Published in Appl Environ Microbiol on January 01, 2002
High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment. Microb Ecol (2007) 4.81
Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation. Appl Environ Microbiol (2006) 4.09
Oligonucleotide microarray for 16S rRNA gene-based detection of all recognized lineages of sulfate-reducing prokaryotes in the environment. Appl Environ Microbiol (2002) 3.26
Design of LNA probes that improve mismatch discrimination. Nucleic Acids Res (2006) 1.59
Optimization of single-base-pair mismatch discrimination in oligonucleotide microarrays. Appl Environ Microbiol (2003) 1.48
Tests of rRNA hybridization to microarrays suggest that hybridization characteristics of oligonucleotide probes for species discrimination cannot be predicted. Nucleic Acids Res (2006) 1.46
Seven novel probe systems for real-time PCR provide absolute single-base discrimination, higher signaling, and generic components. J Mol Diagn (2014) 1.44
Analysis of bacterial community composition by oligonucleotide fingerprinting of rRNA genes. Appl Environ Microbiol (2002) 1.41
Direct profiling of environmental microbial populations by thermal dissociation analysis of native rRNAs hybridized to oligonucleotide microarrays. Appl Environ Microbiol (2003) 1.29
On-chip non-equilibrium dissociation curves and dissociation rate constants as methods to assess specificity of oligonucleotide probes. Nucleic Acids Res (2006) 1.27
Parallel characterization of anaerobic toluene- and ethylbenzene-degrading microbial consortia by PCR-denaturing gradient gel electrophoresis, RNA-DNA membrane hybridization, and DNA microarray technology. Appl Environ Microbiol (2002) 1.23
Position dependent mismatch discrimination on DNA microarrays - experiments and model. BMC Bioinformatics (2008) 1.15
Sequence-specific cleavage of small-subunit (SSU) rRNA with oligonucleotides and RNase H: a rapid and simple approach to SSU rRNA-based quantitative detection of microorganisms. Appl Environ Microbiol (2004) 1.09
POSaM: a fast, flexible, open-source, inkjet oligonucleotide synthesizer and microarrayer. Genome Biol (2004) 1.06
Revision of the nonequilibrium thermal dissociation and stringent washing approaches for identification of mixed nucleic acid targets by microarrays. Nucleic Acids Res (2007) 1.05
Application of COMPOCHIP microarray to investigate the bacterial communities of different composts. Microb Ecol (2008) 1.04
Influence of dangling ends and surface-proximal tails of targets on probe-target duplex formation in 16S rRNA gene-based diagnostic arrays. Appl Environ Microbiol (2006) 0.98
Effects of target length on the hybridization efficiency and specificity of rRNA-based oligonucleotide microarrays. Appl Environ Microbiol (2006) 0.98
Unravelling microbial communities with DNA-microarrays: challenges and future directions. Microb Ecol (2007) 0.94
Isothermal discrimination of single-nucleotide polymorphisms via real-time kinetic desorption and label-free detection of DNA using silicon photonic microring resonator arrays. Anal Chem (2011) 0.92
In situ-synthesized virulence and marker gene biochip for detection of bacterial pathogens in water. Appl Environ Microbiol (2008) 0.90
Evaluation of gel-pad oligonucleotide microarray technology by using artificial neural networks. Appl Environ Microbiol (2005) 0.90
Emission characteristics of fluorescent labels with respect to temperature changes and subsequent effects on DNA microchip studies. Appl Environ Microbiol (2005) 0.85
Development and applications of microbial ecogenomic indicators for monitoring water quality: report of a workshop assessing the state of the science, research needs and future directions. Environ Monit Assess (2006) 0.84
A nifH-based oligonucleotide microarray for functional diagnostics of nitrogen-fixing microorganisms. Microb Ecol (2006) 0.80
Technology development to explore the relationship between oral health and the oral microbial community. BMC Oral Health (2006) 0.79
