Published in BMC Bioinformatics on May 09, 2013
A class-information-based penalized matrix decomposition for identifying plants core genes responding to abiotic stresses. PLoS One (2014) 0.82
A P-Norm Robust Feature Extraction Method for Identifying Differentially Expressed Genes. PLoS One (2015) 0.78
Disentangling multidimensional spatio-temporal data into their common and aberrant responses. PLoS One (2015) 0.75
Gene Feature Extraction Based on Nonnegative Dual Graph Regularized Latent Low-Rank Representation. Biomed Res Int (2017) 0.75
Consistent metagenomic biomarker detection via robust PCA. Biol Direct (2017) 0.75
Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays. Proc Natl Acad Sci U S A (1999) 35.16
GO::TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes. Bioinformatics (2004) 20.23
AmiGO: online access to ontology and annotation data. Bioinformatics (2008) 10.77
A penalized matrix decomposition, with applications to sparse principal components and canonical correlation analysis. Biostatistics (2009) 9.40
The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses. Plant J (2007) 8.09
GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function. Genome Biol (2008) 5.94
NASCArrays: a repository for microarray data generated by NASC's transcriptomics service. Nucleic Acids Res (2004) 5.82
Network component analysis: reconstruction of regulatory signals in biological systems. Proc Natl Acad Sci U S A (2003) 5.64
ConceptGen: a gene set enrichment and gene set relation mapping tool. Bioinformatics (2009) 2.11
Independent component analysis-based penalized discriminant method for tumor classification using gene expression data. Bioinformatics (2006) 1.79
Integration of cytokine and heterologous receptor signaling pathways. Nat Immunol (2009) 1.36
Probabilistic principal component analysis for metabolomic data. BMC Bioinformatics (2010) 1.34
Tumor clustering using nonnegative matrix factorization with gene selection. IEEE Trans Inf Technol Biomed (2009) 1.23
Multi-way clustering of microarray data using probabilistic sparse matrix factorization. Bioinformatics (2005) 1.18
Super-sparse principal component analyses for high-throughput genomic data. BMC Bioinformatics (2010) 1.16
Microfluidic DNA microarray analysis: a review. Anal Chim Acta (2010) 0.96
Extracting plants core genes responding to abiotic stresses by penalized matrix decomposition. Comput Biol Med (2012) 0.90
Inferring protein-protein interacting sites using residue conservation and evolutionary information. Protein Pept Lett (2006) 0.89
Characteristic gene selection via weighting principal components by singular values. PLoS One (2012) 0.87
The genome of the cucumber, Cucumis sativus L. Nat Genet (2009) 8.19
Treatment of ischemic brain damage by perturbing NMDA receptor- PSD-95 protein interactions. Science (2002) 3.98
A gate-latch-lock mechanism for hormone signalling by abscisic acid receptors. Nature (2009) 3.63
Identification of an intracellular receptor for lysophosphatidic acid (LPA): LPA is a transcellular PPARgamma agonist. Proc Natl Acad Sci U S A (2002) 3.01
Direct insulin and leptin action on pro-opiomelanocortin neurons is required for normal glucose homeostasis and fertility. Cell Metab (2010) 2.58
Molecular mimicry regulates ABA signaling by SnRK2 kinases and PP2C phosphatases. Science (2011) 2.52
The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions. Nat Genet (2012) 2.33
Protein pyrophosphorylation by inositol pyrophosphates is a posttranslational event. Proc Natl Acad Sci U S A (2007) 2.03
Feasibility of near-infrared spectroscopic tomography for intraoperative functional cerebral monitoring: a primate study. J Thorac Cardiovasc Surg (2014) 2.02
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics (2010) 1.88
Lysophosphatidic acid induces neointima formation through PPARgamma activation. J Exp Med (2004) 1.86
Identification and mechanism of ABA receptor antagonism. Nat Struct Mol Biol (2010) 1.83
Independent component analysis-based penalized discriminant method for tumor classification using gene expression data. Bioinformatics (2006) 1.79
