Published in Nanotoxicology on June 07, 2013
Multi-walled carbon nanotube-induced gene expression in vitro: concordance with in vivo studies. Toxicology (2014) 0.81
Issues and applications in label-free quantitative mass spectrometry. Int J Proteomics (2013) 0.78
Use of whole genome expression analysis in the toxicity screening of nanoparticles. Toxicol Appl Pharmacol (2014) 0.76
Toxicological assessment of multi-walled carbon nanotubes in vitro: potential mitochondria effects on male reproductive cells. Oncotarget (2016) 0.76
Bioinformatic Analysis of Differential Protein Expression in Calu-3 Cells Exposed to Carbon Nanotubes. Proteomes (2013) 0.75
Properties of Retinal Precursor Cells Grown on Vertically Aligned Multiwalled Carbon Nanotubes Generated for the Modification of Retinal Implant-Embedded Microelectrode Arrays. J Ophthalmol (2016) 0.75
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics (2003) 82.89
TM4: a free, open-source system for microarray data management and analysis. Biotechniques (2003) 38.02
Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. Anal Chem (2002) 35.30
A statistical model for identifying proteins by tandem mass spectrometry. Anal Chem (2003) 29.58
Principles for characterizing the potential human health effects from exposure to nanomaterials: elements of a screening strategy. Part Fibre Toxicol (2005) 6.04
Checking on the fork: the DNA-replication stress-response pathway. Trends Cell Biol (2002) 3.66
Cytotoxicity of carbon nanomaterials: single-wall nanotube, multi-wall nanotube, and fullerene. Environ Sci Technol (2005) 3.12
Inflammatory cytokines induce DNA damage and inhibit DNA repair in cholangiocarcinoma cells by a nitric oxide-dependent mechanism. Cancer Res (2000) 2.38
Carbon nanotubes show no sign of acute toxicity but induce intracellular reactive oxygen species in dependence on contaminants. Toxicol Lett (2006) 2.36
Pulmonary instillation studies with nanoscale TiO2 rods and dots in rats: toxicity is not dependent upon particle size and surface area. Toxicol Sci (2006) 2.34
The aryl hydrocarbon receptor: a perspective on potential roles in the immune system. Immunology (2009) 2.31
Particle length-dependent titanium dioxide nanomaterials toxicity and bioactivity. Part Fibre Toxicol (2009) 2.06
Distribution and persistence of pleural penetrations by multi-walled carbon nanotubes. Part Fibre Toxicol (2010) 2.05
Mechanisms of pulmonary toxicity and medical applications of carbon nanotubes: Two faces of Janus? Pharmacol Ther (2008) 1.85
Quantitative techniques for assessing and controlling the dispersion and biological effects of multiwalled carbon nanotubes in mammalian tissue culture cells. ACS Nano (2010) 1.78
Titanium dioxide nanoparticles induce DNA damage and genetic instability in vivo in mice. Cancer Res (2009) 1.71
Interlaboratory evaluation of in vitro cytotoxicity and inflammatory responses to engineered nanomaterials: the NIEHS Nano GO Consortium. Environ Health Perspect (2013) 1.68
Reviewing the environmental and human health knowledge base of carbon nanotubes. Environ Health Perspect (2007) 1.40
Concordance between in vitro and in vivo dosimetry in the proinflammatory effects of low-toxicity, low-solubility particles: the key role of the proximal alveolar region. Inhal Toxicol (2008) 1.39
Fast microwave-assisted purification, functionalization and dispersion of multi-walled carbon nanotubes. J Nanosci Nanotechnol (2008) 1.38
Toxicological effects of titanium dioxide nanoparticles: a review of in vitro mammalian studies. Eur Rev Med Pharmacol Sci (2011) 1.36
The Q705K polymorphism in NLRP3 is a gain-of-function alteration leading to excessive interleukin-1β and IL-18 production. PLoS One (2012) 1.36
Titanium dioxide nanoparticles trigger p53-mediated damage response in peripheral blood lymphocytes. Environ Mol Mutagen (2008) 1.30
Identifying the pulmonary hazard of high aspect ratio nanoparticles to enable their safety-by-design. Nanomedicine (Lond) (2011) 1.28
Origin of photocatalytic activity of nitrogen-doped TiO2 nanobelts. J Am Chem Soc (2009) 1.22
Single- and multi-wall carbon nanotubes versus asbestos: are the carbon nanotubes a new health risk to humans? J Toxicol Environ Health A (2010) 1.22
Cytotoxic effects of aggregated nanomaterials. Acta Biomater (2007) 1.20
A novel alignment method and multiple filters for exclusion of unqualified peptides to enhance label-free quantification using peptide intensity in LC-MS/MS. J Proteome Res (2011) 1.12
