Published in Genet Sel Evol on October 29, 2013
Genomic Regions Associated with Feed Efficiency Indicator Traits in an Experimental Nellore Cattle Population. PLoS One (2016) 1.38
Genome-wide association study for intramuscular fat deposition and composition in Nellore cattle. BMC Genet (2014) 0.91
Genome-wide association study for wool production traits in a Chinese Merino sheep population. PLoS One (2014) 0.85
Non-additive genetic variation in growth, carcass and fertility traits of beef cattle. Genet Sel Evol (2015) 0.84
Detection of quantitative trait loci for mineral content of Nelore longissimus dorsi muscle. Genet Sel Evol (2015) 0.77
Combination analysis of genome-wide association and transcriptome sequencing of residual feed intake in quality chickens. BMC Genomics (2016) 0.75
Genomic Variants Revealed by Invariably Missing Genotypes in Nelore Cattle. PLoS One (2015) 0.75
Genome-wide copy number variation (CNV) detection in Nelore cattle reveals highly frequent variants in genome regions harboring QTLs affecting production traits. BMC Genomics (2016) 0.75
Exploring and Harnessing Haplotype Diversity to Improve Yield Stability in Crops. Front Plant Sci (2017) 0.75
Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis. Nat Genet (2010) 16.96
Genomic selection: prediction of accuracy and maximisation of long term response. Genetica (2008) 8.15
Mitochondrial diversity and the origins of African and European cattle. Proc Natl Acad Sci U S A (1996) 5.55
A fast, powerful method for detecting identity by descent. Am J Hum Genet (2011) 4.26
Linkage disequilibrium and persistence of phase in Holstein-Friesian, Jersey and Angus cattle. Genetics (2008) 4.20
In vivo modulation of Hmgic reduces obesity. Nat Genet (2000) 4.02
The origin of European cattle: evidence from modern and ancient DNA. Proc Natl Acad Sci U S A (2006) 3.09
Microsatellite DNA variation and the evolution, domestication and phylogeography of taurine and zebu cattle (Bos taurus and Bos indicus). Genetics (1997) 2.65
Reliability of genomic predictions across multiple populations. Genetics (2009) 2.46
A validated whole-genome association study of efficient food conversion in cattle. Genetics (2007) 2.23
Accuracy of prediction of genomic breeding values for residual feed intake and carcass and meat quality traits in Bos taurus, Bos indicus, and composite beef cattle. J Anim Sci (2013) 1.47
Evaluation of single-nucleotide polymorphisms in CAPN1 for association with meat tenderness in cattle. J Anim Sci (2002) 1.46
Four loci explain 83% of size variation in the horse. PLoS One (2012) 1.40
Genome-wide association studies for feedlot and growth traits in cattle. J Anim Sci (2011) 1.33
Genome-wide association studies of female reproduction in tropically adapted beef cattle. J Anim Sci (2011) 1.33
Evidence for pleiotropism and recent selection in the PLAG1 region in Australian Beef cattle. Anim Genet (2013) 1.16
A new single nucleotide polymorphism in CAPN1 extends the current tenderness marker test to include cattle of Bos indicus, Bos taurus, and crossbred descent. J Anim Sci (2005) 1.12
Effects of calpastatin and micro-calpain markers in beef cattle on tenderness traits. J Anim Sci (2006) 1.02
Detection of chromosome segments of zebu and taurine origin and their effect on beef production and growth. J Anim Sci (2011) 0.94
Estimated gene frequencies of GeneSTAR markers and their size of effects on meat tenderness, marbling, and feed efficiency in temperate and tropical beef cattle breeds across a range of production systems. J Anim Sci (2010) 0.94
Association of melanocortin 4 receptor (MC4R) and high mobility group AT-hook 1 (HMGA1) polymorphisms with pig growth and fat deposition traits. Anim Genet (2006) 0.94
Inferring the recent ancestry of myostatin alleles affecting muscle mass in cattle. Anim Genet (2012) 0.86
Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds. Science (2009) 7.64
Mapping genes for complex traits in domestic animals and their use in breeding programmes. Nat Rev Genet (2009) 7.25
Recent human effective population size estimated from linkage disequilibrium. Genome Res (2007) 6.79
Predicting unobserved phenotypes for complex traits from whole-genome SNP data. PLoS Genet (2008) 4.57
Novel multilocus measure of linkage disequilibrium to estimate past effective population size. Genome Res (2003) 3.83
Mapping multiple QTL using linkage disequilibrium and linkage analysis information and multitrait data. Genet Sel Evol (2004) 3.34
Genetic architecture of complex traits and accuracy of genomic prediction: coat colour, milk-fat percentage, and type in Holstein cattle as contrasting model traits. PLoS Genet (2010) 3.21
Genome-wide analysis of the world's sheep breeds reveals high levels of historic mixture and strong recent selection. PLoS Biol (2012) 3.19
Accuracy of genomic breeding values in multi-breed dairy cattle populations. Genet Sel Evol (2009) 3.14
Fine mapping of a quantitative trait locus for twinning rate using combined linkage and linkage disequilibrium mapping. Genetics (2002) 3.12
Pitfalls of predicting complex traits from SNPs. Nat Rev Genet (2013) 3.06