Genome-wide association study in Chinese men identifies two new prostate cancer risk loci at 9q31.2 and 19q13.4. Nat Genet (2012) 1.78
Examination performance of graduate entry medical students compared with mainstream students. J R Soc Med (2009) 1.72
rpoB Gene mutations and molecular characterization of rifampin-resistant Mycobacterium tuberculosis isolates from Shandong Province, China. J Clin Microbiol (2006) 1.68
Identification of COUP-TFII orphan nuclear receptor as a retinoic acid-activated receptor. PLoS Biol (2008) 1.60
Rapid increase of serum neuron specific enolase level and tachyphylaxis of EGFR-tyrosine kinase inhibitor indicate small cell lung cancer transformation from EGFR positive lung adenocarcinoma? Lung Cancer (2013) 1.59
Identification of a lysosomal pathway that modulates glucocorticoid signaling and the inflammatory response. Sci Signal (2011) 1.58
Computation of octanol-water partition coefficients by guiding an additive model with knowledge. J Chem Inf Model (2007) 1.49
Elf5 inhibits TGF-β-driven epithelial-mesenchymal transition in prostate cancer by repressing SMAD3 activation. Prostate (2015) 1.47
Risk loci on chromosome 8q24 are associated with prostate cancer in northern Chinese men. J Urol (2011) 1.46
Impact of stone branch number on outcomes of percutaneous nephrolithotomy for treatment of staghorn calculi. J Endourol (2013) 1.45
Iodine-125 seed implantation and deferred transurethral resection of the prostate for patients with lower urinary tract symptoms and localized prostate cancer. Clin Genitourin Cancer (2013) 1.45
A comparison of posterior lumbar interbody fusion and transforaminal lumbar interbody fusion: a literature review and meta-analysis. BMC Musculoskelet Disord (2014) 1.43
Crystal structures of two phytohormone signal-transducing α/β hydrolases: karrikin-signaling KAI2 and strigolactone-signaling DWARF14. Cell Res (2013) 1.42
Decreased regional homogeneity in insula and cerebellum: a resting-state fMRI study in patients with major depression and subjects at high risk for major depression. Psychiatry Res (2010) 1.38
Serotonin 2C receptor activates a distinct population of arcuate pro-opiomelanocortin neurons via TRPC channels. Neuron (2011) 1.36
A consensus linkage map for molecular markers and quantitative trait loci associated with economically important traits in melon (Cucumis melo L.). BMC Plant Biol (2011) 1.33
Alpha-substituted phosphonate analogues of lysophosphatidic acid (LPA) selectively inhibit production and action of LPA. ChemMedChem (2007) 1.32
Data uncertainty in face recognition. IEEE Trans Cybern (2014) 1.32
A high resolution genetic map anchoring scaffolds of the sequenced watermelon genome. PLoS One (2012) 1.32
Characterization of transcriptome dynamics during watermelon fruit development: sequencing, assembly, annotation and gene expression profiles. BMC Genomics (2011) 1.28
Central insulin and leptin-mediated autonomic control of glucose homeostasis. Trends Endocrinol Metab (2011) 1.27
Role of the endothelial-to-mesenchymal transition in renal fibrosis of chronic kidney disease. Clin Exp Nephrol (2013) 1.25
The role of oxidative stress in the biological responses of lung epithelial cells to cigarette smoke. Biomarkers (2009) 1.24
Phosphatidyl inositol 3-kinase signaling in hypothalamic proopiomelanocortin neurons contributes to the regulation of glucose homeostasis. Endocrinology (2009) 1.23
Bmal1 and β-cell clock are required for adaptation to circadian disruption, and their loss of function leads to oxidative stress-induced β-cell failure in mice. Mol Cell Biol (2013) 1.22
Specificity protein 1-dependent p53-mediated suppression of human manganese superoxide dismutase gene expression. J Biol Chem (2006) 1.22
Near-infrared optical imaging of the breast with model-based reconstruction. Acad Radiol (2002) 1.19
A NADPH oxidase-dependent redox signaling pathway mediates the selective radiosensitization effect of parthenolide in prostate cancer cells. Cancer Res (2010) 1.18
