Published in PLoS One on September 20, 2013
SCOP: a structural classification of proteins database for the investigation of sequences and structures. J Mol Biol (1995) 74.88
CATH--a hierarchic classification of protein domain structures. Structure (1997) 29.95
The relation between the divergence of sequence and structure in proteins. EMBO J (1986) 16.66
SCOP database in 2004: refinements integrate structure and sequence family data. Nucleic Acids Res (2004) 15.21
SCOP: a structural classification of proteins database. Nucleic Acids Res (2000) 14.14
Mapping the protein universe. Science (1996) 13.72
Scoring function for automated assessment of protein structure template quality. Proteins (2004) 10.99
Gene Ontology annotations and resources. Nucleic Acids Res (2012) 6.13
The X-ray crystal structure of the membrane protein prostaglandin H2 synthase-1. Nature (1994) 5.94
JOY: protein sequence-structure representation and analysis. Bioinformatics (1998) 4.10
Definition of general topological equivalence in protein structures. A procedure involving comparison of properties and relationships through simulated annealing and dynamic programming. J Mol Biol (1990) 4.02
Knowledge based modelling of homologous proteins, Part I: Three-dimensional frameworks derived from the simultaneous superposition of multiple structures. Protein Eng (1989) 3.79
Fold change in evolution of protein structures. J Struct Biol (2001) 3.46
A six-stranded double-psi beta barrel is shared by several protein superfamilies. Structure (1999) 2.57
The structure and properties of methylenetetrahydrofolate reductase from Escherichia coli suggest how folate ameliorates human hyperhomocysteinemia. Nat Struct Biol (1999) 2.43
Matt: local flexibility aids protein multiple structure alignment. PLoS Comput Biol (2008) 2.41
Structure of the haemagglutinin-esterase-fusion glycoprotein of influenza C virus. Nature (1998) 2.41
Protein structure comparison: implications for the nature of 'fold space', and structure and function prediction. Curr Opin Struct Biol (2006) 2.37
The stereochemistry of peroxidase catalysis. J Biol Chem (1980) 2.35
Evolution of enzyme superfamilies. Curr Opin Chem Biol (2006) 2.30
Beta-alanine synthesis in Escherichia coli. J Bacteriol (1980) 2.27
Structural diversity of domain superfamilies in the CATH database. J Mol Biol (2006) 2.10
How far divergent evolution goes in proteins. Curr Opin Struct Biol (1998) 2.07
Polo-box domain: a versatile mediator of polo-like kinase function. Cell Mol Life Sci (2010) 1.85
Comparison of solvent-inaccessible cores of homologous proteins: definitions useful for protein modelling. Protein Eng (1987) 1.81
Aminoglycoside-modifying enzymes. Curr Opin Microbiol (1999) 1.78
Similarities of protein topologies: evolutionary divergence, functional convergence or principles of folding? Q Rev Biophys (1980) 1.76
The Sak polo-box comprises a structural domain sufficient for mitotic subcellular localization. Nat Struct Biol (2002) 1.76
X-ray crystal structure and characterization of halide-binding sites of human myeloperoxidase at 1.8 A resolution. J Biol Chem (2000) 1.74
Purification and properties of L-Aspartate-alpha-decarboxylase, an enzyme that catalyzes the formation of beta-alanine in Escherichia coli. J Biol Chem (1979) 1.67
The CATH hierarchy revisited-structural divergence in domain superfamilies and the continuity of fold space. Structure (2009) 1.62
G-SESAME: web tools for GO-term-based gene similarity analysis and knowledge discovery. Nucleic Acids Res (2009) 1.55
Structures of the Escherichia coli PutA proline dehydrogenase domain in complex with competitive inhibitors. Biochemistry (2004) 1.41
PASS2: an automated database of protein alignments organised as structural superfamilies. BMC Bioinformatics (2004) 1.37
CAMPASS: a database of structurally aligned protein superfamilies. Structure (1998) 1.33
Comparative analysis of protein structure alignments. BMC Struct Biol (2007) 1.28
Crystal structure of the ascorbate peroxidase-ascorbate complex. Nat Struct Biol (2003) 1.27
Evolutionary transitions in protein fold space. Curr Opin Struct Biol (2007) 1.19
Structural constraints on protein self-processing in L-aspartate-alpha-decarboxylase. EMBO J (2003) 1.19
The structure and ligand binding properties of the B. subtilis YkoF gene product, a member of a novel family of thiamin/HMP-binding proteins. J Mol Biol (2004) 1.17
The 2.0 A resolution crystal structure of prostaglandin H2 synthase-1: structural insights into an unusual peroxidase. J Mol Biol (2004) 1.13
Exploring the evolution of novel enzyme functions within structurally defined protein superfamilies. PLoS Comput Biol (2012) 1.09
PASS2: a semi-automated database of protein alignments organised as structural superfamilies. Nucleic Acids Res (2002) 1.08
Measuring gene functional similarity based on group-wise comparison of GO terms. Bioinformatics (2013) 1.05
The evolving role of 3D domain swapping in proteins. Structure (2004) 1.05
Degradation of pyrimidines and pyrimidine analogs--pathways and mutual influences. Pharmacol Ther (1980) 1.02
Exploiting structural classifications for function prediction: towards a domain grammar for protein function. Curr Opin Struct Biol (2009) 1.02
Crystal structure of the schiff base intermediate prior to decarboxylation in the catalytic cycle of aspartate alpha-decarboxylase. J Mol Biol (2004) 0.91
PASS2 version 4: an update to the database of structure-based sequence alignments of structural domain superfamilies. Nucleic Acids Res (2011) 0.86
Voltammetric studies of bidirectional catalytic electron transport in Escherichia coli succinate dehydrogenase: comparison with the enzyme from beef heart mitochondria. Biochim Biophys Acta (1999) 0.85
The meaning of alignment: lessons from structural diversity. BMC Bioinformatics (2008) 0.79
The Database of Quantitative Cellular Signaling: management and analysis of chemical kinetic models of signaling networks. Bioinformatics (2003) 2.88
The Caenorhabditis elegans Kinesin-3 motor UNC-104/KIF1A is degraded upon loss of specific binding to cargo. PLoS Genet (2010) 1.04
Defining putative T cell epitopes from PE and PPE families of proteins of Mycobacterium tuberculosis with vaccine potential. Vaccine (2005) 0.88
PASS2 version 4: an update to the database of structure-based sequence alignments of structural domain superfamilies. Nucleic Acids Res (2011) 0.86
Structural attributes for the recognition of weak and anomalous regions in coiled-coils of myosins and other motor proteins. BMC Res Notes (2012) 0.83
Molecular mechanism of dimerization of Bowman-Birk inhibitors. Pivotal role of ASP76 in the dimerzation. J Biol Chem (2004) 0.82
Extracting hydrogen-bond signature patterns from protein structure data. Appl Bioinformatics (2004) 0.79
Proteome profile of a pandemic Vibrio parahaemolyticus SC192 strain in the planktonic and biofilm condition. Biofouling (2014) 0.75
Association of putative members to family of mosquito odorant binding proteins: scoring scheme using fuzzy functional templates and cys residue positions. Bioinform Biol Insights (2013) 0.75