Published in J Microbiol Methods on August 19, 2013
Characterization and comparison of bacterial communities in benign vocal fold lesions. Microbiome (2014) 0.88
Pinus flexilis and Picea engelmannii share a simple and consistent needle endophyte microbiota with a potential role in nitrogen fixation. Front Microbiol (2014) 0.87
The human laryngeal microbiome: effects of cigarette smoke and reflux. Sci Rep (2016) 0.82
Impact of Fishmeal Replacement in Diets for Gilthead Sea Bream (Sparus aurata) on the Gastrointestinal Microbiota Determined by Pyrosequencing the 16S rRNA Gene. PLoS One (2015) 0.81
Ammonia-oxidizing microbial communities in reactors with efficient nitrification at low-dissolved oxygen. Water Res (2014) 0.81
Plant-associated bacteria degrade defense chemicals and reduce their adverse effects on an insect defoliator. Oecologia (2014) 0.79
Considerations For Optimizing Microbiome Analysis Using a Marker Gene. Front Nutr (2016) 0.77
Host and Environmental Specificity in Bacterial Communities Associated to Two Highly Invasive Marine Species (Genus Asparagopsis). Front Microbiol (2016) 0.77
Microbiota Plays a Role in Oral Immune Priming in Tribolium castaneum. Front Microbiol (2016) 0.77
A comparison of sampling methods for examining the laryngeal microbiome. PLoS One (2017) 0.75
Microbial Communities of Lycaenid Butterflies Do Not Correlate with Larval Diet. Front Microbiol (2016) 0.75
Phylogenetic Evidence for Ancient and Persistent Environmental Symbiont Reacquisition in Largidae (Hemiptera: Heteroptera). Appl Environ Microbiol (2016) 0.75
Robust, high-productivity phototrophic carbon capture at high pH and alkalinity using natural microbial communities. Biotechnol Biofuels (2017) 0.75
Cellulose-Enriched Microbial Communities from Leaf-Cutter Ant (Atta colombica) Refuse Dumps Vary in Taxonomic Composition and Degradation Ability. PLoS One (2016) 0.75
Effects of contaminants of emerging concern on Megaselia scalaris (Lowe, Diptera: Phoridae) and its microbial community. Sci Rep (2017) 0.75
Basic local alignment search tool. J Mol Biol (1990) 659.07
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol (2011) 220.97
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol (2009) 77.55
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res (2008) 52.43
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res (2007) 35.65
Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex. Nat Methods (2008) 32.71
UCHIME improves sensitivity and speed of chimera detection. Bioinformatics (2011) 29.22
Review and re-analysis of domain-specific 16S primers. J Microbiol Methods (2003) 9.49
Diversity, stability and resilience of the human gut microbiota. Nature (2012) 9.09
UniFrac: an effective distance metric for microbial community comparison. ISME J (2010) 6.43
Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies. Nucleic Acids Res (2012) 6.21
Compilation of small ribosomal subunit RNA sequences. Nucleic Acids Res (1988) 5.85
Defining the core Arabidopsis thaliana root microbiome. Nature (2012) 5.56
Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota. Nature (2012) 4.42
Conservative fragments in bacterial 16S rRNA genes and primer design for 16S ribosomal DNA amplicons in metagenomic studies. PLoS One (2009) 4.11
Effect of primer mismatch, annealing temperature and PCR cycle number on 16S rRNA gene-targetting bacterial community analysis. FEMS Microbiol Ecol (2007) 3.34
The Diversity of Archaea and Bacteria in Association with the Roots of Zea mays L. Microb Ecol (2001) 3.19
Dynamic gut microbiome across life history of the malaria mosquito Anopheles gambiae in Kenya. PLoS One (2011) 2.64
Barcoded primers used in multiplex amplicon pyrosequencing bias amplification. Appl Environ Microbiol (2011) 2.52
Design of 16S rRNA gene primers for 454 pyrosequencing of the human foregut microbiome. World J Gastroenterol (2010) 2.41
The ecology of the phyllosphere: geographic and phylogenetic variability in the distribution of bacteria on tree leaves. Environ Microbiol (2010) 2.35
Target region selection is a critical determinant of community fingerprints generated by 16S pyrosequencing. PLoS One (2011) 2.04