A comparison of acute and long-term effects of industrial multiwalled carbon nanotubes on human lung and immune cells in vitro. Toxicol Lett (2010) 1.09
Characterization of Caco-2 and HT29-MTX cocultures in an in vitro digestion/cell culture model used to predict iron bioavailability. J Nutr Biochem (2008) 1.07
HT29-MTX/Caco-2 cocultures as an in vitro model for the intestinal epithelium: in vitro-in vivo correlation with permeability data from rats and humans. J Pharm Sci (1996) 1.05
Differences in the effects of fibrous and particulate titanium dioxide on alveolar macrophages of Fischer 344 rats. J Toxicol Environ Health A (2002) 1.00
Aerosolized ZnO nanoparticles induce toxicity in alveolar type II epithelial cells at the air-liquid interface. Toxicol Sci (2011) 0.98
DNA damage and alterations in expression of DNA damage responsive genes induced by TiO2 nanoparticles in human hepatoma HepG2 cells. Nanotoxicology (2010) 0.97
Cytotoxicity assessment of some carbon nanotubes and related carbon nanoparticle aggregates and the implications for anthropogenic carbon nanotube aggregates in the environment. Int J Environ Res Public Health (2005) 0.96
Cellular toxicity of TiO2-based nanofilaments. ACS Nano (2009) 0.94
Preparation and Characterization Challenges to Understanding Environmental and Biological Impacts of Nanoparticles. Surf Interface Anal (2012) 0.94
Cytotoxicity of carboxylic acid functionalized single wall carbon nanotubes on the human intestinal cell line Caco-2. Toxicol In Vitro (2009) 0.93
Bioinformatics Resource Manager v2.3: an integrated software environment for systems biology with microRNA and cross-species analysis tools. BMC Bioinformatics (2012) 0.88
Nano-TiO2-induced apoptosis by oxidative stress-mediated DNA damage and activation of p53 in human embryonic kidney cells. Appl Biochem Biotechnol (2012) 0.88
Effect of carbon nanoparticles on renal epithelial cell structure, barrier function, and protein expression. Nanotoxicology (2010) 0.87
Colony Forming Efficiency and microscopy analysis of multi-wall carbon nanotubes cell interaction. Toxicol Lett (2010) 0.80
Changes in expression of drug-metabolizing enzymes by single-walled carbon nanotubes in human respiratory tract cells. Drug Metab Dispos (2011) 0.78
Particokinetics in vitro: dosimetry considerations for in vitro nanoparticle toxicity assessments. Toxicol Sci (2006) 3.26
Temporal proteome and lipidome profiles reveal hepatitis C virus-associated reprogramming of hepatocellular metabolism and bioenergetics. PLoS Pathog (2010) 2.48
ISDD: A computational model of particle sedimentation, diffusion and target cell dosimetry for in vitro toxicity studies. Part Fibre Toxicol (2010) 2.15
Particle length-dependent titanium dioxide nanomaterials toxicity and bioactivity. Part Fibre Toxicol (2009) 2.06
Mitochondrial matrix phosphoproteome: effect of extra mitochondrial calcium. Biochemistry (2006) 2.06
Proteome and computational analyses reveal new insights into the mechanisms of hepatitis C virus-mediated liver disease posttransplantation. Hepatology (2012) 1.82
Effects of nanomaterial physicochemical properties on in vivo toxicity. Adv Drug Deliv Rev (2009) 1.80
Interlaboratory evaluation of in vitro cytotoxicity and inflammatory responses to engineered nanomaterials: the NIEHS Nano GO Consortium. Environ Health Perspect (2013) 1.68
Silica binding and toxicity in alveolar macrophages. Free Radic Biol Med (2007) 1.65
Macrophage responses to silica nanoparticles are highly conserved across particle sizes. Toxicol Sci (2008) 1.55
MARCO mediates silica uptake and toxicity in alveolar macrophages from C57BL/6 mice. J Biol Chem (2006) 1.54
Investigating the correspondence between transcriptomic and proteomic expression profiles using coupled cluster models. Bioinformatics (2008) 1.51
Intralymphatic chemotherapy using a hyaluronan-cisplatin conjugate. J Surg Res (2008) 1.47
Mathematical Nanotoxicoproteomics: Quantitative Characterization of Effects of Multi-walled Carbon Nanotubes (MWCNT) and TiO2 Nanobelts (TiO2-NB) on Protein Expression Patterns in Human Intestinal Cells. Curr Comput Aided Drug Des (2016) 1.39
Combined statistical analyses of peptide intensities and peptide occurrences improves identification of significant peptides from MS-based proteomics data. J Proteome Res (2010) 1.34
Host regulatory network response to infection with highly pathogenic H5N1 avian influenza virus. J Virol (2011) 1.30
