Published in Environ Microbiol Rep on July 16, 2009
Pyrosequencing analysis of bacterial biofilm communities in water meters of a drinking water distribution system. Appl Environ Microbiol (2010) 1.35
Methane-fed microbial microcosms show differential community dynamics and pinpoint taxa involved in communal response. ISME J (2014) 1.33
Comparative metatranscriptomics reveals kingdom level changes in the rhizosphere microbiome of plants. ISME J (2013) 1.26
The expanded diversity of methylophilaceae from Lake Washington through cultivation and genomic sequencing of novel ecotypes. PLoS One (2014) 1.19
A metagenomic insight into freshwater methane-utilizing communities and evidence for cooperation between the Methylococcaceae and the Methylophilaceae. PeerJ (2013) 1.08
XoxF is required for expression of methanol dehydrogenase in Methylobacterium extorquens AM1. J Bacteriol (2011) 0.95
Insights into denitrification in Methylotenera mobilis from denitrification pathway and methanol metabolism mutants. J Bacteriol (2013) 0.91
Comparative transcriptomics in three Methylophilaceae species uncover different strategies for environmental adaptation. PeerJ (2013) 0.86
Phyllosphere bacterial community of floating macrophytes in paddy soil environments as revealed by illumina high-throughput sequencing. Appl Environ Microbiol (2014) 0.84
Bacterial community responses to a gradient of alkaline mountaintop mine drainage in Central Appalachian streams. ISME J (2014) 0.84
Molecular characterization of a microbial consortium involved in methane oxidation coupled to denitrification under micro-aerobic conditions. Microb Biotechnol (2013) 0.84
Spatiotemporal analysis of microbial community dynamics during seasonal stratification events in a freshwater lake (Grand Lake, OK, USA). PLoS One (2017) 0.82
Amplicon-based metagenomics identified candidate organisms in soils that caused yield decline in strawberry. Hortic Res (2015) 0.81
Characterization of shed medicinal leech mucus reveals a diverse microbiota. Front Microbiol (2015) 0.80
Biogeochemical Cycle of Methanol in Anoxic Deep-Sea Sediments. Microbes Environ (2016) 0.75
Microbial and Isotopic Evidence for Methane Cycling in Hydrocarbon-Containing Groundwater from the Pennsylvania Region. Front Microbiol (2017) 0.75
Microbial diversity and community structure of denitrifying biological filters operated with different carbon sources. Springerplus (2016) 0.75
Metagenomic analysis of denitrifying wastewater enrichment cultures able to transform the explosive, 3-nitro-1,2,4-triazol-5-one (NTO). J Ind Microbiol Biotechnol (2016) 0.75
Methylophilaceae and Hyphomicrobium as target taxonomic groups in monitoring the function of methanol-fed denitrification biofilters in municipal wastewater treatment plants. J Ind Microbiol Biotechnol (2016) 0.75
Isolation of an autotrophic ammonia-oxidizing marine archaeon. Nature (2005) 9.83
Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria. Nature (2009) 4.84
Cultivation of a thermophilic ammonia oxidizing archaeon synthesizing crenarchaeol. Environ Microbiol (2008) 3.65
Broad-host-range cre-lox system for antibiotic marker recycling in gram-negative bacteria. Biotechniques (2002) 3.48
High-resolution metagenomics targets specific functional types in complex microbial communities. Nat Biotechnol (2008) 2.99
Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota. Trends Microbiol (2010) 2.84
Methylotrophy in Methylobacterium extorquens AM1 from a genomic point of view. J Bacteriol (2003) 2.81
DNA microarray detection of nitrifying bacterial 16S rRNA in wastewater treatment plant samples. Water Res (2005) 2.66
The expanding world of methylotrophic metabolism. Annu Rev Microbiol (2009) 2.46
Metabolic modeling of a mutualistic microbial community. Mol Syst Biol (2007) 2.40
Rapid evolution of stability and productivity at the origin of a microbial mutualism. Proc Natl Acad Sci U S A (2010) 2.25
Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. PLoS One (2009) 1.94
Stoichiometric model for evaluating the metabolic capabilities of the facultative methylotroph Methylobacterium extorquens AM1, with application to reconstruction of C(3) and C(4) metabolism. Biotechnol Bioeng (2002) 1.92
Short fimbriae of Porphyromonas gingivalis and their role in coadhesion with Streptococcus gordonii. Infect Immun (2005) 1.91