Distinctive gut microbiota of honey bees assessed using deep sampling from individual worker bees. PLoS One (2012) 2.04
Assessment of bacterial diversity in the cattle tick Rhipicephalus (Boophilus) microplus through tag-encoded pyrosequencing. BMC Microbiol (2011) 2.02
Genomic approaches to studying the human microbiota. Nature (2012) 2.00
Distinct microbial communities within the endosphere and rhizosphere of Populus deltoides roots across contrasting soil types. Appl Environ Microbiol (2011) 1.96
Low-diversity bacterial community in the gut of the fruitfly Drosophila melanogaster. Environ Microbiol (2011) 1.94
Geographical and ecological stability of the symbiotic mid-gut microbiota in European firebugs, Pyrrhocoris apterus (Hemiptera, Pyrrhocoridae). Mol Ecol (2012) 1.83
Bacterial succession on the leaf surface: a novel system for studying successional dynamics. Microb Ecol (2009) 1.62
Bacterial communities associated with the leaves and the roots of Arabidopsis thaliana. PLoS One (2013) 1.57
Leaf microbiota in an agroecosystem: spatiotemporal variation in bacterial community composition on field-grown lettuce. ISME J (2012) 1.52
Deep sequencing reveals extensive variation in the gut microbiota of wild mosquitoes from Kenya. Mol Ecol (2012) 1.48
High-resolution analysis of gut environment and bacterial microbiota reveals functional compartmentation of the gut in wood-feeding higher termites (Nasutitermes spp.). Appl Environ Microbiol (2012) 1.43
Bacterial diversity analysis of Huanglongbing pathogen-infected citrus, using PhyloChip arrays and 16S rRNA gene clone library sequencing. Appl Environ Microbiol (2009) 1.41
Do diet and taxonomy influence insect gut bacterial communities? Mol Ecol (2012) 1.37
Endophytic bacterial diversity in rice (Oryza sativa L.) roots estimated by 16S rDNA sequence analysis. Microb Ecol (2007) 1.32
The carnivorous pale pitcher plant harbors diverse, distinct, and time-dependent bacterial communities. Appl Environ Microbiol (2010) 1.26
Uncovering symbiont-driven genetic diversity across North American pea aphids. Mol Ecol (2013) 1.22
Bacterial communities of disease vectors sampled across time, space, and species. ISME J (2009) 1.15
A cross-taxon analysis of insect-associated bacterial diversity. PLoS One (2013) 1.12
Unexpected diversity during community succession in the apple flower microbiome. MBio (2013) 1.11
Actinobacteria as essential symbionts in firebugs and cotton stainers (Hemiptera, Pyrrhocoridae). Environ Microbiol (2012) 1.10
Biodiversity of active and inactive bacteria in the gut flora of wood-feeding huhu beetle larvae (Prionoplus reticularis). Appl Environ Microbiol (2011) 1.08
Bacterial diversity in relation to secondary production and succession on surfaces of the kelp Laminaria hyperborea. ISME J (2012) 1.04
High-throughput sequencing of 16S rRNA gene amplicons: effects of extraction procedure, primer length and annealing temperature. PLoS One (2012) 1.04
Characterization of the dynamics of initial bacterial colonization of nonconserved forage in the bovine rumen. FEMS Microbiol Ecol (2007) 1.04
Application of a new PCR primer for terminal restriction fragment length polymorphism analysis of the bacterial communities in plant roots. J Microbiol Methods (2004) 1.02
Characterization of the Relative Abundance of the Citrus Pathogen Ca. Liberibacter Asiaticus in the Microbiome of Its Insect Vector, Diaphorina citri, using High Throughput 16S rRNA Sequencing. Open Microbiol J (2012) 1.01
Effects of PCR cycle number and DNA polymerase type on the 16S rRNA gene pyrosequencing analysis of bacterial communities. J Microbiol (2012) 0.98
Culture independent survey of the microbiota of the glassy-winged sharpshooter (Homalodisca vitripennis) using 454 pyrosequencing. Environ Entomol (2011) 0.97
A PCR-based toolbox for the culture-independent quantification of total bacterial abundances in plant environments. J Microbiol Methods (2010) 0.95
Composition and seasonal variation of Rhipicephalus turanicus and Rhipicephalus sanguineus bacterial communities. Appl Environ Microbiol (2012) 0.93
Pyrosequencing-based analysis of the microbiome associated with the horn fly, Haematobia irritans. PLoS One (2012) 0.90
