Published in Stand Genomic Sci on February 22, 2013
The rebirth of culture in microbiology through the example of culturomics to study human gut microbiota. Clin Microbiol Rev (2015) 11.49
Non contiguous-finished genome sequence and description of Dielma fastidiosa gen. nov., sp. nov., a new member of the Family Erysipelotrichaceae. Stand Genomic Sci (2013) 1.23
Non-contiguous finished genome sequence and description of Bacillus massilioanorexius sp. nov. Stand Genomic Sci (2013) 1.18
Non contiguous-finished genome sequence and description of Bacillus massiliosenegalensis sp. nov. Stand Genomic Sci (2013) 1.08
Genome sequence and description of Timonella senegalensis gen. nov., sp. nov., a new member of the suborder Micrococcinae. Stand Genomic Sci (2013) 1.05
Genome sequence and description of Anaerosalibacter massiliensis sp. nov. New Microbes New Infect (2016) 1.05
Non-contiguous finished genome sequence and description of Kallipyga massiliensis gen. nov., sp. nov., a new member of the family Clostridiales Incertae Sedis XI. Stand Genomic Sci (2013) 0.96
Non-contiguous finished genome sequence and description of Megasphaera massiliensis sp. nov. Stand Genomic Sci (2013) 0.91
What's in a Name? New Bacterial Species and Changes to Taxonomic Status from 2012 through 2015. J Clin Microbiol (2016) 0.90
Non contiguous-finished genome sequence and description of Clostridium jeddahense sp. nov. Stand Genomic Sci (2014) 0.89
Non-contiguous finished genome sequence and description of Nosocomiicoccus massiliensis sp. nov. Stand Genomic Sci (2013) 0.86
Non-contiguous finished genome sequence and description of Bacillus massilioalgeriensis sp. nov. Stand Genomic Sci (2014) 0.84
Non-contiguous finished genome sequence and description of Corynebacterium jeddahense sp. nov. Stand Genomic Sci (2014) 0.83
Non-contiguous finished genome sequence and description of Holdemania massiliensis sp. nov. Stand Genomic Sci (2013) 0.83
Virgibacillus senegalensis sp. nov., a new moderately halophilic bacterium isolated from human gut. New Microbes New Infect (2015) 0.80
New Microbes New Infections promotes modern prokaryotic taxonomy: a new section "TaxonoGenomics: new genomes of microorganisms in humans". New Microbes New Infect (2015) 0.80
Genome sequence and description of Corynebacterium ihumii sp. nov. Stand Genomic Sci (2014) 0.80
Non-contiguous finished genome sequence and description of Paucisalibacillus algeriensis sp. nov. Stand Genomic Sci (2014) 0.80
Non-contiguous finished genome sequence and description of Collinsella massiliensis sp. nov. Stand Genomic Sci (2014) 0.80
Genome sequence and description of Nesterenkonia massiliensis sp. nov. strain NP1(T.). Stand Genomic Sci (2014) 0.80
Tessaracoccus massiliensis sp. nov., a new bacterial species isolated from the human gut. New Microbes New Infect (2016) 0.79
Noncontiguous finished genome sequence and description of Weeksella massiliensis sp. nov. New Microbes New Infect (2015) 0.78
Microvirga massiliensis sp. nov., the human commensal with the largest genome. Microbiologyopen (2016) 0.78
Non-contiguous finished genome sequence and description of Bacteroides neonati sp. nov., a new species of anaerobic bacterium. Stand Genomic Sci (2014) 0.78
Non-contiguous finished genome sequence and description of Anaerococcus pacaensis sp. nov., a new species of anaerobic bacterium. Stand Genomic Sci (2013) 0.78
Non-contiguous finished genome sequence and description of Alistipes ihumii sp. nov. Stand Genomic Sci (2014) 0.78
Non contiguous-finished genome sequence and description of Enorma timonensis sp. nov. Stand Genomic Sci (2014) 0.78
Genome sequence and description of Bacteroides timonensis sp. nov. Stand Genomic Sci (2014) 0.77
Bacillus rubiinfantis sp. nov. strain mt2(T), a new bacterial species isolated from human gut. New Microbes New Infect (2015) 0.77
