Published in PLoS One on March 28, 2012
Design and characterization of a 52K SNP chip for goats. PLoS One (2014) 1.79
Genotyping-by-sequencing (GBS): a novel, efficient and cost-effective genotyping method for cattle using next-generation sequencing. PLoS One (2013) 1.41
Strategies and utility of imputed SNP genotypes for genomic analysis in dairy cattle. BMC Genomics (2012) 1.10
Genetic diversity, population structure and relationships in indigenous cattle populations of Ethiopia and Korean Hanwoo breeds using SNP markers. Front Genet (2013) 1.04
Development and evaluation of the first high-throughput SNP array for common carp (Cyprinus carpio). BMC Genomics (2014) 0.97
Methods of tagSNP selection and other variables affecting imputation accuracy in swine. BMC Genet (2013) 0.93
Imputation of microsatellite alleles from dense SNP genotypes for parental verification. Front Genet (2012) 0.92
Comparison of SNP variation and distribution in indigenous ethiopian and korean cattle (hanwoo) populations. Genomics Inform (2012) 0.86
Genome-wide association analysis and genomic prediction of Mycobacterium avium subspecies paratuberculosis infection in US Jersey cattle. PLoS One (2014) 0.84
Impact of whole-genome amplification on the reliability of pre-transfer cattle embryo breeding value estimates. BMC Genomics (2014) 0.84
Predicting expected progeny difference for marbling score in Angus cattle using artificial neural networks and Bayesian regression models. Genet Sel Evol (2013) 0.83
Inclusion of cow records in genomic evaluations and impact on bias due to preferential treatment. Genet Sel Evol (2012) 0.83
Impact of genotype imputation on the performance of GBLUP and Bayesian methods for genomic prediction. PLoS One (2014) 0.82
Accuracy of genotype imputation in Nelore cattle. Genet Sel Evol (2014) 0.81
Dominant Red Coat Color in Holstein Cattle Is Associated with a Missense Mutation in the Coatomer Protein Complex, Subunit Alpha (COPA) Gene. PLoS One (2015) 0.80
Comparison of different imputation methods from low- to high-density panels using Chinese Holstein cattle. Animal (2012) 0.80
Error rate for imputation from the Illumina BovineSNP50 chip to the Illumina BovineHD chip. Genet Sel Evol (2014) 0.80
Prospects and limits of marker imputation in quantitative genetic studies in European elite wheat (Triticum aestivum L.). BMC Genomics (2015) 0.79
Fine mapping for Weaver syndrome in Brown Swiss cattle and the identification of 41 concordant mutations across NRCAM, PNPLA8 and CTTNBP2. PLoS One (2013) 0.79
Genome-Wide Study of Structural Variants in Bovine Holstein, Montbéliarde and Normande Dairy Breeds. PLoS One (2015) 0.79
Effects of single nucleotide polymorphism marker density on degree of genetic variance explained and genomic evaluation for carcass traits in Japanese Black beef cattle. BMC Genet (2014) 0.78
Strategies for genotype imputation in composite beef cattle. BMC Genet (2015) 0.77
Genomic relationships based on X chromosome markers and accuracy of genomic predictions with and without X chromosome markers. Genet Sel Evol (2014) 0.76
Use of partial least squares regression to impute SNP genotypes in Italian cattle breeds. Genet Sel Evol (2013) 0.76
Inter- and intra-reproducibility of genotypes from sheep technical replicates on Illumina and Affymetrix platforms. Genet Sel Evol (2016) 0.75
Comparison of three boosting methods in parent-offspring trios for genotype imputation using simulation study. J Anim Sci Technol (2016) 0.75
Construction of a large collection of small genome variations in French dairy and beef breeds using whole-genome sequences. Genet Sel Evol (2016) 0.75
MaGelLAn 1.0: a software to facilitate quantitative and population genetic analysis of maternal inheritance by combination of molecular and pedigree information. Genet Sel Evol (2016) 0.75
Optimal Design of Low-Density SNP Arrays for Genomic Prediction: Algorithm and Applications. PLoS One (2016) 0.75
Clinical utility of the low-density Infinium QC genotyping Array in a genomics-based diagnostics laboratory. BMC Med Genomics (2017) 0.75
Prediction of total genetic value using genome-wide dense marker maps. Genetics (2001) 41.25
A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase. Am J Hum Genet (2006) 28.32
Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds. Science (2009) 7.64
Development and characterization of a high density SNP genotyping assay for cattle. PLoS One (2009) 7.06
Haplotype phasing: existing methods and new developments. Nat Rev Genet (2011) 4.66