Bacterial communities of two parthenogenetic aphid species cocolonizing two host plants across the Hawaiian Islands. Appl Environ Microbiol (2011) 0.89
Comparative analysis of microbial diversity in Longitarsus flea beetles (Coleoptera: Chrysomelidae). Genetica (2010) 0.88
Mycangia of ambrosia beetles host communities of bacteria. Microb Ecol (2012) 0.88
Identification and location of symbionts associated with potato psyllid (Bactericera cockerelli) lifestages. Environ Entomol (2012) 0.87
Bacterial protection of beetle-fungus mutualism. Science (2008) 3.69
The interdependence of mechanisms underlying climate-driven vegetation mortality. Trends Ecol Evol (2011) 2.67
Dentigerumycin: a bacterial mediator of an ant-fungus symbiosis. Nat Chem Biol (2009) 2.57
Census of the bacterial community of the gypsy moth larval midgut by using culturing and culture-independent methods. Appl Environ Microbiol (2004) 2.55
An insect herbivore microbiome with high plant biomass-degrading capacity. PLoS Genet (2010) 2.28
Rules of engagement: interspecies interactions that regulate microbial communities. Annu Rev Microbiol (2008) 2.22
The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle. PLoS Genet (2011) 2.16
Symbiotic nitrogen fixation in the fungus gardens of leaf-cutter ants. Science (2009) 2.15
Midgut bacteria required for Bacillus thuringiensis insecticidal activity. Proc Natl Acad Sci U S A (2006) 2.15
Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile). Proc Natl Acad Sci U S A (2011) 1.94
Draft genome of the red harvester ant Pogonomyrmex barbatus. Proc Natl Acad Sci U S A (2011) 1.88
Ancient host-pathogen associations maintained by specificity of chemotaxis and antibiosis. PLoS Biol (2006) 1.73
Common biosynthetic origins for polycyclic tetramate macrolactams from phylogenetically diverse bacteria. Proc Natl Acad Sci U S A (2010) 1.59
Phylogenetic analysis of mutualistic filamentous bacteria associated with fungus-growing ants. Can J Microbiol (2005) 1.54
Resident microbiota of the gypsy moth midgut harbors antibiotic resistance determinants. DNA Cell Biol (2009) 1.52
The complete genome sequence of Fibrobacter succinogenes S85 reveals a cellulolytic and metabolic specialist. PLoS One (2011) 1.48
Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality. Genome Res (2013) 1.45
Pathogenicity of Escovopsis weberi: The parasite of the attine ant-microbe symbiosis directly consumes the ant-cultivated fungus. Mycologia (2010) 1.45
Mycangimycin, a polyene peroxide from a mutualist Streptomyces sp. Org Lett (2009) 1.45
Defending against parasites: fungus-growing ants combine specialized behaviours and microbial symbionts to protect their fungus gardens. Biol Lett (2006) 1.42
Consequences of climate warming and altered precipitation patterns for plant-insect and multitrophic interactions. Plant Physiol (2012) 1.41
Insect symbioses: a case study of past, present, and future fungus-growing ant research. Environ Entomol (2009) 1.41
The natural history of antibiotics. Curr Biol (2009) 1.32
Black yeast symbionts compromise the efficiency of antibiotic defenses in fungus-growing ants. Ecology (2008) 1.25
Antagonistic bacterial interactions help shape host-symbiont dynamics within the fungus-growing ant-microbe mutualism. PLoS One (2007) 1.23
Contributions of gut bacteria to Bacillus thuringiensis-induced mortality vary across a range of Lepidoptera. BMC Biol (2009) 1.22
Comparison of 26 sphingomonad genomes reveals diverse environmental adaptations and biodegradative capabilities. Appl Environ Microbiol (2013) 1.21
Specificity in the symbiotic association between fungus-growing ants and protective Pseudonocardia bacteria. Proc Biol Sci (2010) 1.20
Cellulose-degrading bacteria associated with the invasive woodwasp Sirex noctilio. ISME J (2011) 1.20
From commensal to pathogen: translocation of Enterococcus faecalis from the midgut to the hemocoel of Manduca sexta. MBio (2011) 1.18
Chemical analyses of wasp-associated streptomyces bacteria reveal a prolific potential for natural products discovery. PLoS One (2011) 1.18
Exploiting a mutualism: parasite specialization on cultivars within the fungus-growing ant symbiosis. Proc Biol Sci (2004) 1.17
