase gene family. PLoS Comput Biol (2005) 1.67
Transcriptional co-regulation of secondary metabolism enzymes in Arabidopsis: functional and evolutionary implications. Plant Mol Biol (2005) 1.57
Transcription factor veracity: is GBF3 responsible for ABA-regulated expression of Arabidopsis Adh? Plant Cell (1996) 1.57
AthaMap: an online resource for in silico transcription factor binding sites in the Arabidopsis thaliana genome. Nucleic Acids Res (2004) 1.51
Identification of brassinosteroid-related genes by means of transcript co-response analyses. Nucleic Acids Res (2005) 1.50
DNA microarray data and contextual analysis of correlation graphs. BMC Bioinformatics (2003) 1.07
Distinctive features of plant organs characterized by global analysis of gene expression in Arabidopsis. DNA Res (2004) 1.06
A new member of plant CS-lyases. A cystine lyase from Arabidopsis thaliana. J Biol Chem (2003) 0.92
Motif detection in Arabidopsis: correlation with gene expression data. In Silico Biol (2004) 0.92
WoLF PSORT: protein localization predictor. Nucleic Acids Res (2007) 10.14
Complete sequencing and characterization of 21,243 full-length human cDNAs. Nat Genet (2003) 7.98
Integrative annotation of 21,037 human genes validated by full-length cDNA clones. PLoS Biol (2004) 7.17
MassBank: a public repository for sharing mass spectral data for life sciences. J Mass Spectrom (2010) 6.16
Crystal structure of the complex of human epidermal growth factor and receptor extracellular domains. Cell (2002) 5.64
Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Genome Res (2005) 5.22
Extensive feature detection of N-terminal protein sorting signals. Bioinformatics (2002) 5.16
The Jmjd3-Irf4 axis regulates M2 macrophage polarization and host responses against helminth infection. Nat Immunol (2010) 4.66
DBTSS: DataBase of human Transcriptional Start Sites and full-length cDNAs. Nucleic Acids Res (2002) 4.29
PSORT-B: Improving protein subcellular localization prediction for Gram-negative bacteria. Nucleic Acids Res (2003) 4.25
Omics-based identification of Arabidopsis Myb transcription factors regulating aliphatic glucosinolate biosynthesis. Proc Natl Acad Sci U S A (2007) 4.13
Potential of metabolomics as a functional genomics tool. Trends Plant Sci (2004) 4.10
DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information. Nucleic Acids Res (2007) 3.80
The AtGenExpress hormone and chemical treatment data set: experimental design, data evaluation, model data analysis and data access. Plant J (2008) 3.73
Functional genomics by integrated analysis of metabolome and transcriptome of Arabidopsis plants over-expressing an MYB transcription factor. Plant J (2005) 3.73
DBTSS, DataBase of Transcriptional Start Sites: progress report 2004. Nucleic Acids Res (2004) 3.73
ATTED-II provides coexpressed gene networks for Arabidopsis. Nucleic Acids Res (2008) 3.70
Leaf senescence and starvation-induced chlorosis are accelerated by the disruption of an Arabidopsis autophagy gene. Plant Physiol (2002) 3.47
Integration of transcriptomics and metabolomics for understanding of global responses to nutritional stresses in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2004) 3.41
A proposed framework for the description of plant metabolomics experiments and their results. Nat Biotechnol (2004) 3.32
Approaches for extracting practical information from gene co-expression networks in plant biology. Plant Cell Physiol (2007) 3.13
DBTSS: database of transcription start sites, progress report 2008. Nucleic Acids Res (2007) 3.11
Elucidation of gene-to-gene and metabolite-to-gene networks in arabidopsis by integration of metabolomics and transcriptomics. J Biol Chem (2005) 2.98
COXPRESdb: a database of coexpressed gene networks in mammals. Nucleic Acids Res (2007) 2.86
