Published in Annu Rev Microbiol on January 01, 2008
Reproducible community dynamics of the gastrointestinal microbiota following antibiotic perturbation. Infect Immun (2009) 7.48
Microbial life in the phyllosphere. Nat Rev Microbiol (2012) 2.61
Fundamentals of microbial community resistance and resilience. Front Microbiol (2012) 2.53
Interaction and signalling between a cosmopolitan phytoplankton and associated bacteria. Nature (2015) 2.50
Biofilm Formation As a Response to Ecological Competition. PLoS Biol (2015) 2.42
From structure to function: the ecology of host-associated microbial communities. Microbiol Mol Biol Rev (2010) 2.42
Environments that induce synthetic microbial ecosystems. PLoS Comput Biol (2010) 2.04
Competition sensing: the social side of bacterial stress responses. Nat Rev Microbiol (2013) 1.64
Coherent dynamics and association networks among lake bacterioplankton taxa. ISME J (2011) 1.63
Social evolution in multispecies biofilms. Proc Natl Acad Sci U S A (2011) 1.58
Microbial metabolic exchange--the chemotype-to-phenotype link. Nat Chem Biol (2011) 1.55
Predicting bacterial community assemblages using an artificial neural network approach. Nat Methods (2012) 1.51
Chapter 12: Human microbiome analysis. PLoS Comput Biol (2012) 1.44
Stochastic Assembly of Bacteria in Microwell Arrays Reveals the Importance of Confinement in Community Development. PLoS One (2016) 1.39
Quorum-sensing control of antibiotic synthesis in Burkholderia thailandensis. J Bacteriol (2009) 1.33
Patterns and scales in gastrointestinal microbial ecology. Gastroenterology (2009) 1.33
The microbiota and allergies/asthma. PLoS Pathog (2010) 1.32
Skin microbiota: microbial community structure and its potential association with health and disease. Infect Genet Evol (2011) 1.24
A road map for the development of community systems (CoSy) biology. Nat Rev Microbiol (2012) 1.16
Microbial Surface Colonization and Biofilm Development in Marine Environments. Microbiol Mol Biol Rev (2015) 1.14
Fitness and stability of obligate cross-feeding interactions that emerge upon gene loss in bacteria. ISME J (2013) 1.13
Challenges in microbial ecology: building predictive understanding of community function and dynamics. ISME J (2016) 1.12
Marine microbial symbiosis heats up: the phylogenetic and functional response of a sponge holobiont to thermal stress. ISME J (2013) 1.12
The spectral networks paradigm in high throughput mass spectrometry. Mol Biosyst (2012) 1.11
Towards a predictive systems-level model of the human microbiome: progress, challenges, and opportunities. Curr Opin Biotechnol (2013) 1.10
Evolutionary limits to cooperation in microbial communities. Proc Natl Acad Sci U S A (2014) 1.08
Interactions in the microbiome: communities of organisms and communities of genes. FEMS Microbiol Rev (2013) 1.05
Competition between species can stabilize public-goods cooperation within a species. Mol Syst Biol (2012) 1.03
Functional microbial diversity explains groundwater chemistry in a pristine aquifer. BMC Microbiol (2013) 1.02
Emergent biosynthetic capacity in simple microbial communities. PLoS Comput Biol (2014) 0.99
Ecological distribution and population physiology defined by proteomics in a natural microbial community. Mol Syst Biol (2010) 0.99
Kin cell lysis is a danger signal that activates antibacterial pathways of Pseudomonas aeruginosa. Elife (2015) 0.97
Ecological theory as a foundation to control pathogenic invasion in aquaculture. ISME J (2014) 0.97
Shifting the paradigm from pathogens to pathobiome: new concepts in the light of meta-omics. Front Cell Infect Microbiol (2014) 0.96
Mapping the inner workings of the microbiome: genomic- and metagenomic-based study of metabolism and metabolic interactions in the human microbiome. Cell Metab (2014) 0.94