Enantioselective responses to a phosphorothioate analogue of lysophosphatidic acid with LPA3 receptor-selective agonist activity. J Med Chem (2003) 1.18
Doubling the size of the glucocorticoid receptor ligand binding pocket by deacylcortivazol. Mol Cell Biol (2007) 1.18
Serotonin 2C receptors in pro-opiomelanocortin neurons regulate energy and glucose homeostasis. J Clin Invest (2013) 1.17
A hybrid model for short-term bacillary dysentery prediction in Yichang City, China. Jpn J Infect Dis (2010) 1.17
The combined effects of the 5-HTTLPR and 5-HTR1A genes modulates the relationship between negative life events and major depressive disorder in a Chinese population. J Affect Disord (2008) 1.17
The sexually dimorphic role of adipose and adipocyte estrogen receptors in modulating adipose tissue expansion, inflammation, and fibrosis. Mol Metab (2013) 1.17
Steroidogenic factor 1 directs programs regulating diet-induced thermogenesis and leptin action in the ventral medial hypothalamic nucleus. Proc Natl Acad Sci U S A (2011) 1.17
Lysophosphatidic acid production and action: validated targets in cancer? J Cell Biochem (2004) 1.17
A novel germline mutation in HOXB13 is associated with prostate cancer risk in Chinese men. Prostate (2012) 1.15
Primary mediastinal sarcoma: surgical outcomes of 21 cases. Interact Cardiovasc Thorac Surg (2013) 1.15
Class A scavenger receptor attenuates myocardial infarction-induced cardiomyocyte necrosis through suppressing M1 macrophage subset polarization. Basic Res Cardiol (2011) 1.14
Association of a single nucleotide polymorphism in growth differentiate factor 5 with congenital dysplasia of the hip: a case-control study. Arthritis Res Ther (2008) 1.13
Systematic review and meta-analysis of percutaneous nephrolithotomy for patients in the supine versus prone position. J Endourol (2010) 1.10
An ABA-mimicking ligand that reduces water loss and promotes drought resistance in plants. Cell Res (2013) 1.10
Prevalence of dementia and major dementia subtypes in the Chinese populations: a meta-analysis of dementia prevalence surveys, 1980-2010. J Clin Neurosci (2012) 1.09
Fluorescence lifetime tomography of turbid media based on an oxygen-sensitive dye. Opt Express (2002) 1.09
Planning analysis for locally advanced lung cancer: dosimetric and efficiency comparisons between intensity-modulated radiotherapy (IMRT), single-arc/partial-arc volumetric modulated arc therapy (SA/PA-VMAT). Radiat Oncol (2011) 1.08
The prevalence of mild cognitive impairment about elderly population in China: a meta-analysis. Int J Geriatr Psychiatry (2010) 1.08
Early or up-front radiotherapy improved survival of localized extranodal NK/T-cell lymphoma, nasal-type in the upper aerodigestive tract. Int J Radiat Oncol Biol Phys (2007) 1.08
Discovery and optimization of 3-(2-(Pyrazolo[1,5-a]pyrimidin-6-yl)ethynyl)benzamides as novel selective and orally bioavailable discoidin domain receptor 1 (DDR1) inhibitors. J Med Chem (2013) 1.08
Gambogic acid induces mitochondria-dependent apoptosis by modulation of Bcl-2 and Bax in mantle cell lymphoma JeKo-1 cells. Chin J Cancer Res (2013) 1.07
Lipid phosphate phosphatases regulate lysophosphatidic acid production and signaling in platelets: studies using chemical inhibitors of lipid phosphate phosphatase activity. J Biol Chem (2003) 1.07
Lack of association between the CALM1 core promoter polymorphism (-16C/T) and susceptibility to knee osteoarthritis in a Chinese Han population. BMC Med Genet (2008) 1.07
Formation of NOx from N2 and O2 in catalyst-pellet filled dielectric barrier discharges at atmospheric pressure. Chem Commun (Camb) (2003) 1.06
Manganese superoxide dismutase: beyond life and death. Amino Acids (2010) 1.06
Estrogens stimulate serotonin neurons to inhibit binge-like eating in mice. J Clin Invest (2014) 1.05
Diagnosis of bone metastases: a meta-analysis comparing ¹⁸FDG PET, CT, MRI and bone scintigraphy. Eur Radiol (2011) 1.05