Modeling formamide denaturation of probe-target hybrids for improved microarray probe design in microbial diagnostics. PLoS One (2012) 0.79
UV-vis spectroscopy and dynamic light scattering study of gold nanorods aggregation. Nucleic Acid Ther (2013) 0.75
Identification of non-specific hybridization using an empirical equation fitted to non-equilibrium dissociation curves. J Microbiol Methods (2012) 0.75
Basic local alignment search tool. J Mol Biol (1990) 659.07
Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science (1995) 88.48
The RDP-II (Ribosomal Database Project). Nucleic Acids Res (2001) 27.07
Use of phylogenetically based hybridization probes for studies of ruminal microbial ecology. Appl Environ Microbiol (1988) 19.10
Group-specific 16S rRNA hybridization probes to describe natural communities of methanogens. Appl Environ Microbiol (1994) 9.21
Nucleic acid reassociation in formamide. Biochemistry (1969) 8.77
Genome-wide expression profiling in Escherichia coli K-12. Nucleic Acids Res (1999) 7.20
Functional genomics: expression analysis of Escherichia coli growing on minimal and rich media. J Bacteriol (1999) 6.10
Quantification of methanogenic groups in anaerobic biological reactors by oligonucleotide probe hybridization. Appl Environ Microbiol (1994) 4.84
Phylogenetic probes for analyzing abundance and spatial organization of nitrifying bacteria. Appl Environ Microbiol (1996) 4.59
Coagulase-negative staphylococci: role as pathogens. Annu Rev Med (1999) 3.59
Artificial neural networks: fundamentals, computing, design, and application. J Microbiol Methods (2000) 3.59
DNA analysis and diagnostics on oligonucleotide microchips. Proc Natl Acad Sci U S A (1996) 3.13
Oligonucleotide microchips as genosensors for determinative and environmental studies in microbiology. Appl Environ Microbiol (1997) 2.83
Hybridization with synthetic oligonucleotides. Methods Enzymol (1979) 2.17
Optimization of an oligonucleotide microchip for microbial identification studies: a non-equilibrium dissociation approach. Environ Microbiol (2001) 1.79
Manual manufacturing of oligonucleotide, DNA, and protein microchips. Anal Biochem (1997) 1.66
Spreadsheet software for thermodynamic melting point prediction of oligonucleotide hybridization with and without mismatches. Biotechniques (1999) 1.59
Regioselective immobilization of short oligonucleotides to acrylic copolymer gels. Nucleic Acids Res (1996) 1.56
Immobilization of DNA in polyacrylamide gel for the manufacture of DNA and DNA-oligonucleotide microchips. Anal Biochem (1998) 1.44
Microchip arrays put DNA on the spot. Science (1998) 1.42
Portable system for microbial sample preparation and oligonucleotide microarray analysis. Appl Environ Microbiol (2001) 1.36
Escherichia coli O157:H7 restriction pattern recognition by artificial neural network. J Clin Microbiol (1995) 1.30
Rapid identification of species within the Mycobacterium tuberculosis complex by artificial neural network analysis of pyrolysis mass spectra. J Med Microbiol (1994) 1.25
High rate of aerobic nitrification and denitrification by Nitrosomonas eutropha grown in a fermentor with complete biomass retention in the presence of gaseous NO2 or NO. Arch Microbiol (1998) 1.24
Spatial and Temporal Assessment of Diazotroph Assemblage Composition in Vegetated Salt Marsh Sediments Using Denaturing Gradient Gel Electrophoresis Analysis. Microb Ecol (1999) 1.22
An assessment of neural network and statistical approaches for prediction of E. coli promoter sites. Nucleic Acids Res (1992) 1.21
Genomic interspecies microarray hybridization: rapid discovery of three thousand genes in the maize endophyte, Klebsiella pneumoniae 342, by microarray hybridization with Escherichia coli K-12 open reading frames. Appl Environ Microbiol (2001) 1.15
Natural Microbial Community Compositions Compared by a Back-Propagating Neural Network and Cluster Analysis of 5S rRNA. Appl Environ Microbiol (1997) 1.15
A general procedure for locating and analyzing protein-binding sequence motifs in nucleic acids. Proc Natl Acad Sci U S A (1998) 0.98
