Pathogenic rare copy number variants in community-based schizophrenia suggest a potential role for clinical microarrays.

PubWeight™: 1.44‹?› | Rank: Top 5%

🔗 View Article (PMC 3889806)

Published in Hum Mol Genet on June 27, 2013

Authors

Gregory Costain1, Anath C Lionel, Daniele Merico, Pamela Forsythe, Kathryn Russell, Chelsea Lowther, Tracy Yuen, Janice Husted, Dimitri J Stavropoulos, Marsha Speevak, Eva W C Chow, Christian R Marshall, Stephen W Scherer, Anne S Bassett

Author Affiliations

1: Clinical Genetics Research Program, Centre for Addiction and Mental Health, Toronto, ON, Canada M5S 2S1.

Articles citing this

Copy number variable microRNAs in schizophrenia and their neurodevelopmental gene targets. Biol Psychiatry (2014) 1.46

Disruption of the ASTN2/TRIM32 locus at 9q33.1 is a risk factor in males for autism spectrum disorders, ADHD and other neurodevelopmental phenotypes. Hum Mol Genet (2013) 1.26

1q21.1 Microduplication expression in adults. Genet Med (2012) 1.25

CNV analysis in a large schizophrenia sample implicates deletions at 16p12.1 and SLC1A1 and duplications at 1p36.33 and CGNL1. Hum Mol Genet (2013) 1.14

Response to clozapine in a clinically identifiable subtype of schizophrenia. Br J Psychiatry (2015) 1.09

Evaluating a unique, specialist psychiatric genetic counseling clinic: uptake and impact. Clin Genet (2014) 1.06

Delineating the 15q13.3 microdeletion phenotype: a case series and comprehensive review of the literature. Genet Med (2014) 1.01

Proteomic and genomic evidence implicates the postsynaptic density in schizophrenia. Mol Psychiatry (2014) 0.98

Evaluating genetic counseling for individuals with schizophrenia in the molecular age. Schizophr Bull (2012) 0.96

A high-resolution copy-number variation resource for clinical and population genetics. Genet Med (2014) 0.95

CHD2 haploinsufficiency is associated with developmental delay, intellectual disability, epilepsy and neurobehavioural problems. J Neurodev Disord (2014) 0.92

Cryptic and complex chromosomal aberrations in early-onset neuropsychiatric disorders. Am J Hum Genet (2014) 0.90

Recent genetic findings in schizophrenia and their therapeutic relevance. J Psychopharmacol (2014) 0.88

High-resolution copy number variation analysis of schizophrenia in Japan. Mol Psychiatry (2016) 0.87

Prenatal genetic testing with chromosomal microarray analysis identifies major risk variants for schizophrenia and other later-onset disorders. Am J Psychiatry (2013) 0.86

Whole-Genome Sequencing Suggests Schizophrenia Risk Mechanisms in Humans with 22q11.2 Deletion Syndrome. G3 (Bethesda) (2015) 0.85

The implications of the shared genetics of psychiatric disorders. Nat Med (2016) 0.83

MicroRNA Dysregulation, Gene Networks, and Risk for Schizophrenia in 22q11.2 Deletion Syndrome. Front Neurol (2014) 0.82

A recurrent deletion on chromosome 2q13 is associated with developmental delay and mild facial dysmorphisms. Mol Cytogenet (2015) 0.82

Adult neuropsychiatric expression and familial segregation of 2q13 duplications. Am J Med Genet B Neuropsychiatr Genet (2014) 0.80

The 3q29 deletion confers >40-fold increase in risk for schizophrenia. Mol Psychiatry (2015) 0.79

Recurrent Rare Genomic Copy Number Variants and Bicuspid Aortic Valve Are Enriched in Early Onset Thoracic Aortic Aneurysms and Dissections. PLoS One (2016) 0.78

Parental Origin of Interstitial Duplications at 15q11.2-q13.3 in Schizophrenia and Neurodevelopmental Disorders. PLoS Genet (2016) 0.77

Individualizing recurrence risks for severe mental illness: epidemiologic and molecular genetic approaches. Schizophr Bull (2013) 0.76

Chromosomal microarray testing in adults with intellectual disability presenting with comorbid psychiatric disorders. Eur J Hum Genet (2016) 0.75

Integrative approach for inference of gene regulatory networks using lasso-based random featuring and application to psychiatric disorders. BMC Med Genomics (2016) 0.75