Microbial diversity and structure are drivers of the biological barrier effect against Listeria monocytogenes in soil. PLoS One (2013) 0.92
Accumulation of the antibiotic phenazine-1-carboxylic acid in the rhizosphere of dryland cereals. Appl Environ Microbiol (2011) 0.90
The Shift of an Intestinal "Microbiome" to a "Pathobiome" Governs the Course and Outcome of Sepsis Following Surgical Injury. Shock (2016) 0.90
Synthetic Ecology of Microbes: Mathematical Models and Applications. J Mol Biol (2015) 0.88
Resource availability and competition shape the evolution of survival and growth ability in a bacterial community. PLoS One (2013) 0.88
An integrated study to analyze soil microbial community structure and metabolic potential in two forest types. PLoS One (2014) 0.87
Nutrient-responsive regulation determines biodiversity in a colicin-mediated bacterial community. BMC Biol (2014) 0.87
Non-random assembly of bacterioplankton communities in the subtropical north pacific ocean. Front Microbiol (2011) 0.86
Competition for ammonia influences the structure of chemotrophic communities in geothermal springs. Appl Environ Microbiol (2013) 0.86
Minimization of extracellular space as a driving force in prokaryote association and the origin of eukaryotes. Biol Direct (2014) 0.85
Human food chain and microorganisms: a case of co-evolution. Front Microbiol (2010) 0.84
A stabilized microbial ecosystem of self-limiting bacteria using synthetic quorum-regulated lysis. Nat Microbiol (2017) 0.81
Comparative mass spectrometry-based metabolomics strategies for the investigation of microbial secondary metabolites. Nat Prod Rep (2016) 0.80
Subinhibitory antibiotic concentrations mediate nutrient use and competition among soil streptomyces. PLoS One (2013) 0.80
Interspecific diversity reduces and functionally substitutes for intraspecific variation in biofilm communities. ISME J (2015) 0.80
Determining microbial products and identifying molecular targets in the human microbiome. Cell Metab (2014) 0.80
Competitive strategies differentiate closely related species of marine actinobacteria. ISME J (2015) 0.80
A Western diet ecological module identified from the 'humanized' mouse microbiota predicts diet in adults and formula feeding in children. PLoS One (2013) 0.79
Effects of Bacterial Community Members on the Proteome of the Ammonia-Oxidizing Bacterium Nitrosomonas sp. Strain Is79. Appl Environ Microbiol (2016) 0.78
Remarkable recovery and colonization behaviour of methane oxidizing bacteria in soil after disturbance is controlled by methane source only. Microb Ecol (2014) 0.78
Extinction, coexistence, and localized patterns of a bacterial population with contact-dependent inhibition. BMC Syst Biol (2014) 0.78
Multifactorial Competition and Resistance in a Two-Species Bacterial System. PLoS Genet (2015) 0.78
Microbial competition in polar soils: a review of an understudied but potentially important control on productivity. Biology (Basel) (2013) 0.78
Flavor Profile of Chinese Liquor Is Altered by Interactions of Intrinsic and Extrinsic Microbes. Appl Environ Microbiol (2015) 0.77
Whole-genome comparative analysis of virulence genes unveils similarities and differences between endophytes and other symbiotic bacteria. Front Microbiol (2015) 0.77
Merging metagenomics and geochemistry reveals environmental controls on biological diversity and evolution. BMC Ecol (2014) 0.76
The gut bacterium Bacteroides thetaiotaomicron influences the virulence potential of the enterohemorrhagic Escherichia coli O103:H25. PLoS One (2015) 0.76
Time Course Exo-Metabolomic Profiling in the Green Marine Macroalga Ulva (Chlorophyta) for Identification of Growth Phase-Dependent Biomarkers. Mar Drugs (2017) 0.75
Interspecies interactions are an integral determinant of microbial community dynamics. Front Microbiol (2015) 0.75
