Genome sequencing of Giardia lamblia genotypes A2 and B isolates (DH and GS) and comparative analysis with the genomes of genotypes A1 and E (WB and Pig).

PubWeight™: 0.93‹?›

🔗 View Article (PMC 3879983)

Published in Genome Biol Evol on January 01, 2013

Authors

Rodney D Adam1, Eric W Dahlstrom, Craig A Martens, Daniel P Bruno, Kent D Barbian, Stacy M Ricklefs, Matthew M Hernandez, Nirmala P Narla, Rima B Patel, Stephen F Porcella, Theodore E Nash

Author Affiliations

1: Departments of Medicine and Immunobiology, University of Arizona College of Medicine.

Articles citing this

Advances in understanding Giardia: determinants and mechanisms of chronic sequelae. F1000Prime Rep (2015) 0.90

First genotyping of Giardia duodenalis and prevalence of enteroparasites in children from Tetouan (Morocco). Parasite (2014) 0.83

Disruptions of Host Immunity and Inflammation by Giardia Duodenalis: Potential Consequences for Co-Infections in the Gastro-Intestinal Tract. Pathogens (2015) 0.80

Molecular Genotyping of Giardia duodenalis Isolates from Symptomatic Individuals Attending Two Major Public Hospitals in Madrid, Spain. PLoS One (2015) 0.79

Comparative genomic analyses of freshly isolated Giardia intestinalis assemblage A isolates. BMC Genomics (2015) 0.78

Giardia spp. Are Commonly Found in Mixed Assemblages in Surface Water, as Revealed by Molecular and Whole-Genome Characterization. Appl Environ Microbiol (2015) 0.78

Spatial and Molecular Epidemiology of Giardia intestinalis Deep in the Amazon, Brazil. PLoS One (2016) 0.77

Secondary loss of a cis-spliced intron during the divergence of Giardia intestinalis assemblages. BMC Res Notes (2014) 0.75

The protein subunit of telomerase displays patterns of dynamic evolution and conservation across different metazoan taxa. BMC Evol Biol (2017) 0.75

Molecular Characterization of Giardia lamblia: First Report of Assemblage B in Human Isolates from Rio de Janeiro (Brazil). PLoS One (2016) 0.75

Constitutive aneuploidy and genomic instability in the single-celled eukaryote Giardia intestinalis. Microbiologyopen (2016) 0.75

Giardia: a pathogen or commensal for children in high-prevalence settings? Curr Opin Infect Dis (2016) 0.75

Giardia Colonizes and Encysts in High-Density Foci in the Murine Small Intestine. mSphere (2017) 0.75

Articles cited by this

MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics (2003) 130.85

MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics (2001) 101.31

Mauve: multiple alignment of conserved genomic sequence with rearrangements. Genome Res (2004) 28.63

Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracis. Nature (2003) 7.05

Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference. Bioinformatics (2004) 6.88

Axenic culture of Giardia lamblia in TYI-S-33 medium supplemented with bile. Trans R Soc Trop Med Hyg (1983) 6.66

Genomic minimalism in the early diverging intestinal parasite Giardia lamblia. Science (2007) 5.69

The genome sequence of the facultative intracellular pathogen Brucella melitensis. Proc Natl Acad Sci U S A (2001) 5.39

Biology of Giardia lamblia. Clin Microbiol Rev (2001) 5.35

The genome of the protist parasite Entamoeba histolytica. Nature (2005) 5.33

Choosing BLAST options for better detection of orthologs as reciprocal best hits. Bioinformatics (2007) 3.49

Genome sequence and analysis of the oral bacterium Fusobacterium nucleatum strain ATCC 25586. J Bacteriol (2002) 3.18

Restriction-endonuclease analysis of DNA from 15 Giardia isolates obtained from humans and animals. J Infect Dis (1985) 2.64

Experimental human infections with Giardia lamblia. J Infect Dis (1987) 2.42

Molecular epidemiology of giardiasis. Mol Biochem Parasitol (2008) 2.22

Population genetics provides evidence for recombination in Giardia. Curr Biol (2007) 2.13

The genome of Borrelia recurrentis, the agent of deadly louse-borne relapsing fever, is a degraded subset of tick-borne Borrelia duttonii. PLoS Genet (2008) 2.10

Draft genome sequencing of giardia intestinalis assemblage B isolate GS: is human giardiasis caused by two different species? PLoS Pathog (2009) 1.97

Giardia assemblage A infection and diarrhea in Bangladesh. J Infect Dis (2005) 1.70

Differences in excretory-secretory products and surface antigens among 19 isolates of Giardia. J Infect Dis (1985) 1.63

Giardia lamblia infections in adult mice. Infect Immun (1994) 1.61

Episomal and integrated maintenance of foreign DNA in Giardia lamblia. Mol Biochem Parasitol (1998) 1.57

Rapid reinfection by Giardia lamblia after treatment in a hyperendemic Third World community. Lancet (1988) 1.51

Surface antigenic variation in Giardia lamblia. Mol Microbiol (2002) 1.40

A systematic review and meta-analysis of the association between Giardia lamblia and endemic pediatric diarrhea in developing countries. Clin Infect Dis (2012) 1.35