Application of neural computing methods for interpreting phospholipid fatty acid profiles of natural microbial communities. Appl Environ Microbiol (2000) 0.95
Comparison of statistical methods for identification of Streptococcus thermophilus, Enterococcus faecalis, and Enterococcus faecium from randomly amplified polymorphic DNA patterns. Appl Environ Microbiol (2001) 0.93
Neural computing in microbiology. J Microbiol Methods (2000) 0.85
Isolation of an autotrophic ammonia-oxidizing marine archaeon. Nature (2005) 9.83
Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria. Nature (2009) 4.84
Cultivation of a thermophilic ammonia oxidizing archaeon synthesizing crenarchaeol. Environ Microbiol (2008) 3.65
Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota. Trends Microbiol (2010) 2.84
Improving handoffs in the emergency department. Ann Emerg Med (2009) 2.84
Assessment of Medicare's imaging efficiency measure for emergency department patients with atraumatic headache. Ann Emerg Med (2012) 2.71
DNA microarray detection of nitrifying bacterial 16S rRNA in wastewater treatment plant samples. Water Res (2005) 2.66
Metabolic modeling of a mutualistic microbial community. Mol Syst Biol (2007) 2.40
Rapid evolution of stability and productivity at the origin of a microbial mutualism. Proc Natl Acad Sci U S A (2010) 2.25
Oral appliance therapy reduces blood pressure in obstructive sleep apnea: a randomized, controlled trial. Sleep (2004) 2.16
Molecular characterization of sulfate-reducing bacteria in the Guaymas Basin. Appl Environ Microbiol (2003) 1.84
Normal human monocytes exposed to glioma cells acquire myeloid-derived suppressor cell-like properties. Neuro Oncol (2009) 1.80
Loss of diversity of ammonia-oxidizing bacteria correlates with increasing salinity in an estuary system. Environ Microbiol (2005) 1.77
An in vivo patient-derived model of endogenous IDH1-mutant glioma. Neuro Oncol (2011) 1.70
Beyond Affymetrix arrays: expanding the set of known hybridization isotherms and observing pre-wash signal intensities. Nucleic Acids Res (2009) 1.54
Impact of prehybridization PCR amplification on microarray detection of nitrifying bacteria in wastewater treatment plant samples. Environ Microbiol (2006) 1.54
Synthesis of methylphosphonic acid by marine microbes: a source for methane in the aerobic ocean. Science (2012) 1.53
Fluorescence in situ hybridization of 16S rRNA gene clones (Clone-FISH) for probe validation and screening of clone libraries. Environ Microbiol (2002) 1.53
Body composition and energy metabolism in chronic renal insufficiency. Am J Kidney Dis (2002) 1.51
Nutrient availability as a mechanism for selection of antibiotic tolerant Pseudomonas aeruginosa within the CF airway. PLoS Pathog (2010) 1.50
Reduced heart rate variability correlates with insulin resistance but not with measures of obesity in population undergoing laparoscopic Roux-en-Y gastric bypass. Surg Obes Relat Dis (2009) 1.48
Optimization of single-base-pair mismatch discrimination in oligonucleotide microarrays. Appl Environ Microbiol (2003) 1.48
The effect of long-term control of reflux by fundoplication on aberrant deoxyribonucleic acid methylation in patients with Barrett esophagus. Ann Surg (2010) 1.46
Tests of rRNA hybridization to microarrays suggest that hybridization characteristics of oligonucleotide probes for species discrimination cannot be predicted. Nucleic Acids Res (2006) 1.46
Should we quantify insulin resistance in patients with renal disease? Nephrology (Carlton) (2005) 1.45
Discrimination of shifts in a soil microbial community associated with TNT-contamination using a functional ANOVA of 16S rRNA hybridized to oligonucleotide microarrays. Environ Sci Technol (2006) 1.44
Inaccuracies in estimated glomerular filtration rate in one Australian renal centre. Nephrology (Carlton) (2011) 1.40
Feasibility of laparoscopic adrenalectomy for large adrenal masses. Surg Laparosc Endosc Percutan Tech (2003) 1.40