Overexpressed microRNA-182 promotes proliferation and invasion in prostate cancer PC-3 cells by down-regulating N-myc downstream regulated gene 1 (NDRG1). PLoS One (2013) 1.04
Transcription regulation of human manganese superoxide dismutase gene. Methods Enzymol (2002) 1.04
A SUMOylation-dependent pathway regulates SIRT1 transcription and lung cancer metastasis. J Natl Cancer Inst (2013) 1.04
Salvage concurrent radio-chemotherapy for post-operative local recurrence of squamous-cell esophageal cancer. Radiat Oncol (2012) 1.04
Collagen alpha1(I) gene (COL1A1) is repressed by RFX family. J Biol Chem (2005) 1.03
Preeclampsia: 2-methoxyestradiol induces cytotrophoblast invasion and vascular development specifically under hypoxic conditions. Am J Pathol (2010) 1.03
Thickness-dependent interfacial Coulomb scattering in atomically thin field-effect transistors. Nano Lett (2013) 1.02
Glutamate mediates the function of melanocortin receptor 4 on Sim1 neurons in body weight regulation. Cell Metab (2013) 1.02
Mutations of glucocorticoid receptor differentially affect AF2 domain activity in a steroid-selective manner to alter the potency and efficacy of gene induction and repression. Biochemistry (2008) 1.02
Pharmacologic activation of PKM2 slows lung tumor xenograft growth. Mol Cancer Ther (2013) 1.02
Rural-to-urban migrants are at high risk of sexually transmitted and viral hepatitis infections in China: a systematic review and meta-analysis. BMC Infect Dis (2014) 1.02
Clinical significance of NUCB2 mRNA expression in prostate cancer. J Exp Clin Cancer Res (2013) 1.01
Prognostication of prostate cancer based on NUCB2 protein assessment: NUCB2 in prostate cancer. J Exp Clin Cancer Res (2013) 1.01
Identification and mechanism of 10-carbon fatty acid as modulating ligand of peroxisome proliferator-activated receptors. J Biol Chem (2011) 1.01
Effect of transport stress on respiratory disease, serum antioxidant status, and serum concentrations of lipid peroxidation biomarkers in beef cattle. Am J Vet Res (2004) 1.00
The orphan nuclear receptor TR4 is a vitamin A-activated nuclear receptor. J Biol Chem (2010) 1.00
Disrupted resting-state functional connectivity of the hippocampus in medication-naïve patients with major depressive disorder. J Affect Disord (2012) 1.00
Synthesis of migration-resistant hydroxyethoxy analogues of lysophosphatidic acid. Org Lett (2003) 0.99
Gammadelta T cells recognize tumor cells via CDR3delta region. Mol Immunol (2006) 0.99
Identification and characterization of a novel estrogenic ligand actinopolymorphol A. Biochem Pharmacol (2010) 0.99
A multicenter retrospective analysis of survival outcome following postoperative chemoradiotherapy in non-small-cell lung cancer patients with N2 nodal disease. Int J Radiat Oncol Biol Phys (2009) 0.98
Brahma-related gene 1 bridges epigenetic regulation of proinflammatory cytokine production to steatohepatitis in mice. Hepatology (2013) 0.98
Endostar, a recombined humanized endostatin, enhances the radioresponse for human nasopharyngeal carcinoma and human lung adenocarcinoma xenografts in mice. Cancer Sci (2009) 0.98
Using co-variations in the Hb signal to detect visual activation: a near infrared spectroscopic imaging study. Neuroimage (2009) 0.98
Steroid receptor coactivator-1 mediates estrogenic actions to prevent body weight gain in female mice. Endocrinology (2012) 0.98
PIASy mediates hypoxia-induced SIRT1 transcriptional repression and epithelial-to-mesenchymal transition in ovarian cancer cells. J Cell Sci (2013) 0.98
Pre-osteoblast infiltration and differentiation in highly porous apatite-coated PLLA electrospun scaffolds. Biomaterials (2010) 0.97
HDAC2 deacetylates class II transactivator and suppresses its activity in macrophages and smooth muscle cells. J Mol Cell Cardiol (2008) 0.97
Myocardin-related transcription factor A mediates OxLDL-induced endothelial injury. Circ Res (2011) 0.97
Joint Tensor Feature Analysis For Visual Object Recognition. IEEE Trans Cybern (2015) 0.96
Generation of systemic lupus erythematosus-specific induced pluripotent stem cells from urine. Rheumatol Int (2013) 0.96