Noncontiguous finished genome sequence and description of Nocardioides massiliensis sp. nov. GD13(T). New Microbes New Infect (2016) 0.75
Massilibacterium senegalense gen. nov., sp. nov., a new bacterial genus isolated from the human gut. New Microbes New Infect (2016) 0.75
Non-contiguous finished genome sequence and description of Clostridium saudii sp. nov. Stand Genomic Sci (2014) 0.75
High quality genome sequence and description of Enterobacter mori strain 5-4, isolated from a mixture of formation water and crude-oil. Stand Genomic Sci (2015) 0.75
Bacillus niameyensis sp. nov., a new bacterial species isolated from human gut. New Microbes New Infect (2015) 0.75
Noncontiguous finished genome sequence and description of Paenibacillus antibioticophila sp. nov. GD11(T), the type strain of Paenibacillus antibioticophila. New Microbes New Infect (2015) 0.75
Genome sequence and description of Anaeromassilibacillus senegalensis gen. nov., sp. nov., isolated from the gut of patient with kwashiorkor. New Microbes New Infect (2017) 0.75
Noncontiguous finished genome sequences and description of Bacillus massiliglaciei, Bacillus mediterraneensis, Bacillus massilinigeriensis, Bacillus phocaeensis and Bacillus tuaregi, five new species identified by culturomics. New Microbes New Infect (2017) 0.75
Noncontiguous finished genome sequences and descriptions of 'Paenibacillus bouchesdurhonensis,' 'Paenibacillus rubinfantis,' 'Paenibacillus senegalimassiliensis' and 'Paenibacillus tuaregi' identified by culturomics. New Microbes New Infect (2017) 0.75
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet (2000) 336.52
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res (1997) 142.55
RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res (2007) 85.81
Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol (2001) 66.87
Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci U S A (1990) 50.63
Improved prediction of signal peptides: SignalP 3.0. J Mol Biol (2004) 48.40
The minimum information about a genome sequence (MIGS) specification. Nat Biotechnol (2008) 31.04
Ongoing revolution in bacteriology: routine identification of bacteria by matrix-assisted laser desorption ionization time-of-flight mass spectrometry. Clin Infect Dis (2009) 16.51
Microbial culturomics: paradigm shift in the human gut microbiome study. Clin Microbiol Infect (2012) 7.97
Malaria morbidity and pyrethroid resistance after the introduction of insecticide-treated bednets and artemisinin-based combination therapies: a longitudinal study. Lancet Infect Dis (2011) 7.42
Notes on the characterization of prokaryote strains for taxonomic purposes. Int J Syst Evol Microbiol (2009) 5.37
LPSN--list of prokaryotic names with standing in nomenclature. Nucleic Acids Res (2013) 4.45
Non-contiguous finished genome sequence and description of Anaerococcus senegalensis sp. nov. Stand Genomic Sci (2012) 2.23
Non-contiguous finished genome sequence and description of Alistipes timonensis sp. nov. Stand Genomic Sci (2012) 2.05
Non-contiguous finished genome sequence and description of Paenibacillus senegalensis sp. nov. Stand Genomic Sci (2012) 1.90
Non-contiguous finished genome sequence and description of Clostridium senegalense sp. nov. Stand Genomic Sci (2012) 1.86
Non contiguous-finished genome sequence and description of Bacillus timonensis sp. nov. Stand Genomic Sci (2012) 1.80
Non contiguous-finished genome sequence and description of Peptoniphilus timonensis sp. nov. Stand Genomic Sci (2012) 1.73
Non-contiguous finished genome sequence and description of Brevibacterium senegalense sp. nov. Stand Genomic Sci (2012) 1.66
Genome sequence and description of Alistipes senegalensis sp. nov. Stand Genomic Sci (2012) 1.60