CNV analysis in Chinese children of mental retardation highlights a sex differentiation in parental contribution to de novo and inherited mutational burdens. Sci Rep (2016) 0.75

Characterization of a Novel Mutation in SLC1A1 Associated with Schizophrenia. Mol Neuropsychiatry (2015) 0.75

A pilot study on commonality and specificity of copy number variants in schizophrenia and bipolar disorder. Transl Psychiatry (2016) 0.75

Reversing chromatin accessibility differences that distinguish homologous mitotic metaphase chromosomes. Mol Cytogenet (2015) 0.75

Dissection of partial 21q monosomy in different phenotypes: clinical and molecular characterization of five cases and review of the literature. Mol Cytogenet (2016) 0.75

Evidence for the multiple hits genetic theory for inherited language impairment: a case study. Front Genet (2015) 0.75

Discovery of a potentially deleterious variant in TMEM87B in a patient with a hemizygous 2q13 microdeletion suggests a recessive condition characterized by congenital heart disease and restrictive cardiomyopathy. Cold Spring Harb Mol Case Stud (2016) 0.75

The importance of copy number variation in congenital heart disease. NPJ Genom Med (2016) 0.75

Genomic Disorders in Psychiatry-What Does the Clinician Need to Know? Curr Psychiatry Rep (2017) 0.75

Articles cited by this

PLINK: a tool set for whole-genome association and population-based linkage analyses. Am J Hum Genet (2007) 209.92

Are rare variants responsible for susceptibility to complex diseases? Am J Hum Genet (2001) 22.46

The BCL-2 protein family: opposing activities that mediate cell death. Nat Rev Mol Cell Biol (2008) 20.89

Rare structural variants disrupt multiple genes in neurodevelopmental pathways in schizophrenia. Science (2008) 20.68

Rare chromosomal deletions and duplications increase risk of schizophrenia. Nature (2008) 20.31

Integrated genotype calling and association analysis of SNPs, common copy number polymorphisms and rare CNVs. Nat Genet (2008) 15.89

Structural variation of chromosomes in autism spectrum disorder. Am J Hum Genet (2008) 15.51

Functional impact of global rare copy number variation in autism spectrum disorders. Nature (2010) 14.66

Consensus statement: chromosomal microarray is a first-tier clinical diagnostic test for individuals with developmental disabilities or congenital anomalies. Am J Hum Genet (2010) 13.70

Strong association of de novo copy number mutations with sporadic schizophrenia. Nat Genet (2008) 10.19

A copy number variation morbidity map of developmental delay. Nat Genet (2011) 9.58

Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions. PLoS Genet (2009) 8.39

Schizophrenia: a common disease caused by multiple rare alleles. Br J Psychiatry (2007) 7.00

Copy-number variations associated with neuropsychiatric conditions. Nature (2008) 6.78

Enrichment map: a network-based method for gene-set enrichment visualization and interpretation. PLoS One (2010) 6.61

Challenges and standards in integrating surveys of structural variation. Nat Genet (2007) 6.05

Etiological heterogeneity in autism spectrum disorders: more than 100 genetic and genomic disorders and still counting. Brain Res (2010) 5.50

Functional and evolutionary insights into human brain development through global transcriptome analysis. Neuron (2009) 5.46

De novo CNV analysis implicates specific abnormalities of postsynaptic signalling complexes in the pathogenesis of schizophrenia. Mol Psychiatry (2011) 4.91

Rethinking schizophrenia. Nature (2010) 4.85

Disruption of the neurexin 1 gene is associated with schizophrenia. Hum Mol Genet (2008) 4.78

Support for the involvement of large copy number variants in the pathogenesis of schizophrenia. Hum Mol Genet (2009) 4.52

Copy number variants in schizophrenia: confirmation of five previous findings and new evidence for 3q29 microdeletions and VIPR2 duplications. Am J Psychiatry (2011) 4.29

De novo gene mutations highlight patterns of genetic and neural complexity in schizophrenia. Nat Genet (2012) 3.49

Comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants. Nat Biotechnol (2011) 3.25

American College of Medical Genetics standards and guidelines for interpretation and reporting of postnatal constitutional copy number variants. Genet Med (2011) 3.22

Clinical genetic testing for patients with autism spectrum disorders. Pediatrics (2010) 2.87

Copy number variations and risk for schizophrenia in 22q11.2 deletion syndrome. Hum Mol Genet (2008) 2.76