Pseudomonas spp. diversity is negatively associated with suppression of the wheat take-all pathogen. Sci Rep (2016) 0.75
Extracellular Lipase and Protease Production from a Model Drinking Water Bacterial Community Is Functionally Robust to Absence of Individual Members. PLoS One (2015) 0.75
The Contribution of High-Order Metabolic Interactions to the Global Activity of a Four-Species Microbial Community. PLoS Comput Biol (2016) 0.75
Impacts of chemical gradients on microbial community structure. ISME J (2017) 0.75
Soil bacterial endemism and potential functional redundancy in natural broadleaf forest along a latitudinal gradient. Sci Rep (2016) 0.75
Facilitation as Attenuating of Environmental Stress among Structured Microbial Populations. ScientificWorldJournal (2016) 0.75
Cooperation in carbon source degradation shapes spatial self-organization of microbial consortia on hydrated surfaces. Sci Rep (2017) 0.75
A passive mutualistic interaction promotes the evolution of spatial structure within microbial populations. BMC Evol Biol (2017) 0.75
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol (2009) 77.55
Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol (2005) 31.06
Science faculty's subtle gender biases favor male students. Proc Natl Acad Sci U S A (2012) 12.93
Integration of microbial ecology and statistics: a test to compare gene libraries. Appl Environ Microbiol (2004) 12.50
Introducing SONS, a tool for operational taxonomic unit-based comparisons of microbial community memberships and structures. Appl Environ Microbiol (2006) 6.45
Metagenomics: genomic analysis of microbial communities. Annu Rev Genet (2004) 6.27
Status of the microbial census. Microbiol Mol Biol Rev (2004) 6.14
Introducing TreeClimber, a test to compare microbial community structures. Appl Environ Microbiol (2006) 5.69
Bacterial competition: surviving and thriving in the microbial jungle. Nat Rev Microbiol (2010) 5.63
Professional development. Summer institute to improve university science teaching. Science (2009) 5.33
Science education. Increasing persistence of college students in STEM. Science (2013) 4.72
Professional skills. The merits of training mentors. Science (2006) 4.56
Call of the wild: antibiotic resistance genes in natural environments. Nat Rev Microbiol (2010) 4.22
Metagenomics for studying unculturable microorganisms: cutting the Gordian knot. Genome Biol (2005) 3.96
Toward a census of bacteria in soil. PLoS Comput Biol (2006) 3.61
Uncultured soil bacteria are a reservoir of new antibiotic resistance genes. Environ Microbiol (2004) 2.68
Does combination antimicrobial therapy reduce mortality in Gram-negative bacteraemia? A meta-analysis. Lancet Infect Dis (2004) 2.67
The interdependence of mechanisms underlying climate-driven vegetation mortality. Trends Ecol Evol (2011) 2.67
A census of rRNA genes and linked genomic sequences within a soil metagenomic library. Appl Environ Microbiol (2003) 2.62
Census of the bacterial community of the gypsy moth larval midgut by using culturing and culture-independent methods. Appl Environ Microbiol (2004) 2.55
Fundamentals of microbial community resistance and resilience. Front Microbiol (2012) 2.53
Meeting report: the 2004 National Academies Summer Institute on Undergraduate Education in Biology. Cell Biol Educ (2004) 2.33
Biotechnological prospects from metagenomics. Curr Opin Biotechnol (2003) 2.32
A statistical toolbox for metagenomics: assessing functional diversity in microbial communities. BMC Bioinformatics (2008) 2.17
Functional metagenomics reveals diverse beta-lactamases in a remote Alaskan soil. ISME J (2008) 2.17
Midgut bacteria required for Bacillus thuringiensis insecticidal activity. Proc Natl Acad Sci U S A (2006) 2.15
Beyond the Venn diagram: the hunt for a core microbiome. Environ Microbiol (2011) 2.13