T cell receptor stimulation-induced epigenetic changes and Foxp3 expression are independent and complementary events required for Treg cell development. Immunity (2012) 2.78
12-oxo-phytodienoic acid triggers expression of a distinct set of genes and plays a role in wound-induced gene expression in Arabidopsis. Plant Physiol (2005) 2.72
DBTBS: database of transcriptional regulation in Bacillus subtilis and its contribution to comparative genomics. Nucleic Acids Res (2004) 2.61
PrDOS: prediction of disordered protein regions from amino acid sequence. Nucleic Acids Res (2007) 2.59
Prediction of transcriptional terminators in Bacillus subtilis and related species. PLoS Comput Biol (2005) 2.54
DBTSS: DataBase of Human Transcription Start Sites, progress report 2006. Nucleic Acids Res (2006) 2.52
Comprehensive flavonol profiling and transcriptome coexpression analysis leading to decoding gene-metabolite correlations in Arabidopsis. Plant Cell (2008) 2.45
PRIMe: a Web site that assembles tools for metabolomics and transcriptomics. In Silico Biol (2008) 2.22
Sulfur assimilation in photosynthetic organisms: molecular functions and regulations of transporters and assimilatory enzymes. Annu Rev Plant Biol (2011) 2.18
Rank of correlation coefficient as a comparable measure for biological significance of gene coexpression. DNA Res (2009) 2.11
Prediction of disordered regions in proteins based on the meta approach. Bioinformatics (2008) 2.09
The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. Nucleic Acids Res (2007) 2.07
PrognoScan: a new database for meta-analysis of the prognostic value of genes. BMC Med Genomics (2009) 2.07
Sulphur starvation induces the expression of microRNA-395 and one of its target genes but in different cell types. Plant J (2008) 2.01
A computational model on the modulation of mitogen-activated protein kinase (MAPK) and Akt pathways in heregulin-induced ErbB signalling. Biochem J (2003) 2.00
Metabolite annotations based on the integration of mass spectral information. Plant J (2008) 1.97
Coordinated activation of metabolic pathways for antioxidants and defence compounds by jasmonates and their roles in stress tolerance in Arabidopsis. Plant J (2005) 1.97
Characterization of the ABA-regulated global responses to dehydration in Arabidopsis by metabolomics. Plant J (2008) 1.91
KaPPA-view: a web-based analysis tool for integration of transcript and metabolite data on plant metabolic pathway maps. Plant Physiol (2005) 1.90
Arabidopsis SLIM1 is a central transcriptional regulator of plant sulfur response and metabolism. Plant Cell (2006) 1.86
KNApSAcK family databases: integrated metabolite-plant species databases for multifaceted plant research. Plant Cell Physiol (2011) 1.82
Coexpression landscape in ATTED-II: usage of gene list and gene network for various types of pathways. J Plant Res (2010) 1.82
Comparative genomics and reverse genetics analysis reveal indispensable functions of the serine acetyltransferase gene family in Arabidopsis. Plant Cell (2008) 1.81
UGT73C6 and UGT78D1, glycosyltransferases involved in flavonol glycoside biosynthesis in Arabidopsis thaliana. J Biol Chem (2003) 1.78
Two distinct high-affinity sulfate transporters with different inducibilities mediate uptake of sulfate in Arabidopsis roots. Plant J (2002) 1.72
Transcript profiling of an Arabidopsis PSEUDO RESPONSE REGULATOR arrhythmic triple mutant reveals a role for the circadian clock in cold stress response. Plant Cell Physiol (2009) 1.70
ATTED-II updates: condition-specific gene coexpression to extend coexpression analyses and applications to a broad range of flowering plants. Plant Cell Physiol (2011) 1.67
Members of the LBD family of transcription factors repress anthocyanin synthesis and affect additional nitrogen responses in Arabidopsis. Plant Cell (2009) 1.66