Non-contiguous finished genome sequence and description of Kurthia massiliensis sp. nov. Stand Genomic Sci (2012) 1.59
Genome sequence and description of Aeromicrobium massiliense sp. nov. Stand Genomic Sci (2012) 1.51
Non-contiguous finished genome sequence and description of Herbaspirillum massiliense sp. nov. Stand Genomic Sci (2012) 1.50
Enterobacter cloacae complex: clinical impact and emerging antibiotic resistance. Future Microbiol (2012) 1.46
Non contiguous-finished genome sequence and description of Cellulomonas massiliensis sp. nov. Stand Genomic Sci (2012) 1.46
Enterobacter asburiae sp. nov., a new species found in clinical specimens, and reassignment of Erwinia dissolvens and Erwinia nimipressuralis to the genus Enterobacter as Enterobacter dissolvens comb. nov. and Enterobacter nimipressuralis comb. nov. J Clin Microbiol (1986) 1.45
Enterobacter hormaechei, a new species of the family Enterobacteriaceae formerly known as enteric group 75. J Clin Microbiol (1989) 1.42
Reassignment of enterobacter dissolvens to Enterobacter cloacae as E. cloacae subspecies dissolvens comb. nov. and emended description of Enterobacter asburiae and Enterobacter kobei. Syst Appl Microbiol (2005) 1.29
Enterobacter radicincitans sp. nov., a plant growth promoting species of the family Enterobacteriaceae. Syst Appl Microbiol (2005) 1.26
Enterobacter turicensis sp. nov. and Enterobacter helveticus sp. nov., isolated from fruit powder. Int J Syst Evol Microbiol (2007) 1.25
Enterobacter pulveris sp. nov., isolated from fruit powder, infant formula and an infant formula production environment. Int J Syst Evol Microbiol (2008) 1.10
Enterobacter oryzae sp. nov., a nitrogen-fixing bacterium isolated from the wild rice species Oryza latifolia. Int J Syst Evol Microbiol (2009) 1.04
Description of Enterobacter ludwigii sp. nov., a novel Enterobacter species of clinical relevance. Syst Appl Microbiol (2005) 1.02
Enterobacter arachidis sp. nov., a plant-growth-promoting diazotrophic bacterium isolated from rhizosphere soil of groundnut. Int J Syst Evol Microbiol (2009) 0.96
Enterobacter soli sp. nov.: a lignin-degrading γ-proteobacteria isolated from soil. Curr Microbiol (2010) 0.92
Efficacy of a broad host range lytic bacteriophage against E. coli adhered to urothelium. Curr Microbiol (2010) 0.88
Enterobacter kobei sp. nov., a new species of the family Enterobacteriaceae resembling Enterobacter cloacae. Curr Microbiol (1996) 0.86
Enterobacter cowaniisp. nov., a new species of the family Enterobacteriaceae. Curr Microbiol (2000) 0.84
Enterobacter mori sp. nov., associated with bacterial wilt on Morus alba L. Int J Syst Evol Microbiol (2011) 0.81
Ongoing revolution in bacteriology: routine identification of bacteria by matrix-assisted laser desorption ionization time-of-flight mass spectrometry. Clin Infect Dis (2009) 16.51
Identification of rare pathogenic bacteria in a clinical microbiology laboratory: impact of matrix-assisted laser desorption ionization-time of flight mass spectrometry. J Clin Microbiol (2013) 11.31
The 1.2-megabase genome sequence of Mimivirus. Science (2004) 8.37
Malaria morbidity and pyrethroid resistance after the introduction of insecticide-treated bednets and artemisinin-based combination therapies: a longitudinal study. Lancet Infect Dis (2011) 7.42
Tick-borne rickettsioses around the world: emerging diseases challenging old concepts. Clin Microbiol Rev (2005) 7.02
Comparative genomics of multidrug resistance in Acinetobacter baumannii. PLoS Genet (2006) 6.32
Chikungunya outbreaks--the globalization of vectorborne diseases. N Engl J Med (2007) 6.05
A giant virus in amoebae. Science (2003) 5.07
Positron emission tomography/computed tomography for diagnosis of prosthetic valve endocarditis: increased valvular 18F-fluorodeoxyglucose uptake as a novel major criterion. J Am Coll Cardiol (2013) 4.72