Strategy for applying genome-wide selection in dairy cattle. J Anim Breed Genet (2006) 4.63
A hidden markov model combining linkage and linkage disequilibrium information for haplotype reconstruction and quantitative trait locus fine mapping. Genetics (2009) 2.37
Genomic evaluations with many more genotypes. Genet Sel Evol (2011) 2.34
A combined long-range phasing and long haplotype imputation method to impute phase for SNP genotypes. Genet Sel Evol (2011) 1.97
The genomic evaluation system in the United States: past, present, future. J Dairy Sci (2011) 1.63
Imputation of missing genotypes from sparse to high density using long-range phasing. Genetics (2011) 1.57
Effect of imputing markers from a low-density chip on the reliability of genomic breeding values in Holstein populations. J Dairy Sci (2011) 1.47
Imputation of genotypes from different single nucleotide polymorphism panels in dairy cattle. J Dairy Sci (2010) 1.38
Prediction of unobserved single nucleotide polymorphism genotypes of Jersey cattle using reference panels and population-based imputation algorithms. J Dairy Sci (2010) 1.38
Use of the Illumina Bovine3K BeadChip in dairy genomic evaluation. J Dairy Sci (2012) 1.07
Short communication: Imputation performances of 3 low-density marker panels in beef and dairy cattle. J Dairy Sci (2012) 0.99
Deterministic models of breeding scheme designs that incorporate genomic selection. J Dairy Sci (2010) 0.95
Dual origins of dairy cattle farming--evidence from a comprehensive survey of European Y-chromosomal variation. PLoS One (2011) 0.94
The value of using DNA markers for beef bull selection in the seedstock sector. J Anim Sci (2011) 0.85
Accurate whole human genome sequencing using reversible terminator chemistry. Nature (2008) 90.20
SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries. Nat Methods (2008) 8.26
The genome sequence of taurine cattle: a window to ruminant biology and evolution. Science (2009) 8.23
Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds. Science (2009) 7.64
Mapping genes for complex traits in domestic animals and their use in breeding programmes. Nat Rev Genet (2009) 7.25
Development and characterization of a high density SNP genotyping assay for cattle. PLoS One (2009) 7.06
Recent human effective population size estimated from linkage disequilibrium. Genome Res (2007) 6.79
A whole-genome assembly of the domestic cow, Bos taurus. Genome Biol (2009) 5.93
Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis. PLoS Biol (2010) 5.39
Predicting unobserved phenotypes for complex traits from whole-genome SNP data. PLoS Genet (2008) 4.57
Power to detect risk alleles using genome-wide tag SNP panels. PLoS Genet (2007) 3.29
A review on SNP and other types of molecular markers and their use in animal genetics. Genet Sel Evol (2002) 3.22
Pitfalls of predicting complex traits from SNPs. Nat Rev Genet (2013) 3.06
High-resolution haplotype block structure in the cattle genome. BMC Genet (2009) 2.35
Genomic evaluations with many more genotypes. Genet Sel Evol (2011) 2.34
LASSO with cross-validation for genomic selection. Genet Res (Camb) (2009) 2.19
Genetic and haplotypic structure in 14 European and African cattle breeds. Genetics (2007) 2.18
The genome response to artificial selection: a case study in dairy cattle. PLoS One (2009) 2.08
Accuracy of genomic selection using stochastic search variable selection in Australian Holstein Friesian dairy cattle. Genet Res (Camb) (2009) 2.05
Comparative sequence analysis of the X-inactivation center region in mouse, human, and bovine. Genome Res (2002) 2.04
A dense SNP-based linkage map for Atlantic salmon (Salmo salar) reveals extended chromosome homeologies and striking differences in sex-specific recombination patterns. BMC Genomics (2011) 2.03
Analysis of copy number variations among diverse cattle breeds. Genome Res (2010) 2.02
Resolving the evolution of extant and extinct ruminants with high-throughput phylogenomics. Proc Natl Acad Sci U S A (2009) 1.79
Development and evaluation of a 9K SNP array for peach by internationally coordinated SNP detection and validation in breeding germplasm. PLoS One (2012) 1.75
A common reference population from four European Holstein populations increases reliability of genomic predictions. Genet Sel Evol (2011) 1.74
Statistical epistasis is a generic feature of gene regulatory networks. Genetics (2006) 1.72
Improved Lasso for genomic selection. Genet Res (Camb) (2010) 1.65