LASSO with cross-validation for genomic selection. Genet Res (Camb) (2009) 2.19
Accuracy of genomic selection using stochastic search variable selection in Australian Holstein Friesian dairy cattle. Genet Res (Camb) (2009) 2.05
A dense SNP-based linkage map for Atlantic salmon (Salmo salar) reveals extended chromosome homeologies and striking differences in sex-specific recombination patterns. BMC Genomics (2011) 2.03
A combined long-range phasing and long haplotype imputation method to impute phase for SNP genotypes. Genet Sel Evol (2011) 1.97
A differential wiring analysis of expression data correctly identifies the gene containing the causal mutation. PLoS Comput Biol (2009) 1.96
A comparison of five methods to predict genomic breeding values of dairy bulls from genome-wide SNP markers. Genet Sel Evol (2009) 1.88
Copy number variation and transposable elements feature in recent, ongoing adaptation at the Cyp6g1 locus. PLoS Genet (2010) 1.81
A phasing and imputation method for pedigreed populations that results in a single-stage genomic evaluation. Genet Sel Evol (2012) 1.80
Statistical epistasis is a generic feature of gene regulatory networks. Genetics (2006) 1.72
Multipoint identity-by-descent prediction using dense markers to map quantitative trait loci and estimate effective population size. Genetics (2007) 1.60
Design of a bovine low-density SNP array optimized for imputation. PLoS One (2012) 1.59
Imputation of missing genotypes from sparse to high density using long-range phasing. Genetics (2011) 1.57
A primary assembly of a bovine haplotype block map based on a 15,036-single-nucleotide polymorphism panel genotyped in holstein-friesian cattle. Genetics (2007) 1.44
Polymorphic regions affecting human height also control stature in cattle. Genetics (2011) 1.42
Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project. Genome Biol (2015) 1.40
Beyond differential expression: the quest for causal mutations and effector molecules. BMC Genomics (2012) 1.29
Identification of immune genes and proteins involved in the response of bovine mammary tissue to Staphylococcus aureus infection. BMC Vet Res (2008) 1.22
Genotype calling and mapping of multisite variants using an Atlantic salmon iSelect SNP array. Bioinformatics (2010) 1.19
Accuracy of direct genomic values in Holstein bulls and cows using subsets of SNP markers. Genet Sel Evol (2010) 1.19
Accuracy of imputation to whole-genome sequence data in Holstein Friesian cattle. Genet Sel Evol (2014) 1.17
Transcriptional profiling of skeletal muscle tissue from two breeds of cattle. Mamm Genome (2005) 1.16
A validated genome wide association study to breed cattle adapted to an environment altered by climate change. PLoS One (2009) 1.15
Gene regulatory network inference: evaluation and application to ovarian cancer allows the prioritization of drug targets. Genome Med (2012) 1.14
Genomic selection in livestock populations. Genet Res (Camb) (2010) 1.13
Inferring demography from runs of homozygosity in whole-genome sequence, with correction for sequence errors. Mol Biol Evol (2013) 1.13
Understanding and predicting complex traits: knowledge from cattle. Hum Mol Genet (2012) 1.10
Gene expression studies of developing bovine longissimus muscle from two different beef cattle breeds. BMC Dev Biol (2007) 1.10
Strategies and utility of imputed SNP genotypes for genomic analysis in dairy cattle. BMC Genomics (2012) 1.10
Whole-genome resequencing of two elite sires for the detection of haplotypes under selection in dairy cattle. Proc Natl Acad Sci U S A (2012) 1.08
Identification of a gene network contributing to hypertrophy in callipyge skeletal muscle. Physiol Genomics (2006) 1.07
PCIT: an R package for weighted gene co-expression networks based on partial correlation and information theory approaches. Bioinformatics (2009) 1.05
Prediction of the confidence interval of quantitative trait Loci location. Behav Genet (2004) 1.04
Identification of genomic regions associated with inbreeding depression in Holstein and Jersey dairy cattle. Genet Sel Evol (2014) 1.02
A Boolean-based systems biology approach to predict novel genes associated with cancer: Application to colorectal cancer. BMC Syst Biol (2011) 1.02
Association weight matrix for the genetic dissection of puberty in beef cattle. Proc Natl Acad Sci U S A (2010) 1.01
Multibreed genome wide association can improve precision of mapping causative variants underlying milk production in dairy cattle. BMC Genomics (2014) 1.01
Accuracy of pedigree and genomic predictions of carcass and novel meat quality traits in multi-breed sheep data assessed by cross-validation. Genet Sel Evol (2012) 1.01
Inferring the transcriptional landscape of bovine skeletal muscle by integrating co-expression networks. PLoS One (2009) 1.01
High throughput whole rumen metagenome profiling using untargeted massively parallel sequencing. BMC Genet (2012) 1.00
Candidate genes associated with testicular development, sperm quality, and hormone levels of inhibin, luteinizing hormone, and insulin-like growth factor 1 in Brahman bulls. Biol Reprod (2012) 0.99