Isolation of antibiotics turbomycin a and B from a metagenomic library of soil microbial DNA. Appl Environ Microbiol (2002) 1.89
Diverse antibiotic resistance genes in dairy cow manure. MBio (2014) 1.86
A bacterial metapopulation adapts locally to phage predation despite global dispersal. Genome Res (2007) 1.85
The pipeline. Scientific teaching in practice. Science (2008) 1.80
A meta-analysis of changes in bacterial and archaeal communities with time. ISME J (2013) 1.80
NIH Director's Pioneer Awards: could the selection process be biased against women? J Womens Health (Larchmt) (2005) 1.73
The presence of female conveners correlates with a higher proportion of female speakers at scientific symposia. MBio (2014) 1.63
Hydroxymalonyl-acyl carrier protein (ACP) and aminomalonyl-ACP are two additional type I polyketide synthase extender units. Proc Natl Acad Sci U S A (2006) 1.56
Breaching the great wall: peptidoglycan and microbial interactions. Nat Rev Microbiol (2006) 1.53
Resident microbiota of the gypsy moth midgut harbors antibiotic resistance determinants. DNA Cell Biol (2009) 1.52
Metagenomic analysis of apple orchard soil reveals antibiotic resistance genes encoding predicted bifunctional proteins. Appl Environ Microbiol (2010) 1.49
Culturing captures members of the soil rare biosphere. Environ Microbiol (2012) 1.48
Competencies: a cure for pre-med curriculum. Science (2011) 1.47
Consequences of climate warming and altered precipitation patterns for plant-insect and multitrophic interactions. Plant Physiol (2012) 1.41
Genetics of zwittermicin a production by Bacillus cereus. Appl Environ Microbiol (2004) 1.40
Intracellular screen to identify metagenomic clones that induce or inhibit a quorum-sensing biosensor. Appl Environ Microbiol (2005) 1.37
Diversity in academic medicine: the stages of change model. J Womens Health (Larchmt) (2005) 1.31
Robustness of the bacterial community in the cabbage white butterfly larval midgut. Microb Ecol (2010) 1.29
Frequent replenishment sustains the beneficial microbiome of Drosophila melanogaster. MBio (2013) 1.26
Contributions of gut bacteria to Bacillus thuringiensis-induced mortality vary across a range of Lepidoptera. BMC Biol (2009) 1.22
Cellulose-degrading bacteria associated with the invasive woodwasp Sirex noctilio. ISME J (2011) 1.20
Sorting out metagenomes. Nat Biotechnol (2005) 1.19
From commensal to pathogen: translocation of Enterococcus faecalis from the midgut to the hemocoel of Manduca sexta. MBio (2011) 1.18
Miniprimer PCR, a new lens for viewing the microbial world. Appl Environ Microbiol (2007) 1.16
Gut microbiota of an invasive subcortical beetle, Agrilus planipennis Fairmaire, across various life stages. Environ Entomol (2008) 1.14
Searching for excellence & diversity: increasing the hiring of women faculty at one academic medical center. Acad Med (2010) 1.12
Unexpected diversity during community succession in the apple flower microbiome. MBio (2013) 1.11
Multipartite symbioses among fungi, mites, nematodes, and the spruce beetle, Dendroctonus rufipennis. Environ Entomol (2008) 1.07
Mountain pine beetles colonizing historical and naive host trees are associated with a bacterial community highly enriched in genes contributing to terpene metabolism. Appl Environ Microbiol (2013) 1.06
Signal mimics derived from a metagenomic analysis of the gypsy moth gut microbiota. Appl Environ Microbiol (2007) 1.06
Recovery, purification, and cloning of high-molecular-weight DNA from soil microorganisms. Appl Environ Microbiol (2008) 1.05
Metagenomics is not enough. DNA Cell Biol (2008) 1.05
Peptidoglycan from Bacillus cereus mediates commensalism with rhizosphere bacteria from the Cytophaga-Flavobacterium group. Appl Environ Microbiol (2006) 1.03
The last word: books as a statistical metaphor for microbial communities. Annu Rev Microbiol (2007) 1.02