Enabling high-throughput data management for systems biology: the Bioinformatics Resource Manager. Bioinformatics (2007) 1.23
Scavenger receptor class A type I/II (CD204) null mice fail to develop fibrosis following silica exposure. Am J Physiol Lung Cell Mol Physiol (2005) 1.23
Trees as reservoirs for amphibole fibers in Libby, Montana. Sci Total Environ (2006) 1.23
Characterization of the renal cyst fluid proteome in autosomal dominant polycystic kidney disease (ADPKD) patients. Proteomics Clin Appl (2008) 1.22
Perivascular adipose tissue potentiates contraction of coronary vascular smooth muscle: influence of obesity. Circulation (2013) 1.22
A comparison of dispersing media for various engineered carbon nanoparticles. Part Fibre Toxicol (2007) 1.21
Asymmetric dimethylarginine induces oxidative and nitrosative stress in murine lung epithelial cells. Am J Respir Cell Mol Biol (2006) 1.19
Silica-directed mast cell activation is enhanced by scavenger receptors. Am J Respir Cell Mol Biol (2006) 1.18
Effects of polymer wrapping and covalent functionalization on the stability of MWCNT in aqueous dispersions. J Colloid Interface Sci (2010) 1.18
Effect of multi-walled carbon nanotube surface modification on bioactivity in the C57BL/6 mouse model. Nanotoxicology (2013) 1.17
Differential mouse pulmonary dose and time course responses to titanium dioxide nanospheres and nanobelts. Toxicol Sci (2012) 1.15
Improved quality control processing of peptide-centric LC-MS proteomics data. Bioinformatics (2011) 1.15
Effect of MWCNT size, carboxylation, and purification on in vitro and in vivo toxicity, inflammation and lung pathology. Part Fibre Toxicol (2013) 1.15
A statistical selection strategy for normalization procedures in LC-MS proteomics experiments through dataset-dependent ranking of normalization scaling factors. Proteomics (2011) 1.14
Silver nanoparticle protein corona composition in cell culture media. PLoS One (2013) 1.13
Probing conformational changes of gramicidin ion channels by single-molecule patch-clamp fluorescence microscopy. Biophys J (2003) 1.13
Pharmacokinetics and disposition of a localized lymphatic polymeric hyaluronan conjugate of cisplatin in rodents. J Pharm Sci (2010) 1.12
AHR2 mutant reveals functional diversity of aryl hydrocarbon receptors in zebrafish. PLoS One (2012) 1.12
A novel alignment method and multiple filters for exclusion of unqualified peptides to enhance label-free quantification using peptide intensity in LC-MS/MS. J Proteome Res (2011) 1.12
The impact of blood contamination on the proteome of cerebrospinal fluid. Proteomics (2005) 1.12
A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics. Bioinformatics (2008) 1.12
Critical role of MARCO in crystalline silica-induced pulmonary inflammation. Toxicol Sci (2009) 1.11
Innate immune processes are sufficient for driving silicosis in mice. J Leukoc Biol (2010) 1.11
A novel intralymphatic nanocarrier delivery system for cisplatin therapy in breast cancer with improved tumor efficacy and lower systemic toxicity in vivo. Am J Surg (2009) 1.10
The Big Sky Model: A Regional Collaboration for Participatory Research on Environmental Health in the Rural West. J High Educ Outreach Engagem (2008) 1.10
IL-33 mediates multi-walled carbon nanotube (MWCNT)-induced airway hyper-reactivity via the mobilization of innate helper cells in the lung. Nanotoxicology (2012) 1.09
Elevated asymmetric dimethylarginine alters lung function and induces collagen deposition in mice. Am J Respir Cell Mol Biol (2008) 1.09
Release of severe acute respiratory syndrome coronavirus nuclear import block enhances host transcription in human lung cells. J Virol (2013) 1.08
Controlling the response: predictive modeling of a highly central, pathogen-targeted core response module in macrophage activation. PLoS One (2011) 1.08
Comparative proteomics and pulmonary toxicity of instilled single-walled carbon nanotubes, crocidolite asbestos, and ultrafine carbon black in mice. Toxicol Sci (2010) 1.07
Comparison of nanotube-protein corona composition in cell culture media. Small (2013) 1.06
IL-1R signalling is critical for regulation of multi-walled carbon nanotubes-induced acute lung inflammation in C57Bl/6 mice. Nanotoxicology (2012) 1.04
MicroRNAs control neurobehavioral development and function in zebrafish. FASEB J (2012) 1.04
Mechanisms of severe acute respiratory syndrome coronavirus-induced acute lung injury. MBio (2013) 1.04