Gene expression profiling of bovine in vitro adipogenesis using a cDNA microarray. Funct Integr Genomics (2006) 0.98
Transcription profiling provides insights into gene pathways involved in horn and scurs development in cattle. BMC Genomics (2010) 0.98
Gastrointestinal nematode challenge induces some conserved gene expression changes in the gut mucosa of genetically resistant sheep. Int J Parasitol (2007) 0.98
EST-based gene discovery in pig: virtual expression patterns and comparative mapping to human. Mamm Genome (2003) 0.98
Genomic prediction for rust resistance in diverse wheat landraces. Theor Appl Genet (2014) 0.97
A practical approach for minimising inbreeding and maximising genetic gain in dairy cattle. Genet Sel Evol (2007) 0.96
Quantitative trait locus-by-environment interaction for milk yield traits on Bos taurus autosome 6. Genetics (2008) 0.96
"SNP Snappy": a strategy for fast genome-wide association studies fitting a full mixed model. Genetics (2011) 0.96
Construction and validation of a Bovine Innate Immune Microarray. BMC Genomics (2005) 0.95
Estimating the effect of SNP genotype on quantitative traits from pooled DNA samples. Genet Sel Evol (2012) 0.95
Metagenomic predictions: from microbiome to complex health and environmental phenotypes in humans and cattle. PLoS One (2013) 0.94
Nonlinear regulation enhances the phenotypic expression of trans-acting genetic polymorphisms. BMC Syst Biol (2007) 0.94
Stress-induced gene expression profiling in the black tiger shrimp Penaeus monodon. Physiol Genomics (2007) 0.93
Analysis of copy number variants in the cattle genome. Gene (2011) 0.93
Genes of the RNASE5 pathway contain SNP associated with milk production traits in dairy cattle. Genet Sel Evol (2013) 0.91
Regulatory and coding genome regions are enriched for trait associated variants in dairy and beef cattle. BMC Genomics (2014) 0.91
Linkage disequilibrium over short physical distances measured in sheep using a high-density SNP chip. Anim Genet (2014) 0.90
A systems biology approach using metabolomic data reveals genes and pathways interacting to modulate divergent growth in cattle. BMC Genomics (2013) 0.89
A genomics-informed, SNP association study reveals FBLN1 and FABP4 as contributing to resistance to fleece rot in Australian Merino sheep. BMC Vet Res (2010) 0.88
Bootstrapping of gene-expression data improves and controls the false discovery rate of differentially expressed genes. Genet Sel Evol (2004) 0.88
Selection signature analysis implicates the PC1/PCSK1 region for chicken abdominal fat content. PLoS One (2012) 0.88
Skeletal muscle specific genes networks in cattle. Funct Integr Genomics (2010) 0.87
Chronic exposure to anabolic steroids induces the muscle expression of oxytocin and a more than fiftyfold increase in circulating oxytocin in cattle. Physiol Genomics (2011) 0.87
The use of frozen semen to minimize inbreeding in small populations. Genet Res (2002) 0.87
The IGF1 pathway genes and their association with age of puberty in cattle. Anim Genet (2012) 0.87
Molecular genetic approaches for identifying the basis of variation in resistance to tick infestation in cattle. Vet Parasitol (2011) 0.87
Using regulatory and epistatic networks to extend the findings of a genome scan: identifying the gene drivers of pigmentation in merino sheep. PLoS One (2011) 0.86
Fine-mapping the POLL locus in Brahman cattle yields the diagnostic marker CSAFG29. Anim Genet (2012) 0.85
Differential gene expression of wheat progeny with contrasting levels of transpiration efficiency. Plant Mol Biol (2006) 0.85
High-resolution comparative mapping of pig Chromosome 4, emphasizing the FAT1 region. Mamm Genome (2004) 0.84
Molecular characterization of a long range haplotype affecting protein yield and mastitis susceptibility in Norwegian Red cattle. BMC Genet (2011) 0.83
Bovine proteins containing poly-glutamine repeats are often polymorphic and enriched for components of transcriptional regulatory complexes. BMC Genomics (2010) 0.83
Use of the numerator relationship matrix in genetic analysis of autopolyploid species. Theor Appl Genet (2012) 0.81
From SNP co-association to RNA co-expression: novel insights into gene networks for intramuscular fatty acid composition in porcine. BMC Genomics (2014) 0.81
Evidence for positive selection of taurine genes within a QTL region on chromosome X associated with testicular size in Australian Brahman cattle. BMC Genet (2014) 0.81
Microarray-based detection of viruses causing vesicular or vesicular-like lesions in livestock animals. Vet Microbiol (2008) 0.81
Genetic variants in mammary development, prolactin signalling and involution pathways explain considerable variation in bovine milk production and milk composition. Genet Sel Evol (2014) 0.80
Gene expression profiling of porcine peripheral blood leukocytes after infection with Actinobacillus pleuropneumoniae. Vet Immunol Immunopathol (2007) 0.80
Using a 3D virtual muscle model to link gene expression changes during myogenesis to protein spatial location in muscle. BMC Syst Biol (2008) 0.80