Complex host-pathogen coevolution in the Apterostigma fungus-growing ant-microbe symbiosis. BMC Evol Biol (2006) 1.16
Aerobic deconstruction of cellulosic biomass by an insect-associated Streptomyces. Sci Rep (2013) 1.16
The infrabuccal pellet piles of fungus-growing ants. Naturwissenschaften (2003) 1.15
Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens. ISME J (2012) 1.15
Symbiont recognition of mutualistic bacteria by Acromyrmex leaf-cutting ants. ISME J (2007) 1.14
Gut microbiota of an invasive subcortical beetle, Agrilus planipennis Fairmaire, across various life stages. Environ Entomol (2008) 1.14
Microtermolides A and B from termite-associated Streptomyces sp. and structural revision of vinylamycin. Org Lett (2012) 1.14
Symbiotic complexity: discovery of a fifth symbiont in the attine ant-microbe symbiosis. Biol Lett (2007) 1.09
Sceliphrolactam, a polyene macrocyclic lactam from a wasp-associated Streptomyces sp. Org Lett (2011) 1.08
Microbial community structure of leaf-cutter ant fungus gardens and refuse dumps. PLoS One (2010) 1.07
Multipartite symbioses among fungi, mites, nematodes, and the spruce beetle, Dendroctonus rufipennis. Environ Entomol (2008) 1.07
Mountain pine beetles colonizing historical and naive host trees are associated with a bacterial community highly enriched in genes contributing to terpene metabolism. Appl Environ Microbiol (2013) 1.06
Signal mimics derived from a metagenomic analysis of the gypsy moth gut microbiota. Appl Environ Microbiol (2007) 1.06
Gene fragmentation in bacterial draft genomes: extent, consequences and mitigation. BMC Genomics (2012) 1.06
Low host-pathogen specificity in the leaf-cutting ant-microbe symbiosis. Proc Biol Sci (2007) 1.02
Leucoagaricus gongylophorus produces diverse enzymes for the degradation of recalcitrant plant polymers in leaf-cutter ant fungus gardens. Appl Environ Microbiol (2013) 1.01
Geographic variation in bacterial communities associated with the red turpentine beetle (Coleoptera: Curculionidae). Environ Entomol (2010) 0.99
Ecological interactions drive evolutionary loss of traits. Ecol Lett (2012) 0.99
Bacteria associated with a tree-killing insect reduce concentrations of plant defense compounds. J Chem Ecol (2013) 0.99
Symbiont interactions in a tripartite mutualism: exploring the presence and impact of antagonism between two fungus-growing ant mutualists. PLoS One (2010) 0.98
The population structure of antibiotic-producing bacterial symbionts of Apterostigma dentigerum ants: impacts of coevolution and multipartite symbiosis. Am Nat (2012) 0.98
Parasites may help stabilize cooperative relationships. BMC Evol Biol (2009) 0.98
Fire injury reduces inducible defenses of lodgepole pine against Mountain pine beetle. J Chem Ecol (2011) 0.97
Parasitoids and dipteran predators exploit volatiles from microbial symbionts to locate bark beetles. Environ Entomol (2008) 0.96
Genome sequence of Streptomyces griseus strain XylebKG-1, an ambrosia beetle-associated actinomycete. J Bacteriol (2011) 0.95
Variation in Pseudonocardia antibiotic defence helps govern parasite-induced morbidity in Acromyrmex leaf-cutting ants. Environ Microbiol Rep (2009) 0.95
SREB, a GATA transcription factor that directs disparate fates in Blastomyces dermatitidis including morphogenesis and siderophore biosynthesis. PLoS Pathog (2010) 0.94
Antibiotic and antimalarial quinones from fungus-growing ant-associated Pseudonocardia sp. J Nat Prod (2012) 0.94
Cellulolytic Streptomyces strains associated with herbivorous insects share a phylogenetically linked capacity to degrade lignocellulose. Appl Environ Microbiol (2014) 0.94
Exploring the potential for actinobacteria as defensive symbionts in fungus-growing termites. Microb Ecol (2011) 0.92
ORFcor: identifying and accommodating ORF prediction inconsistencies for phylogenetic analysis. PLoS One (2013) 0.91
Simulated climate warming alters phenological synchrony between an outbreak insect herbivore and host trees. Oecologia (2014) 0.89
Presence and diversity of Streptomyces in Dendroctonus and sympatric bark beetle galleries across North America. Microb Ecol (2011) 0.88
Bionectriol A, a polyketide glycoside from the fungus Bionectria sp. associated with the fungus-growing ant, Apterostigma dentigerum. Tetrahedron Lett (2009) 0.88