Procedural safety in emergency care: a conceptual model and recommendations. Jt Comm J Qual Patient Saf (2012) 1.38
The electron transfer system of syntrophically grown Desulfovibrio vulgaris. J Bacteriol (2009) 1.35
Expert panel on weight loss surgery: executive report update. Obesity (Silver Spring) (2009) 1.33
Predictors of weight status following laparoscopic gastric bypass. Obes Surg (2006) 1.33
Functionally distinct communities of ammonia-oxidizing bacteria along an estuarine salinity gradient. Environ Microbiol (2007) 1.32
Cardiovascular consequences of cortisol excess. Vasc Health Risk Manag (2005) 1.32
Recurring seasonal dynamics of microbial communities in stream habitats. Appl Environ Microbiol (2006) 1.32
Stochasticity, succession, and environmental perturbations in a fluidic ecosystem. Proc Natl Acad Sci U S A (2014) 1.31
Lateral gene transfer of dissimilatory (bi)sulfite reductase revisited. J Bacteriol (2005) 1.31
Direct profiling of environmental microbial populations by thermal dissociation analysis of native rRNAs hybridized to oligonucleotide microarrays. Appl Environ Microbiol (2003) 1.29
Advantages of mini-laparoscopic vs conventional laparoscopic cholecystectomy: results of a prospective randomized trial. Arch Surg (2005) 1.27
Predictors of complication and suboptimal weight loss after laparoscopic Roux-en-Y gastric bypass: a series of 188 patients. Arch Surg (2003) 1.26
Physico-chemical foundations underpinning microarray and next-generation sequencing experiments. Nucleic Acids Res (2013) 1.25
Elevated atmospheric CO2 alters soil microbial communities associated with trembling aspen (Populus tremuloides) roots. Microb Ecol (2005) 1.24
Parallel characterization of anaerobic toluene- and ethylbenzene-degrading microbial consortia by PCR-denaturing gradient gel electrophoresis, RNA-DNA membrane hybridization, and DNA microarray technology. Appl Environ Microbiol (2002) 1.23
Oligonucleotide microarrays: widely applied--poorly understood. Brief Funct Genomic Proteomic (2007) 1.21
Functional marker genes for identification of sulfate-reducing prokaryotes. Methods Enzymol (2005) 1.21
Abundance of ammonia-oxidizing archaea and bacteria along an estuarine salinity gradient in relation to potential nitrification rates. Appl Environ Microbiol (2009) 1.21
Complications of bariatric surgery. Curr Opin Gastroenterol (2007) 1.20
Differential photoinhibition of bacterial and archaeal ammonia oxidation. FEMS Microbiol Lett (2011) 1.19
Transcription of all amoC copies is associated with recovery of Nitrosomonas europaea from ammonia starvation. J Bacteriol (2007) 1.18
Use of 16S rRNA, 23S rRNA, and gyrB gene sequence analysis to determine phylogenetic relationships of Bacillus cereus group microorganisms. J Clin Microbiol (2004) 1.18
Methylophilaceae link methanol oxidation to denitrification in freshwater lake sediment as suggested by stable isotope probing and pure culture analysis. Environ Microbiol Rep (2009) 1.17
How sulphate-reducing microorganisms cope with stress: lessons from systems biology. Nat Rev Microbiol (2011) 1.16
Linkage of high rates of sulfate reduction in Yellowstone hot springs to unique sequence types in the dissimilatory sulfate respiration pathway. Appl Environ Microbiol (2003) 1.15
Intact membrane lipids of "Candidatus Nitrosopumilus maritimus," a cultivated representative of the cosmopolitan mesophilic group I Crenarchaeota. Appl Environ Microbiol (2008) 1.15
Hydroxylamine as an intermediate in ammonia oxidation by globally abundant marine archaea. Proc Natl Acad Sci U S A (2012) 1.14
Small-bowel obstruction after laparoscopic Roux-en-Y gastric bypass surgery. J Comput Assist Tomogr (2009) 1.14
Geriatric trauma patients-are they receiving trauma center care? Acad Emerg Med (2003) 1.14
Nicotinic acid-induced insulin resistance is related to increased circulating fatty acids and fat oxidation but not muscle lipid content. Metabolism (2003) 1.13