Three enzyme systems for galactoglycerolipid biosynthesis are coordinately regulated in plants. J Biol Chem (2004) 1.66
Site-specific incorporation of an unnatural amino acid into proteins in mammalian cells. Nucleic Acids Res (2002) 1.64
The Tomato Sequencing Project, the first cornerstone of the International Solanaceae Project (SOL). Comp Funct Genomics (2005) 1.63
Statistical indices for simultaneous large-scale metabolite detections for a single NMR spectrum. Anal Chem (2010) 1.62
Recommendations for reporting metabolite data. Plant Cell (2011) 1.61
Galactolipid synthesis in chloroplast inner envelope is essential for proper thylakoid biogenesis, photosynthesis, and embryogenesis. Proc Natl Acad Sci U S A (2007) 1.60
Hedgehog signal activation in gastric pit cell and in diffuse-type gastric cancer. Gastroenterology (2006) 1.60
Massive transcriptional start site analysis of human genes in hypoxia cells. Nucleic Acids Res (2009) 1.60
Metabolic pathways involved in cold acclimation identified by integrated analysis of metabolites and transcripts regulated by DREB1A and DREB2A. Plant Physiol (2009) 1.60
Structure-based prediction of DNA-binding sites on proteins using the empirical preference of electrostatic potential and the shape of molecular surfaces. Proteins (2004) 1.57
Genome-wide analysis reveals strong correlation between CpG islands with nearby transcription start sites of genes and their tissue specificity. Gene (2005) 1.57
Genome-wide characterization of transcriptional start sites in humans by integrative transcriptome analysis. Genome Res (2011) 1.57
Structural insights into eRF3 and stop codon recognition by eRF1. Genes Dev (2009) 1.57
MS/MS spectral tag-based annotation of non-targeted profile of plant secondary metabolites. Plant J (2009) 1.55
Large-scale analysis of gene expression profiles during early stages of root nodule formation in a model legume, Lotus japonicus. DNA Res (2004) 1.52
Prediction of catalytic residues in enzymes based on known tertiary structure, stability profile, and sequence conservation. J Mol Biol (2003) 1.52
Widely targeted metabolomics based on large-scale MS/MS data for elucidating metabolite accumulation patterns in plants. Plant Cell Physiol (2008) 1.52
Identification of a flavonol 7-O-rhamnosyltransferase gene determining flavonoid pattern in Arabidopsis by transcriptome coexpression analysis and reverse genetics. J Biol Chem (2007) 1.52
HitPredict: a database of quality assessed protein-protein interactions in nine species. Nucleic Acids Res (2010) 1.50
COXPRESdb: a database to compare gene coexpression in seven model animals. Nucleic Acids Res (2010) 1.50
Recent advances in the biosynthesis and accumulation of anthocyanins. Nat Prod Rep (2003) 1.49
Spermidine synthase genes are essential for survival of Arabidopsis. Plant Physiol (2004) 1.49
Enhancement of oxidative and drought tolerance in Arabidopsis by overaccumulation of antioxidant flavonoids. Plant J (2013) 1.49
Impact of clock-associated Arabidopsis pseudo-response regulators in metabolic coordination. Proc Natl Acad Sci U S A (2009) 1.48
Phloem-localizing sulfate transporter, Sultr1;3, mediates re-distribution of sulfur from source to sink organs in Arabidopsis. Plant Physiol (2003) 1.48
AtMetExpress development: a phytochemical atlas of Arabidopsis development. Plant Physiol (2009) 1.46
COXPRESdb: a database of comparative gene coexpression networks of eleven species for mammals. Nucleic Acids Res (2012) 1.46
Arabidopsis lipins mediate eukaryotic pathway of lipid metabolism and cope critically with phosphate starvation. Proc Natl Acad Sci U S A (2009) 1.44
A novel phosphatidylcholine-hydrolyzing phospholipase C induced by phosphate starvation in Arabidopsis. J Biol Chem (2004) 1.41
Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. BMC Genomics (2010) 1.41