Whipple's disease. N Engl J Med (2007) 4.46
Amoebal coculture of "Mycobacterium massiliense" sp. nov. from the sputum of a patient with hemoptoic pneumonia. J Clin Microbiol (2004) 4.32
Microorganisms resistant to free-living amoebae. Clin Microbiol Rev (2004) 4.22
rpoB gene sequence-based characterization of emerging non-tuberculous mycobacteria with descriptions of Mycobacterium bolletii sp. nov., Mycobacterium phocaicum sp. nov. and Mycobacterium aubagnense sp. nov. Int J Syst Evol Microbiol (2006) 4.22
Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium. Nucleic Acids Res (2004) 4.19
The virophage as a unique parasite of the giant mimivirus. Nature (2008) 4.09
Comparative analysis of Acinetobacters: three genomes for three lifestyles. PLoS One (2008) 3.94
Molecular quantification of Gardnerella vaginalis and Atopobium vaginae loads to predict bacterial vaginosis. Clin Infect Dis (2008) 3.90
Rickettsial infections and fever, Vientiane, Laos. Emerg Infect Dis (2006) 3.87
Long-term outcome of Q fever endocarditis: a 26-year personal survey. Lancet Infect Dis (2010) 3.84
Comprehensive diagnostic strategy for blood culture-negative endocarditis: a prospective study of 819 new cases. Clin Infect Dis (2010) 3.84
Gene sequence-based criteria for identification of new rickettsia isolates and description of Rickettsia heilongjiangensis sp. nov. J Clin Microbiol (2003) 3.59
Understanding the cholera epidemic, Haiti. Emerg Infect Dis (2011) 3.57
Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome. Proc Natl Acad Sci U S A (2003) 3.55
Q Fever. Vet Microbiol (2009) 3.49
Novel chikungunya virus variant in travelers returning from Indian Ocean islands. Emerg Infect Dis (2006) 3.43
Gene-sequence-based criteria for species definition in bacteriology: the Bartonella paradigm. Trends Microbiol (2003) 3.40
Characterization of the naturally occurring oxacillinase of Acinetobacter baumannii. Antimicrob Agents Chemother (2005) 3.25
rpoB gene sequencing for identification of Corynebacterium species. J Clin Microbiol (2004) 3.24
Direct identification of bacteria in positive blood culture bottles by matrix-assisted laser desorption ionisation time-of-flight mass spectrometry. PLoS One (2009) 3.23
Cause of Black Death. Lancet Infect Dis (2002) 3.20
Monitoring bacterial community of human gut microbiota reveals an increase in Lactobacillus in obese patients and Methanogens in anorexic patients. PLoS One (2009) 3.18
Pig liver sausage as a source of hepatitis E virus transmission to humans. J Infect Dis (2010) 3.00
Molecular detection of Bartonella quintana, B. koehlerae, B. henselae, B. clarridgeiae, Rickettsia felis, and Wolbachia pipientis in cat fleas, France. Emerg Infect Dis (2003) 2.99
Update on tick-borne rickettsioses around the world: a geographic approach. Clin Microbiol Rev (2013) 2.97
Emerging rickettsioses of the Thai-Myanmar border. Emerg Infect Dis (2003) 2.91
The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite. PLoS Biol (2005) 2.88
Reductive genome evolution from the mother of Rickettsia. PLoS Genet (2007) 2.87
Comparative meta-analysis of the effect of Lactobacillus species on weight gain in humans and animals. Microb Pathog (2012) 2.85
MALDI-TOF-mass spectrometry applications in clinical microbiology. Future Microbiol (2010) 2.79
Marseillevirus-like virus recovered from blood donated by asymptomatic humans. J Infect Dis (2013) 2.79
Whipple's disease: new aspects of pathogenesis and treatment. Lancet Infect Dis (2008) 2.78
Blood culture-negative endocarditis in a reference center: etiologic diagnosis of 348 cases. Medicine (Baltimore) (2005) 2.78
Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle. Proc Natl Acad Sci U S A (2010) 2.76
Genotyping, Orientalis-like Yersinia pestis, and plague pandemics. Emerg Infect Dis (2004) 2.76