Natural selection on floral traits of Lobelia (Lobeliaceae): spatial and temporal variation. Am J Bot (2003) 1.00
Geographic variation in bacterial communities associated with the red turpentine beetle (Coleoptera: Curculionidae). Environ Entomol (2010) 0.99
Bacteria associated with a tree-killing insect reduce concentrations of plant defense compounds. J Chem Ecol (2013) 0.99
Characterization of soil bacterial assemblies in Brazilian savanna-like vegetation reveals acidobacteria dominance. Microb Ecol (2012) 0.98
Fire injury reduces inducible defenses of lodgepole pine against Mountain pine beetle. J Chem Ecol (2011) 0.97
Use of a promoter trap to identify Bacillus cereus genes regulated by tomato seed exudate and a rhizosphere resident, Pseudomonas aureofaciens. Appl Environ Microbiol (2003) 0.97
Novel florfenicol and chloramphenicol resistance gene discovered in Alaskan soil by using functional metagenomics. Appl Environ Microbiol (2010) 0.96
Parasitoids and dipteran predators exploit volatiles from microbial symbionts to locate bark beetles. Environ Entomol (2008) 0.96
Identification of synthetic inducers and inhibitors of the quorum-sensing regulator LasR in Pseudomonas aeruginosa by high-throughput screening. Appl Environ Microbiol (2010) 0.95
Cellulolytic Streptomyces strains associated with herbivorous insects share a phylogenetically linked capacity to degrade lignocellulose. Appl Environ Microbiol (2014) 0.94
Toward an understanding of microbial communities through analysis of communication networks. Antonie Van Leeuwenhoek (2002) 0.94
Minimization of chloroplast contamination in 16S rRNA gene pyrosequencing of insect herbivore bacterial communities. J Microbiol Methods (2013) 0.94
Social science. Scientific diversity interventions. Science (2014) 0.93
Metagenomic analysis of Streptomyces lividans reveals host-dependent functional expression. Appl Environ Microbiol (2012) 0.93
Quorum-sensing signals in the microbial community of the cabbage white butterfly larval midgut. ISME J (2008) 0.90
Simulated climate warming alters phenological synchrony between an outbreak insect herbivore and host trees. Oecologia (2014) 0.89
Psychrotrophic strain of Janthinobacterium lividum from a cold Alaskan soil produces prodigiosin. DNA Cell Biol (2010) 0.88
Chemical modulators of the innate immune response alter gypsy moth larval susceptibility to Bacillus thuringiensis. BMC Microbiol (2010) 0.88
Phloeophagous and predaceous insects responding to synthetic pheromones of bark beetles inhabiting white spruce stands in the Great Lakes region. J Chem Ecol (2003) 0.88
Responses of bark beetle-associated bacteria to host monoterpenes and their relationship to insect life histories. J Chem Ecol (2011) 0.86
Leaf ontogeny influences leaf phenolics and the efficacy of genetically expressed Bacillus thuringiensis cry1A(a) d-endotoxin in hybrid poplar against gypsy moth. J Chem Ecol (2003) 0.86
Laboratory life: Scientists of the world speak up for equality. Nature (2013) 0.86
Gender- and sequence-dependent predation within group colonizers of defended plants: a constraint on cheating among bark beetles? Oecologia (2003) 0.85
Phylogeography of spruce beetles (Dendroctonus rufipennis Kirby) (Curculionidae: Scolytinae) in North America. Mol Ecol (2007) 0.85
Money, sex, and drugs: a case study to teach the genetics of antibiotic resistance. CBE Life Sci Educ (2008) 0.85
Acquisition and structuring of midgut bacterial communities in gypsy moth (Lepidoptera: Erebidae) larvae. Environ Entomol (2014) 0.85
Streptomycin application has no detectable effect on bacterial community structure in apple orchard soil. Appl Environ Microbiol (2013) 0.83
Construction and validation of two metagenomic DNA libraries from Cerrado soil with high clay content. Biotechnol Lett (2011) 0.83