Phloeophagous and predaceous insects responding to synthetic pheromones of bark beetles inhabiting white spruce stands in the Great Lakes region. J Chem Ecol (2003) 0.88
Chemical modulators of the innate immune response alter gypsy moth larval susceptibility to Bacillus thuringiensis. BMC Microbiol (2010) 0.88
Responses of bark beetle-associated bacteria to host monoterpenes and their relationship to insect life histories. J Chem Ecol (2011) 0.86
Leaf ontogeny influences leaf phenolics and the efficacy of genetically expressed Bacillus thuringiensis cry1A(a) d-endotoxin in hybrid poplar against gypsy moth. J Chem Ecol (2003) 0.86
Complete Genome of Serratia sp. Strain FGI 94, a Strain Associated with Leaf-Cutter Ant Fungus Gardens. Genome Announc (2013) 0.85
Gender- and sequence-dependent predation within group colonizers of defended plants: a constraint on cheating among bark beetles? Oecologia (2003) 0.85
Xenorhabdus bovienii Strain Diversity Impacts Coevolution and Symbiotic Maintenance with Steinernema spp. Nematode Hosts. MBio (2015) 0.85
Phylogeography of spruce beetles (Dendroctonus rufipennis Kirby) (Curculionidae: Scolytinae) in North America. Mol Ecol (2007) 0.85
Acquisition and structuring of midgut bacterial communities in gypsy moth (Lepidoptera: Erebidae) larvae. Environ Entomol (2014) 0.85
Ephemeral windows of opportunity for horizontal transmission of fungal symbionts in leaf-cutting ants. Evolution (2009) 0.84
Complete genome sequence of the cellulose-degrading bacterium Cellulosilyticum lentocellum. J Bacteriol (2011) 0.83
The fungus gardens of leaf-cutter ants undergo a distinct physiological transition during biomass degradation. Environ Microbiol Rep (2014) 0.82
On ants, plants and fungi. New Phytol (2009) 0.82
Phylogenomic analysis and predicted physiological role of the proton-translocating NADH:quinone oxidoreductase (complex I) across bacteria. MBio (2015) 0.81
Trap lure blend of pine volatiles and bark beetle pheromones for Monochamus spp. (Coleoptera: Cerambycidae) in pine forests of Canada and the United States. J Econ Entomol (2013) 0.81
Variation in complex semiochemical signals arising from insects and host plants. Environ Entomol (2010) 0.81
Characterization of actinobacteria associated with three ant-plant mutualisms. Microb Ecol (2014) 0.80
Draft genome sequence of Streptomyces sp. strain Wigar10, isolated from a surface-sterilized garlic bulb. J Bacteriol (2011) 0.80
Aspen defense chemicals influence midgut bacterial community composition of gypsy moth. J Chem Ecol (2014) 0.80
Preliminary in vitro insights into the use of natural fungal pathogens of leaf-cutting ants as biocontrol agents. Curr Microbiol (2011) 0.79
Plant-associated bacteria degrade defense chemicals and reduce their adverse effects on an insect defoliator. Oecologia (2014) 0.79
Prevalence of Borrelia burgdorferi and Anaplasma phagocytophilum in Ixodes scapularis (Acari: Ixodidae) nymphs collected in managed red pine forests in Wisconsin. J Med Entomol (2014) 0.78
Experimental climate warming alters aspen and birch phytochemistry and performance traits for an outbreak insect herbivore. Glob Chang Biol (2014) 0.77
Contrasting Patterns of Diterpene Acid Induction by Red Pine and White Spruce to Simulated Bark Beetle Attack, and Interspecific Differences in Sensitivity Among Fungal Associates. J Chem Ecol (2015) 0.77
Host plant phenology affects performance of an invasive weevil, Phyllobius oblongus (Coleoptera: Curculionidae), in a northern hardwood forest. Environ Entomol (2010) 0.77
Association between Pseudonocardia symbionts and Atta leaf-cutting ants suggested by improved isolation methods. Int Microbiol (2013) 0.77
Complete Genome of Enterobacteriaceae Bacterium Strain FGI 57, a Strain Associated with Leaf-Cutter Ant Fungus Gardens. Genome Announc (2013) 0.77
Macrotermycins A-D, Glycosylated Macrolactams from a Termite-Associated Amycolatopsis sp. M39. Org Lett (2017) 0.77
Sources of insect and plant volatiles attractive to cottonwood leaf beetles feeding on hybrid poplar. J Chem Ecol (2006) 0.76
Density-dependent effects of multiple predators sharing a common prey in an endophytic habitat. Oecologia (2004) 0.75