Published in G3 (Bethesda) on January 10, 2014
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The effect of recombination on the reconstruction of ancestral sequences. Genetics (2010) 1.25
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Analysing recombination in nucleotide sequences. Mol Ecol Resour (2011) 1.18
Phylodynamics of HIV-1 from a phase III AIDS vaccine trial in Bangkok, Thailand. PLoS One (2011) 1.11
Evidence for survival of Pleistocene climatic changes in Northern refugia by the land snail Trochoidea geyeri (Soós 1926) (Helicellinae, Stylommatophora). BMC Evol Biol (2003) 1.10
Non-equilibrium estimates of gene flow inferred from nuclear genealogies suggest that Iberian and North African wall lizards (Podarcis spp.) are an assemblage of incipient species. BMC Evol Biol (2008) 1.02
Recombination favors the evolution of drug resistance in HIV-1 during antiretroviral therapy. Infect Genet Evol (2007) 1.00
Using models of nucleotide evolution to build phylogenetic trees. Dev Comp Immunol (2005) 1.00
Phylogenetic evidence for multiple sympatric ecological diversification in a marine snail. Evolution (2007) 0.97
Phylogeography and diversification history of the day-gecko genus Phelsuma in the Seychelles islands. BMC Evol Biol (2013) 0.96
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Characterization of phylogenetic networks with NetTest. BMC Bioinformatics (2010) 0.95
Lusitania revisited: a phylogeographic analysis of the natterjack toad Bufo calamita across its entire biogeographical range. Mol Phylogenet Evol (2005) 0.95
Cryptic speciation patterns in Iranian rock lizards uncovered by integrative taxonomy. PLoS One (2013) 0.93
Inverted replication of vertebrate mitochondria. Mol Biol Evol (2008) 0.93
Ethnic differences in the adaptation rate of HIV gp120 from a vaccine trial. Retrovirology (2009) 0.93
Identification of 3 phylogenetically related HIV-1 BG intersubtype circulating recombinant forms in Cuba. J Acquir Immune Defic Syndr (2007) 0.92
Identification of a novel HIV-1 complex circulating recombinant form (CRF18_cpx) of Central African origin in Cuba. AIDS (2005) 0.91
Molecular assessment of Hepatozoon (Apicomplexa: Adeleorina) infections in wild canids and rodents from north Africa, with implications for transmission dynamics across taxonomic groups. J Wildl Dis (2014) 0.89
Persistence across Pleistocene ice ages in Mediterranean and extra-Mediterranean refugia: phylogeographic insights from the common wall lizard. BMC Evol Biol (2013) 0.89
jmodeltest.org: selection of nucleotide substitution models on the cloud. Bioinformatics (2014) 0.89
Disease progression and evolution of the HIV-1 env gene in 24 infected infants. Infect Genet Evol (2007) 0.87
Widespread gene conversion of alpha-2-fucosyltransferase genes in mammals. J Mol Evol (2009) 0.87
Phylodynamics of HIV-1 from a phase-III AIDS vaccine trial in North America. Mol Biol Evol (2009) 0.87
Protein evolution along phylogenetic histories under structurally constrained substitution models. Bioinformatics (2013) 0.87
Lack of temporal structure in the short term HIV-1 evolution within asymptomatic naïve patients. Virology (2007) 0.87
Simulation of genome-wide evolution under heterogeneous substitution models and complex multispecies coalescent histories. Mol Biol Evol (2014) 0.87
Genome-wide heterogeneity of nucleotide substitution model fit. Genome Biol Evol (2011) 0.86
Mitochondrial phylogeography of the Bedriaga's rock lizard, Archaeolacerta bedriagae (Reptilia: Lacertidae) endemic to Corsica and Sardinia. Mol Phylogenet Evol (2010) 0.86
Molecular survey of Hepatozoon species in lizards from North Africa. J Parasitol (2010) 0.86
Computational design of centralized HIV-1 genes. Curr HIV Res (2010) 0.85
A phylogenetic assessment of the colonisation patterns in Spauligodon atlanticus Astasio-Arbiza et al., 1987 (Nematoda: Oxyurida: Pharyngodonidae), a parasite of lizards of the genus Gallotia Boulenger: no simple answers. Syst Parasitol (2011) 0.85
Diversity and phylogenetic relationships of Hemidactylus geckos from the Comoro islands. Mol Phylogenet Evol (2005) 0.85
Surfing in tortoises? Empirical signs of genetic structuring owing to range expansion. Biol Lett (2013) 0.85
Reexamination of the Iberian and North African Podarcis (Squamata: Lacertidae) phylogeny based on increased mitochondrial DNA sequencing. Mol Phylogenet Evol (2005) 0.85
Phylogeny of North African Agama lizards (Reptilia: Agamidae) and the role of the Sahara desert in vertebrate speciation. Mol Phylogenet Evol (2012) 0.85
Characterization of reticulate networks based on the coalescent with recombination. Mol Biol Evol (2008) 0.84
A new species of Spauligodon (Nematoda: Oxyurida: Pharyngodonidae) in geckos from São Nicolau Island (Cape Verde) and its phylogenetic assessment. J Parasitol (2011) 0.84