Accurately assessing the risk of schizophrenia conferred by rare copy-number variation affecting genes with brain function. PLoS Genet (2010) 2.68

Recurrent CNVs disrupt three candidate genes in schizophrenia patients. Am J Hum Genet (2008) 2.61

Practical guidelines for managing patients with 22q11.2 deletion syndrome. J Pediatr (2011) 2.57

Rare copy number variation discovery and cross-disorder comparisons identify risk genes for ADHD. Sci Transl Med (2011) 2.29

Diagnostic shifts during the decade following first admission for psychosis. Am J Psychiatry (2011) 2.24

Inference of unexpected genetic relatedness among individuals in HapMap Phase III. Am J Hum Genet (2010) 2.16

Absence of a paternally inherited FOXP2 gene in developmental verbal dyspraxia. Am J Hum Genet (2006) 2.14

Copy number variations in schizophrenia: critical review and new perspectives on concepts of genetics and disease. Am J Psychiatry (2010) 1.95

Ontario familial colon cancer registry: methods and first-year response rates. Chronic Dis Can (2000) 1.55

High-resolution mapping of genotype-phenotype relationships in cri du chat syndrome using array comparative genomic hybridization. Am J Hum Genet (2005) 1.51

Exome sequencing followed by large-scale genotyping suggests a limited role for moderately rare risk factors of strong effect in schizophrenia. Am J Hum Genet (2012) 1.47

Risk factors for autism: translating genomic discoveries into diagnostics. Hum Genet (2011) 1.46

Rare copy number variations in adults with tetralogy of Fallot implicate novel risk gene pathways. PLoS Genet (2012) 1.44

Premature death in adults with 22q11.2 deletion syndrome. J Med Genet (2009) 1.42

Expanding the range of ZNF804A variants conferring risk of psychosis. Mol Psychiatry (2010) 1.41

Clinically detectable copy number variations in a Canadian catchment population of schizophrenia. J Psychiatr Res (2010) 1.30

What is a meaningful result? Disclosing the results of genomic research in autism to research participants. Eur J Hum Genet (2010) 1.26

1q21.1 Microduplication expression in adults. Genet Med (2012) 1.25

Copy number variants for schizophrenia and related psychotic disorders in Oceanic Palau: risk and transmission in extended pedigrees. Biol Psychiatry (2011) 1.25

Copy number variants of schizophrenia susceptibility loci are associated with a spectrum of speech and developmental delays and behavior problems. Genet Med (2011) 1.22

Schizophrenia in an adult with 6p25 deletion syndrome. Am J Med Genet A (2006) 1.16

Chromosomal microarray impacts clinical management. Clin Genet (2013) 1.13

Sex differences in reproductive fitness contribute to preferential maternal transmission of 22q11.2 deletions. J Med Genet (2011) 1.13

Extracardiac features predicting 22q11.2 deletion syndrome in adult congenital heart disease. Int J Cardiol (2008) 1.12

Rare exonic deletions implicate the synaptic organizer Gephyrin (GPHN) in risk for autism, schizophrenia and seizures. Hum Mol Genet (2013) 1.11

Evaluating genetic counseling for family members of individuals with schizophrenia in the molecular age. Schizophr Bull (2012) 1.08

Expression of autism spectrum and schizophrenia in patients with a 22q11.2 deletion. Schizophr Res (2012) 1.08

Clinical applications of schizophrenia genetics: genetic diagnosis, risk, and counseling in the molecular era. Appl Clin Genet (2012) 1.07

Caregiver and adult patient perspectives on the importance of a diagnosis of 22q11.2 deletion syndrome. J Intellect Disabil Res (2011) 1.01

Recurrent deletions and reciprocal duplications of 10q11.21q11.23 including CHAT and SLC18A3 are likely mediated by complex low-copy repeats. Hum Mutat (2011) 1.01

A novel microdeletion syndrome at 3q13.31 characterised by developmental delay, postnatal overgrowth, hypoplastic male genitals, and characteristic facial features. J Med Genet (2011) 1.00

Evaluating genetic counseling for individuals with schizophrenia in the molecular age. Schizophr Bull (2012) 0.96

High frequency of known copy number abnormalities and maternal duplication 15q11-q13 in patients with combined schizophrenia and epilepsy. BMC Med Genet (2011) 0.95

The ever-evolving concept of clinical significance and the potential for sins of omission in genetic research. Am J Bioeth (2012) 0.95