Application of pressure cycling technology to tissue sample preparation for 2-DE. Electrophoresis (2007) 1.02
Comparative developmental toxicity of environmentally relevant oxygenated PAHs. Toxicol Appl Pharmacol (2013) 1.02
A comparative analysis of computational approaches to relative protein quantification using peptide peak intensities in label-free LC-MS proteomics experiments. Proteomics (2012) 1.01
A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics. Bioinformatics (2010) 1.00
Systems virology identifies a mitochondrial fatty acid oxidation enzyme, dodecenoyl coenzyme A delta isomerase, required for hepatitis C virus replication and likely pathogenesis. J Virol (2011) 1.00
NLRP3 inflammasome activation in murine alveolar macrophages and related lung pathology is associated with MWCNT nickel contamination. Inhal Toxicol (2012) 1.00
Carrier-based intralymphatic cisplatin chemotherapy for the treatment of metastatic squamous cell carcinoma of the head & neck. Ther Deliv (2010) 1.00
Asymmetric dimethylarginine potentiates lung inflammation in a mouse model of allergic asthma. Am J Physiol Lung Cell Mol Physiol (2010) 0.99
Lysophosphatidic acid induces chemotaxis in MC3T3-E1 osteoblastic cells. Bone (2006) 0.99
The IL-4Ralpha pathway in macrophages and its potential role in silica-induced pulmonary fibrosis. J Leukoc Biol (2007) 0.99
Alterations in the aqueous humor proteome in patients with a glaucoma shunt device. Mol Vis (2011) 0.98
Polycyclic aromatic hydrocarbons as skin carcinogens: comparison of benzo[a]pyrene, dibenzo[def,p]chrysene and three environmental mixtures in the FVB/N mouse. Toxicol Appl Pharmacol (2012) 0.98
Aerosolized ZnO nanoparticles induce toxicity in alveolar type II epithelial cells at the air-liquid interface. Toxicol Sci (2011) 0.98
Purification and sidewall functionalization of multiwalled carbon nanotubes and resulting bioactivity in two macrophage models. Inhal Toxicol (2013) 0.98
Conserved host response to highly pathogenic avian influenza virus infection in human cell culture, mouse and macaque model systems. BMC Syst Biol (2011) 0.97
COPD is associated with a macrophage scavenger receptor-1 gene sequence variation. Chest (2010) 0.97
Surface components of airborne particulate matter induce macrophage apoptosis through scavenger receptors. Toxicol Appl Pharmacol (2002) 0.97
Immunoglobulin and lymphocyte responses following silica exposure in New Zealand mixed mice. Inhal Toxicol (2004) 0.97
Increase in a distinct pulmonary macrophage subset possessing an antigen-presenting cell phenotype and in vitro APC activity following silica exposure. Toxicol Appl Pharmacol (2005) 0.97
Structural and functional analyses of liver cysts from the BALB/c-cpk mouse model of polycystic kidney disease. Exp Biol Med (Maywood) (2008) 0.97
Nanoparticle toxicity by the gastrointestinal route: evidence and knowledge gaps. Int J Biomed Nanosci Nanotechnol (2013) 0.96
Silica, apoptosis, and autoimmunity. J Immunotoxicol (2005) 0.96
Differential binding of inorganic particles to MARCO. Toxicol Sci (2008) 0.95
Silica-exposed mice generate autoantibodies to apoptotic cells. Toxicology (2004) 0.95
Discovery of novel glucose-regulated proteins in isolated human pancreatic islets using LC-MS/MS-based proteomics. J Proteome Res (2012) 0.94
Topological analysis of protein co-abundance networks identifies novel host targets important for HCV infection and pathogenesis. BMC Syst Biol (2012) 0.94
Enzyme-directed assembly of nanoparticles in tumors monitored by in vivo whole animal imaging and ex vivo super-resolution fluorescence imaging. J Am Chem Soc (2013) 0.93
Nonpulmonary outcomes of asbestos exposure. J Toxicol Environ Health B Crit Rev (2011) 0.93
Sample preparation for two-dimensional gel electrophoresis using pressure cycling technology. Anal Biochem (2007) 0.93
Antigen-presenting cell population dynamics during murine silicosis. Am J Respir Cell Mol Biol (2007) 0.93
Bone growth and turnover in progesterone receptor knockout mice. Endocrinology (2008) 0.93
Impaired collateral development in mature rats. Am J Physiol Heart Circ Physiol (2002) 0.92
Variability of protein content in calcium oxalate monohydrate stones. J Endourol (2006) 0.92
Role of scavenger receptor a family in lung inflammation from exposure to environmental particles. J Immunotoxicol (2008) 0.92
Potential role of the inflammasome-derived inflammatory cytokines in pulmonary fibrosis. Pulm Med (2011) 0.91