Genetic polymorphism of 11 allozyme loci in populations of wall lizards (Podarcis sp.) from the Iberian Peninsula and North Africa. Biochem Genet (2003) 0.83
Hares on thin ice: introgression of mitochondrial DNA in hares and its implications for recent phylogenetic analyses. Mol Phylogenet Evol (2006) 0.83
Molecular survey and microscopic examination of Hepatozoon Miller, 1908 (Apicomplexa: Adeleorina) in lacertid lizards from the western Mediterranean. Folia Parasitol (Praha) (2012) 0.83
Individual sequence variability and functional activities of fibrinogen-related proteins (FREPs) in the Mediterranean mussel (Mytilus galloprovincialis) suggest ancient and complex immune recognition models in invertebrates. Dev Comp Immunol (2010) 0.82
Phylogenetic relationships of Hemidactylus geckos from the Gulf of Guinea islands: patterns of natural colonizations and anthropogenic introductions estimated from mitochondrial and nuclear DNA sequences. Mol Phylogenet Evol (2005) 0.82
Longitudinal population analysis of dual infection with recombination in two strains of HIV type 1 subtype B in an individual from a Phase 3 HIV vaccine efficacy trial. AIDS Res Hum Retroviruses (2006) 0.82
Phylogenetic affinities of Comoroan and East African day geckos (genus Phelsuma): multiple natural colonisations, introductions and island radiations. Mol Phylogenet Evol (2006) 0.81
Proving universal common ancestry with similar sequences. Trends Evol Biol (2012) 0.81
HIV-1 infected monozygotic twins: a tale of two outcomes. BMC Evol Biol (2011) 0.81
Extreme genetic diversity in the lizard Atlantolacerta andreanskyi (Werner, 1929): a montane cryptic species complex. BMC Evol Biol (2012) 0.81
Molecular assessment of apicomplexan parasites in the snake Psammophis from North Africa: do multiple parasite lineages reflect the final vertebrate host diet? J Parasitol (2013) 0.80
The evolution of the mitochondrial genetic code in arthropods revisited. Mitochondrial DNA (2012) 0.80
New approach to an old problem: Incorporating signal from gap-rich regions of ITS and rDNA large subunit into phylogenetic analyses to resolve the Peltigera canina species complex. Mycologia (2010) 0.80
On the phylogenetic placement of human T cell leukemia virus type 1 sequences associated with an Andean mummy. Infect Genet Evol (2005) 0.79
Why are Red List species not on the EDGE? A response to Winter et al. Trends Ecol Evol (2013) 0.79
Systematic and phylogeographical assessment of the Acanthodactylus erythrurus group (Reptilia: Lacertidae) based on phylogenetic analyses of mitochondrial and nuclear DNA. Mol Phylogenet Evol (2008) 0.79
Hepatozoon infection prevalence in four snake genera: influence of diet, prey parasitemia levels, or parasite type? J Parasitol (2012) 0.79
Detection and reduction of microaggregates in insulin preparations. Biotechnol Bioeng (2011) 0.78
Molecular phylogeny, biogeography and insights into the origin of parthenogenesis in the Neotropical genus Leposoma (Squamata: Gymnophthalmidae): Ancient links between the Atlantic Forest and Amazonia. Mol Phylogenet Evol (2011) 0.77
Evolutionary history of the Maltese wall lizard Podarcis filfolensis: insights on the ‘Expansion–Contraction’ model of Pleistocene biogeography. Mol Ecol (2014) 0.77
Insights into origins of Human T-cell Lymphotropic Virus Type 1 based on new strains from aboriginal people of Canada. Infect Genet Evol (2012) 0.77
Molecular phylogeny and biogeographic history of the European Maja spider crabs (Decapoda, Majidae). Mol Phylogenet Evol (2009) 0.76
Genetic code prediction for metazoan mitochondria with GenDecoder. Methods Mol Biol (2009) 0.76
Phylogeography of Mabuya maculilabris (Reptilia) from São Tomé Island (Gulf of Guinea) inferred from mtDNA sequences. Mol Phylogenet Evol (2005) 0.76
Mitochondrial gene rearrangements and partial genome duplications detected by multigene asymmetric compositional bias analysis. J Mol Evol (2006) 0.75
Base-pairing versatility determines wobble sites in tRNA anticodons of vertebrate mitogenomes. PLoS One (2012) 0.75
Correction: A First Insight into the Genome of the Filter-Feeder Mussel Mytilus galloprovincialis. PLoS One (2016) 0.75
Grid selection of models of nucleotide substitution. Stud Health Technol Inform (2010) 0.75
Relationships of Afroablepharus Greer, 1974 skinks from the Gulf of Guinea islands based on mitochondrial and nuclear DNA: patterns of colonization and comments on taxonomy. Mol Phylogenet Evol (2007) 0.75
Flow-induced 2D protein crystallization: characterization of the coupled interfacial and bulk flows. Soft Matter (2015) 0.75
Phylogeography of Drosophila subobscura from North Atlantic islands inferred from mtDNA A+T rich region sequences. Mol Phylogenet Evol (2004) 0.75
Apicomplexa primers amplify Proteromonas (Stramenopiles, Slopalinida, Proteromonadidae) in tissue and blood samples from lizards. Acta Parasitol (2012) 0.75