A recurrent 1.71 Mb genomic imbalance at 2q13 increases the risk of developmental delay and dysmorphism. Clin Genet (2011) 0.94

Parents' perspectives on participating in genetic research in autism. J Autism Dev Disord (2013) 0.91

TAM receptor signalling and demyelination. Neurosignals (2009) 0.87

Apc1 is required for maintenance of local brain organizers and dorsal midbrain survival. Dev Biol (2009) 0.85

Parental origin, DNA structure, and the schizophrenia spectrum. Am J Psychiatry (2011) 0.83

New Ontario familial breast cancer registry to facilitate genetic and epidemiologic studies. Can Fam Physician (1997) 0.80

Articles by these authors

Global variation in copy number in the human genome. Nature (2006) 57.50

Detection of large-scale variation in the human genome. Nat Genet (2004) 49.18

The diploid genome sequence of an individual human. PLoS Biol (2007) 44.80

Origins and functional impact of copy number variation in the human genome. Nature (2009) 23.63

Relative impact of nucleotide and copy number variation on gene expression phenotypes. Science (2007) 23.38

Structural variation in the human genome. Nat Rev Genet (2006) 21.40

Structural variation of chromosomes in autism spectrum disorder. Am J Hum Genet (2008) 15.51

Functional impact of global rare copy number variation in autism spectrum disorders. Nature (2010) 14.66

Mapping autism risk loci using genetic linkage and chromosomal rearrangements. Nat Genet (2007) 14.05

Consensus statement: chromosomal microarray is a first-tier clinical diagnostic test for individuals with developmental disabilities or congenital anomalies. Am J Hum Genet (2010) 13.70

Genome-wide association study of CNVs in 16,000 cases of eight common diseases and 3,000 shared controls. Nature (2010) 12.27

Prepublication data sharing. Nature (2009) 12.24

QuantiSNP: an Objective Bayes Hidden-Markov Model to detect and accurately map copy number variation using SNP genotyping data. Nucleic Acids Res (2007) 10.08

Copy number variation: new insights in genome diversity. Genome Res (2006) 8.66

Genetic relationship between five psychiatric disorders estimated from genome-wide SNPs. Nat Genet (2013) 8.02

Genome assembly comparison identifies structural variants in the human genome. Nat Genet (2006) 6.93

Copy-number variations associated with neuropsychiatric conditions. Nature (2008) 6.78

Genome scan meta-analysis of schizophrenia and bipolar disorder, part II: Schizophrenia. Am J Hum Genet (2003) 6.63

Genome-wide detection of human copy number variations using high-density DNA oligonucleotide arrays. Genome Res (2006) 5.97

Accurate and reliable high-throughput detection of copy number variation in the human genome. Genome Res (2006) 5.50

Severe expressive-language delay related to duplication of the Williams-Beuren locus. N Engl J Med (2005) 5.37

Synaptic, transcriptional and chromatin genes disrupted in autism. Nature (2014) 5.30

Disruption of a long-range cis-acting regulator for Shh causes preaxial polydactyly. Proc Natl Acad Sci U S A (2002) 5.18

Contribution of SHANK3 mutations to autism spectrum disorder. Am J Hum Genet (2007) 5.04

Structural variants: changing the landscape of chromosomes and design of disease studies. Hum Mol Genet (2006) 4.60

Multiple recurrent genetic events converge on control of histone lysine methylation in medulloblastoma. Nat Genet (2009) 4.52

The Database of Genomic Variants: a curated collection of structural variation in the human genome. Nucleic Acids Res (2013) 4.42

Genome-wide detection of segmental duplications and potential assembly errors in the human genome sequence. Genome Biol (2003) 4.32

Subgroup-specific structural variation across 1,000 medulloblastoma genomes. Nature (2012) 4.13

Public data archives for genomic structural variation. Nat Genet (2010) 3.92

Copy-number variation in control population cohorts. Hum Mol Genet (2007) 3.88

Mutations in SUFU predispose to medulloblastoma. Nat Genet (2002) 3.78

Mutations in the SHANK2 synaptic scaffolding gene in autism spectrum disorder and mental retardation. Nat Genet (2010) 3.73

Hotspots for copy number variation in chimpanzees and humans. Proc Natl Acad Sci U S A (2006) 3.68

Discovery of common Asian copy number variants using integrated high-resolution array CGH and massively parallel DNA sequencing. Nat Genet (2010) 3.49