Molecular characterization of sulfate-reducing bacteria in the Guaymas Basin. Appl Environ Microbiol (2003) 1.84
Formaldehyde-detoxifying role of the tetrahydromethanopterin-linked pathway in Methylobacterium extorquens AM1. J Bacteriol (2003) 1.78
Loss of diversity of ammonia-oxidizing bacteria correlates with increasing salinity in an estuary system. Environ Microbiol (2005) 1.77
An improved method for counting bacteria from sediments and turbid environments by epifluorescence microscopy. Environ Microbiol (2005) 1.75
Bacterial populations active in metabolism of C1 compounds in the sediment of Lake Washington, a freshwater lake. Appl Environ Microbiol (2005) 1.68
Glyoxylate regeneration pathway in the methylotroph Methylobacterium extorquens AM1. J Bacteriol (2002) 1.58
Disruption of the operon encoding Ehb hydrogenase limits anabolic CO2 assimilation in the archaeon Methanococcus maripaludis. J Bacteriol (2006) 1.58
A microwell array device capable of measuring single-cell oxygen consumption rates. Sens Actuators B Chem (2009) 1.57
Impact of prehybridization PCR amplification on microarray detection of nitrifying bacteria in wastewater treatment plant samples. Environ Microbiol (2006) 1.54
Synthesis of methylphosphonic acid by marine microbes: a source for methane in the aerobic ocean. Science (2012) 1.53
Fluorescence in situ hybridization of 16S rRNA gene clones (Clone-FISH) for probe validation and screening of clone libraries. Environ Microbiol (2002) 1.53
Nutrient availability as a mechanism for selection of antibiotic tolerant Pseudomonas aeruginosa within the CF airway. PLoS Pathog (2010) 1.50
Quantitative proteomics of the archaeon Methanococcus maripaludis validated by microarray analysis and real time PCR. Mol Cell Proteomics (2006) 1.49
Single-base-pair discrimination of terminal mismatches by using oligonucleotide microarrays and neural network analyses. Appl Environ Microbiol (2002) 1.48
Protein complexing in a methanogen suggests electron bifurcation and electron delivery from formate to heterodisulfide reductase. Proc Natl Acad Sci U S A (2010) 1.48
Novel methylotrophy genes of Methylobacterium extorquens AM1 identified by using transposon mutagenesis including a putative dihydromethanopterin reductase. J Bacteriol (2003) 1.48
Optimization of single-base-pair mismatch discrimination in oligonucleotide microarrays. Appl Environ Microbiol (2003) 1.48
Discrimination of shifts in a soil microbial community associated with TNT-contamination using a functional ANOVA of 16S rRNA hybridized to oligonucleotide microarrays. Environ Sci Technol (2006) 1.44
Genetics of the glutamate-mediated methylamine utilization pathway in the facultative methylotrophic beta-proteobacterium Methyloversatilis universalis FAM5. Mol Microbiol (2009) 1.43
MeaB is a component of the methylmalonyl-CoA mutase complex required for protection of the enzyme from inactivation. J Biol Chem (2004) 1.43
Implementation of microarrays for Methylobacterium extorquens AM1. OMICS (2007) 1.43
Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components. Proteomics (2005) 1.39
The electron transfer system of syntrophically grown Desulfovibrio vulgaris. J Bacteriol (2009) 1.35
Quantitative proteomics of intracellular Porphyromonas gingivalis. Proteomics (2007) 1.33
Functionally distinct communities of ammonia-oxidizing bacteria along an estuarine salinity gradient. Environ Microbiol (2007) 1.32
Recurring seasonal dynamics of microbial communities in stream habitats. Appl Environ Microbiol (2006) 1.32
Stochasticity, succession, and environmental perturbations in a fluidic ecosystem. Proc Natl Acad Sci U S A (2014) 1.31
A New Approach for Measuring Single-Cell Oxygen Consumption Rates. IEEE Trans Autom Sci Eng (2008) 1.31
Lateral gene transfer of dissimilatory (bi)sulfite reductase revisited. J Bacteriol (2005) 1.31
A novel class of microbial phosphocholine-specific phospholipases C. Mol Microbiol (2002) 1.30
Comparison of spectral counting and metabolic stable isotope labeling for use with quantitative microbial proteomics. Analyst (2006) 1.29
Direct profiling of environmental microbial populations by thermal dissociation analysis of native rRNAs hybridized to oligonucleotide microarrays. Appl Environ Microbiol (2003) 1.29