Copy number variation of individual cattle genomes using next-generation sequencing. Genome Res (2012) 1.62
Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues. Physiol Genomics (2006) 1.58
Imputation of missing genotypes from sparse to high density using long-range phasing. Genetics (2011) 1.57
A physical map of the bovine genome. Genome Biol (2007) 1.56
Quality assessment parameters for EST-derived SNPs from catfish. BMC Genomics (2008) 1.54
Genome-wide association analysis of thirty one production, health, reproduction and body conformation traits in contemporary U.S. Holstein cows. BMC Genomics (2011) 1.52
Genomic characteristics of cattle copy number variations. BMC Genomics (2011) 1.48
Polymorphic regions affecting human height also control stature in cattle. Genetics (2011) 1.42
Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project. Genome Biol (2015) 1.40
Fine mapping of quantitative trait loci affecting female fertility in dairy cattle on BTA03 using a dense single-nucleotide polymorphism map. Genetics (2008) 1.36
MicroRNA transcriptome profiles during swine skeletal muscle development. BMC Genomics (2009) 1.35
A bovine whole-genome radiation hybrid panel and outline map. Mamm Genome (2002) 1.31
Fine-mapping milk production quantitative trait loci on BTA6: analysis of the bovine osteopontin gene. Proc Natl Acad Sci U S A (2005) 1.29
Application of machine learning in SNP discovery. BMC Bioinformatics (2006) 1.28
High-density marker imputation accuracy in sixteen French cattle breeds. Genet Sel Evol (2013) 1.26
Implication of lateral genetic transfer in the emergence of Aeromonas hydrophila isolates of epidemic outbreaks in channel catfish. PLoS One (2013) 1.23
Genotype calling and mapping of multisite variants using an Atlantic salmon iSelect SNP array. Bioinformatics (2010) 1.19
Accuracy of direct genomic values in Holstein bulls and cows using subsets of SNP markers. Genet Sel Evol (2010) 1.19
Accuracy of imputation to whole-genome sequence data in Holstein Friesian cattle. Genet Sel Evol (2014) 1.17
A validated genome wide association study to breed cattle adapted to an environment altered by climate change. PLoS One (2009) 1.15
Novel insights into the bovine polled phenotype and horn ontogenesis in Bovidae. PLoS One (2013) 1.15
Inferring demography from runs of homozygosity in whole-genome sequence, with correction for sequence errors. Mol Biol Evol (2013) 1.13
Genomic selection in livestock populations. Genet Res (Camb) (2010) 1.13
Genomic regions showing copy number variations associate with resistance or susceptibility to gastrointestinal nematodes in Angus cattle. Funct Integr Genomics (2011) 1.13
Prevalence of the prion protein gene E211K variant in U.S. cattle. BMC Vet Res (2008) 1.12
Genome-wide association study for birth weight in Nellore cattle points to previously described orthologous genes affecting human and bovine height. BMC Genet (2013) 1.11
Genomic divergence of zebu and taurine cattle identified through high-density SNP genotyping. BMC Genomics (2013) 1.11
Strategies and utility of imputed SNP genotypes for genomic analysis in dairy cattle. BMC Genomics (2012) 1.10
EST-PAGE--managing and analyzing EST data. Bioinformatics (2004) 1.09
Identification of a nonsense mutation in CWC15 associated with decreased reproductive efficiency in Jersey cattle. PLoS One (2013) 1.08
Whole-genome resequencing of two elite sires for the detection of haplotypes under selection in dairy cattle. Proc Natl Acad Sci U S A (2012) 1.08
Unlocking the bovine genome. BMC Genomics (2009) 1.06
Fine mapping and physical characterization of two linked quantitative trait loci affecting milk fat yield in dairy cattle on BTA26. Genetics (2005) 1.06
An atlas of bovine gene expression reveals novel distinctive tissue characteristics and evidence for improving genome annotation. Genome Biol (2010) 1.06
Congenital syndactyly in cattle: four novel mutations in the low density lipoprotein receptor-related protein 4 gene (LRP4). BMC Genet (2007) 1.06
Fine mapping of copy number variations on two cattle genome assemblies using high density SNP array. BMC Genomics (2012) 1.04
Effect of sample stratification on dairy GWAS results. BMC Genomics (2012) 1.02
Identification of genomic regions associated with inbreeding depression in Holstein and Jersey dairy cattle. Genet Sel Evol (2014) 1.02
Accuracy of pedigree and genomic predictions of carcass and novel meat quality traits in multi-breed sheep data assessed by cross-validation. Genet Sel Evol (2012) 1.01