A genome-wide scan for common alleles affecting risk for autism. Hum Mol Genet (2010) 3.42

Comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants. Nat Biotechnol (2011) 3.25

Clinical features of 78 adults with 22q11 Deletion Syndrome. Am J Med Genet A (2005) 3.13

Identifying signatures of natural selection in Tibetan and Andean populations using dense genome scan data. PLoS Genet (2010) 3.11

The schizophrenia phenotype in 22q11 deletion syndrome. Am J Psychiatry (2003) 3.04

Clonal selection drives genetic divergence of metastatic medulloblastoma. Nature (2012) 2.96

Germ-line DNA copy number variation frequencies in a large North American population. Hum Genet (2007) 2.94

Genetic architecture in autism spectrum disorder. Curr Opin Genet Dev (2012) 2.86

Arrhythmogenic right ventricular cardiomyopathy type 5 is a fully penetrant, lethal arrhythmic disorder caused by a missense mutation in the TMEM43 gene. Am J Hum Genet (2008) 2.84

Towards a comprehensive structural variation map of an individual human genome. Genome Biol (2010) 2.79

Copy number variations and risk for schizophrenia in 22q11.2 deletion syndrome. Hum Mol Genet (2008) 2.76

Deletion 17q12 is a recurrent copy number variant that confers high risk of autism and schizophrenia. Am J Hum Genet (2010) 2.70

Genetic and functional analyses of SHANK2 mutations suggest a multiple hit model of autism spectrum disorders. PLoS Genet (2012) 2.65

A role for common fragile site induction in amplification of human oncogenes. Cancer Cell (2002) 2.63

Mirror extreme BMI phenotypes associated with gene dosage at the chromosome 16p11.2 locus. Nature (2011) 2.59

Genome-wide analysis of copy number variants in attention deficit hyperactivity disorder: the role of rare variants and duplications at 15q13.3. Am J Psychiatry (2012) 2.48

Detection of clinically relevant genetic variants in autism spectrum disorder by whole-genome sequencing. Am J Hum Genet (2013) 2.47

Individual common variants exert weak effects on the risk for autism spectrum disorderspi. Hum Mol Genet (2012) 2.46

Chromosomal regions containing high-density and ambiguously mapped putative single nucleotide polymorphisms (SNPs) correlate with segmental duplications in the human genome. Hum Mol Genet (2002) 2.34

Rare copy number variation discovery and cross-disorder comparisons identify risk genes for ADHD. Sci Transl Med (2011) 2.29

Phenotypic spectrum associated with de novo and inherited deletions and duplications at 16p11.2 in individuals ascertained for diagnosis of autism spectrum disorder. J Med Genet (2009) 2.27

Excessive genomic DNA copy number variation in the Li-Fraumeni cancer predisposition syndrome. Proc Natl Acad Sci U S A (2008) 2.22

Genetic analysis of patients with the Saethre-Chotzen phenotype. Am J Med Genet (2002) 2.17

Psychiatric disorders from childhood to adulthood in 22q11.2 deletion syndrome: results from the International Consortium on Brain and Behavior in 22q11.2 Deletion Syndrome. Am J Psychiatry (2014) 2.15

Absence of a paternally inherited FOXP2 gene in developmental verbal dyspraxia. Am J Hum Genet (2006) 2.14

Enrichment of segmental duplications in regions of breaks of synteny between the human and mouse genomes suggest their involvement in evolutionary rearrangements. Hum Mol Genet (2003) 2.07

Discovery of human inversion polymorphisms by comparative analysis of human and chimpanzee DNA sequence assemblies. PLoS Genet (2005) 2.05

PhenoTips: patient phenotyping software for clinical and research use. Hum Mutat (2013) 2.04

A method for accurate detection of genomic microdeletions using real-time quantitative PCR. BMC Genomics (2005) 2.04

Clinical and genetic epidemiology of Bardet-Biedl syndrome in Newfoundland: a 22-year prospective, population-based, cohort study. Am J Med Genet A (2005) 2.03

Schizophrenia and 22q11.2 deletion syndrome. Curr Psychiatry Rep (2008) 2.02

The clinical context of copy number variation in the human genome. Expert Rev Mol Med (2010) 2.00

Mutations in NHLRC1 cause progressive myoclonus epilepsy. Nat Genet (2003) 2.00

Copy number variations in schizophrenia: critical review and new perspectives on concepts of genetics and disease. Am J Psychiatry (2010) 1.95