Acidovorax-like symbionts in the nephridia of earthworms. Environ Microbiol (2003) 1.13
High abundance of ammonia-oxidizing Archaea in coastal waters, determined using a modified DNA extraction method. Appl Environ Microbiol (2010) 1.12
Shifts in microbial community composition following surface application of dredged river sediments. Microb Ecol (2008) 1.11
Contraception for women with epilepsy. Rev Neurol Dis (2009) 1.11
Response of Desulfovibrio vulgaris to alkaline stress. J Bacteriol (2007) 1.11
Verminephrobacter eiseniae gen. nov., sp. nov., a nephridial symbiont of the earthworm Eisenia foetida (Savigny). Int J Syst Evol Microbiol (2008) 1.09
Effect of aberrant p53 function on temozolomide sensitivity of glioma cell lines and brain tumor initiating cells from glioblastoma. J Neurooncol (2010) 1.09
Feasibility of laparoscopic splenectomy in stable blunt trauma: a case series. J Trauma (2004) 1.09
Cdv-based cell division and cell cycle organization in the thaumarchaeon Nitrosopumilus maritimus. Mol Microbiol (2011) 1.08
Wastewater treatment effluent reduces the abundance and diversity of benthic bacterial communities in urban and suburban rivers. Appl Environ Microbiol (2013) 1.08
Sensitivity to temozolomide in brain tumor initiating cells. Neuro Oncol (2010) 1.06
Ammonia oxidation kinetics and temperature sensitivity of a natural marine community dominated by Archaea. ISME J (2013) 1.06
Related assemblages of sulphate-reducing bacteria associated with ultradeep gold mines of South Africa and deep basalt aquifers of Washington State. Environ Microbiol (2003) 1.05
Hydrothermal vent gastropods from the same family (Provannidae) harbour epsilon- and gamma-proteobacterial endosymbionts. Environ Microbiol (2005) 1.05
Revision of the nonequilibrium thermal dissociation and stringent washing approaches for identification of mixed nucleic acid targets by microarrays. Nucleic Acids Res (2007) 1.05
Spatial and temporal variability in a stratified hypersaline microbial mat community. FEMS Microbiol Ecol (2009) 1.03
On-target JAK2/STAT3 inhibition slows disease progression in orthotopic xenografts of human glioblastoma brain tumor stem cells. Neuro Oncol (2012) 1.02
Use of laparoscopy in evaluation and treatment of penetrating and blunt abdominal injuries. Surg Innov (2008) 1.01
Up-regulation of adiponectin, its isoforms and receptors in end-stage kidney disease. Nephrol Dial Transplant (2006) 1.01
Mimicking the oxygen minimum zones: stimulating interaction of aerobic archaeal and anaerobic bacterial ammonia oxidizers in a laboratory-scale model system. Environ Microbiol (2012) 1.01
Benefits of laparoscopic peritoneal lavage for complicated sigmoid diverticulitis. Int J Colorectal Dis (2009) 1.00
Selective recruitment of bacteria during embryogenesis of an earthworm. ISME J (2008) 0.99
Biome-level biogeography of streambed microbiota. Appl Environ Microbiol (2008) 0.99
Hydrogen peroxide-induced oxidative stress responses in Desulfovibrio vulgaris Hildenborough. Environ Microbiol (2010) 0.97
Transmission of nephridial bacteria of the earthworm Eisenia fetida. Appl Environ Microbiol (2006) 0.96
Left ventricular pseudoaneurysm causing myocardial infarction and cerebrovascular accident. J Emerg Med (2005) 0.96
Variation among Desulfovibrio species in electron transfer systems used for syntrophic growth. J Bacteriol (2012) 0.95
Metabolic characterization of nondiabetic severely obese patients undergoing Roux-en-Y gastric bypass: preoperative classification predicts the effects of gastric bypass on insulin-glucose homeostasis. J Gastrointest Surg (2007) 0.94
Influence of algal community structure on denitrification rates in periphyton cultivated on artificial substrata. Microb Ecol (2007) 0.94
Recirculating flow accelerates DNA microarray hybridization in a microfluidic device. Lab Chip (2006) 0.93
Effects of material morphology on the phototoxicity of nano-TiO2 to bacteria. Environ Sci Technol (2013) 0.93
Functional responses of methanogenic archaea to syntrophic growth. ISME J (2012) 0.92