Point-of-care syndrome-based, rapid diagnosis of infections on commercial ships. J Travel Med (2013) 2.71
Risk of embolism and death in infective endocarditis: prognostic value of echocardiography: a prospective multicenter study. Circulation (2005) 2.69
Sequencing of the rpoB gene and flanking spacers for molecular identification of Acinetobacter species. J Clin Microbiol (2006) 2.58
Tick- and flea-borne rickettsial emerging zoonoses. Vet Res (2005) 2.56
The expansion of the microbiological spectrum of brain abscesses with use of multiple 16S ribosomal DNA sequencing. Clin Infect Dis (2009) 2.56
rpoB gene sequence-based identification of Staphylococcus species. J Clin Microbiol (2002) 2.55
Giant Marseillevirus highlights the role of amoebae as a melting pot in emergence of chimeric microorganisms. Proc Natl Acad Sci U S A (2009) 2.52
Coxiella burnetii genotyping. Emerg Infect Dis (2005) 2.50
A polyphasic strategy incorporating genomic data for the taxonomic description of novel bacterial species. Int J Syst Evol Microbiol (2014) 2.45
Wind in November, Q fever in December. Emerg Infect Dis (2004) 2.38
Rickettsia felis-associated uneruptive fever, Senegal. Emerg Infect Dis (2010) 2.37
The abundance and variety of carbohydrate-active enzymes in the human gut microbiota. Nat Rev Microbiol (2013) 2.36
Staphylococcus aureus native valve infective endocarditis: report of 566 episodes from the International Collaboration on Endocarditis Merged Database. Clin Infect Dis (2005) 2.36
Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens. PLoS Genet (2006) 2.35
Evolution from acute Q fever to endocarditis is associated with underlying valvulopathy and age and can be prevented by prolonged antibiotic treatment. Clin Infect Dis (2013) 2.34
Natural history of Bartonella infections (an exception to Koch's postulate). Clin Diagn Lab Immunol (2002) 2.33
Analysis of 525 samples to determine the usefulness of PCR amplification and sequencing of the 16S rRNA gene for diagnosis of bone and joint infections. J Clin Microbiol (2006) 2.30
Rickettsia felis infection acquired in Europe and documented by polymerase chain reaction. Emerg Infect Dis (2002) 2.26
Non-contiguous finished genome sequence and description of Anaerococcus senegalensis sp. nov. Stand Genomic Sci (2012) 2.23
Molecular detection of multiple emerging pathogens in sputa from cystic fibrosis patients. PLoS One (2008) 2.23
Methanomassiliicoccus luminyensis gen. nov., sp. nov., a methanogenic archaeon isolated from human faeces. Int J Syst Evol Microbiol (2012) 2.19
Tropheryma whipplei bacteremia during fever in rural West Africa. Clin Infect Dis (2010) 2.17
Rickettsia slovaca and R. raoultii in tick-borne Rickettsioses. Emerg Infect Dis (2009) 2.16
Fleas and flea-borne diseases. Int J Infect Dis (2010) 2.14
Genome-based design of a cell-free culture medium for Tropheryma whipplei. Lancet (2003) 2.14
Rickettsioses and the international traveler. Clin Infect Dis (2004) 2.13
African tick bite fever in travelers to rural sub-Equatorial Africa. Clin Infect Dis (2003) 2.13
Eukaryotic large nucleo-cytoplasmic DNA viruses: clusters of orthologous genes and reconstruction of viral genome evolution. Virol J (2009) 2.13
The rpoB gene as a tool for clinical microbiologists. Trends Microbiol (2008) 2.12
Validation of partial rpoB gene sequence analysis for the identification of clinically important and emerging Acinetobacter species. Microbiology (2009) 2.11
The genome of Borrelia recurrentis, the agent of deadly louse-borne relapsing fever, is a degraded subset of tick-borne Borrelia duttonii. PLoS Genet (2008) 2.10
Coxiella burnetii in humans and ticks in rural Senegal. PLoS Negl Trop Dis (2010) 2.09
Genetic identification of rickettsiae isolated from ticks in Japan. J Clin Microbiol (2002) 2.08