Proteomics of Porphyromonas gingivalis within a model oral microbial community. BMC Microbiol (2009) 1.28
Plants in the pink: cytokinin production by methylobacterium. J Bacteriol (2002) 1.28
Multiple formate dehydrogenase enzymes in the facultative methylotroph Methylobacterium extorquens AM1 are dispensable for growth on methanol. J Bacteriol (2004) 1.28
Flux analysis uncovers key role of functional redundancy in formaldehyde metabolism. PLoS Biol (2005) 1.27
Multiple formaldehyde oxidation/detoxification pathways in Burkholderia fungorum LB400. J Bacteriol (2004) 1.25
Development of an insertional expression vector system for Methylobacterium extorquens AM1 and generation of null mutants lacking mtdA and/or fch. Microbiology (2004) 1.25
Genome of Methylobacillus flagellatus, molecular basis for obligate methylotrophy, and polyphyletic origin of methylotrophy. J Bacteriol (2007) 1.25
Formate as the main branch point for methylotrophic metabolism in Methylobacterium extorquens AM1. J Bacteriol (2008) 1.24
Poly-beta-hydroxybutyrate biosynthesis in the facultative methylotroph methylobacterium extorquens AM1: identification and mutation of gap11, gap20, and phaR. J Bacteriol (2002) 1.23
Parallel characterization of anaerobic toluene- and ethylbenzene-degrading microbial consortia by PCR-denaturing gradient gel electrophoresis, RNA-DNA membrane hybridization, and DNA microarray technology. Appl Environ Microbiol (2002) 1.23
Complete genome sequences of six strains of the genus Methylobacterium. J Bacteriol (2012) 1.23
Fluorescence in situ hybridization-flow cytometry-cell sorting-based method for separation and enrichment of type I and type II methanotroph populations. Appl Environ Microbiol (2006) 1.22
Functional marker genes for identification of sulfate-reducing prokaryotes. Methods Enzymol (2005) 1.21
Abundance of ammonia-oxidizing archaea and bacteria along an estuarine salinity gradient in relation to potential nitrification rates. Appl Environ Microbiol (2009) 1.21
Differential quantitative proteomics of Porphyromonas gingivalis by linear ion trap mass spectrometry: non-label methods comparison, q-values and LOWESS curve fitting. Int J Mass Spectrom (2007) 1.20
Comprehensive proteomics of Methylobacterium extorquens AM1 metabolism under single carbon and nonmethylotrophic conditions. Proteomics (2008) 1.20
Differential photoinhibition of bacterial and archaeal ammonia oxidation. FEMS Microbiol Lett (2011) 1.19
Estimation of methanotroph abundance in a freshwater lake sediment. Environ Microbiol (2002) 1.19
Genomes of three methylotrophs from a single niche reveal the genetic and metabolic divergence of the methylophilaceae. J Bacteriol (2011) 1.19
Transcription of all amoC copies is associated with recovery of Nitrosomonas europaea from ammonia starvation. J Bacteriol (2007) 1.18
Analysis of gene islands involved in methanopterin-linked C1 transfer reactions reveals new functions and provides evolutionary insights. J Bacteriol (2005) 1.18
Use of 16S rRNA, 23S rRNA, and gyrB gene sequence analysis to determine phylogenetic relationships of Bacillus cereus group microorganisms. J Clin Microbiol (2004) 1.18
Characterization of a novel methanol dehydrogenase in representatives of Burkholderiales: implications for environmental detection of methylotrophy and evidence for convergent evolution. J Bacteriol (2008) 1.18
Methylotenera mobilis gen. nov., sp. nov., an obligately methylamine-utilizing bacterium within the family Methylophilaceae. Int J Syst Evol Microbiol (2006) 1.17
How sulphate-reducing microorganisms cope with stress: lessons from systems biology. Nat Rev Microbiol (2011) 1.16
Reconstruction of C(3) and C(4) metabolism in Methylobacterium extorquens AM1 using transposon mutagenesis. Microbiology (2003) 1.16
Quantification of central metabolic fluxes in the facultative methylotroph methylobacterium extorquens AM1 using 13C-label tracing and mass spectrometry. Biotechnol Bioeng (2003) 1.15
A systems biology approach uncovers cellular strategies used by Methylobacterium extorquens AM1 during the switch from multi- to single-carbon growth. PLoS One (2010) 1.15
Linkage of high rates of sulfate reduction in Yellowstone hot springs to unique sequence types in the dissimilatory sulfate respiration pathway. Appl Environ Microbiol (2003) 1.15