Asymptomatic giardiasis and growth in young children; a longitudinal study in Salvador, Brazil. Parasitology (2005) 1.30

The molecular epidemiology of Giardia lamblia: a sequence-based approach. J Infect Dis (1996) 1.29

The Giardia lamblia trophozoite contains sets of closely related chromosomes. Nucleic Acids Res (1988) 1.29

Variant specific epitopes of Giardia lamblia. Mol Biochem Parasitol (1990) 1.26

Genome reduction in the alpha-Proteobacteria. Curr Opin Microbiol (2005) 1.25

Lack of an adverse effect of Giardia intestinalis infection on the health of Peruvian children. Am J Epidemiol (2008) 1.24

Continuing evolution of Burkholderia mallei through genome reduction and large-scale rearrangements. Genome Biol Evol (2010) 1.24

Genome analysis and comparative genomics of a Giardia intestinalis assemblage E isolate. BMC Genomics (2010) 1.24

Candidate antigens for Q fever serodiagnosis revealed by immunoscreening of a Coxiella burnetii protein microarray. Clin Vaccine Immunol (2008) 1.22

Telomeric location of Giardia rDNA genes. Mol Cell Biol (1991) 1.22

Giardiasis as a predictor of childhood malnutrition in Orang Asli children in Malaysia. Trans R Soc Trop Med Hyg (2005) 1.21

Chromosome-size variation in Giardia lamblia: the role of rDNA repeats. Nucleic Acids Res (1992) 1.20

Ongoing genome reduction in Mycobacterium ulcerans. Emerg Infect Dis (2007) 1.16

Frequency of variant antigens in Giardia lamblia. Exp Parasitol (1990) 1.16

Host immunity and pathogen strain contribute to intestinal disaccharidase impairment following gut infection. J Immunol (2011) 1.07

Comparison of two antigenically distinct Giardia lamblia isolates in gerbils. Am J Trop Med Hyg (1987) 1.05

Epidemiology and serology of Giardia lamblia in a developing country: Bangladesh. Trans R Soc Trop Med Hyg (1985) 1.04

Molecular analysis of household transmission of Giardia lamblia in a region of high endemicity in Peru. J Infect Dis (2010) 1.01

Effects of giardiasis on school success, weight and height indices of primary school children in Turkey. Pediatr Int (2005) 0.97

The Giardia lamblia vsp gene repertoire: characteristics, genomic organization, and evolution. BMC Genomics (2010) 0.96

Characterisation of the subtelomeric regions of Giardia lamblia genome isolate WBC6. Int J Parasitol (2006) 0.93

Intrinsic susceptibility of Giardia duodenalis assemblage subtypes A(I), A(II), B and E(III) for nitric oxide under axenic culture conditions. Parasitol Res (2011) 0.77

Sequencing and analysis of chromosomal extremities of Trypanosoma rangeli in comparison with Trypanosoma cruzi lineages. Parasitol Res (2010) 0.77

Optical map of the genotype A1 WB C6 Giardia lamblia genome isolate. Mol Biochem Parasitol (2011) 0.76

Articles by these authors

Insights into mechanisms used by Staphylococcus aureus to avoid destruction by human neutrophils. J Immunol (2005) 5.18

Genome sequence of a serotype M3 strain of group A Streptococcus: phage-encoded toxins, the high-virulence phenotype, and clone emergence. Proc Natl Acad Sci U S A (2002) 5.07

Genome sequence and comparative microarray analysis of serotype M18 group A Streptococcus strains associated with acute rheumatic fever outbreaks. Proc Natl Acad Sci U S A (2002) 4.85

Pulmonary nontuberculous mycobacterial disease: prospective study of a distinct preexisting syndrome. Am J Respir Crit Care Med (2008) 4.33

Genome-wide analysis of synonymous single nucleotide polymorphisms in Mycobacterium tuberculosis complex organisms: resolution of genetic relationships among closely related microbial strains. Genetics (2002) 4.11

Genetic loci associated with delayed clearance of Plasmodium falciparum following artemisinin treatment in Southeast Asia. Proc Natl Acad Sci U S A (2012) 4.10

Evolutionary origin and emergence of a highly successful clone of serotype M1 group a Streptococcus involved multiple horizontal gene transfer events. J Infect Dis (2005) 3.89

Virulence control in group A Streptococcus by a two-component gene regulatory system: global expression profiling and in vivo infection modeling. Proc Natl Acad Sci U S A (2002) 3.83

Analysis of genetic linkage of HIV from couples enrolled in the HIV Prevention Trials Network 052 trial. J Infect Dis (2011) 3.78

Current consensus guidelines for treatment of neurocysticercosis. Clin Microbiol Rev (2002) 3.37

Molecular genetic anatomy of inter- and intraserotype variation in the human bacterial pathogen group A Streptococcus. Proc Natl Acad Sci U S A (2006) 3.33

Antigenic variation by Borrelia hermsii occurs through recombination between extragenic repetitive elements on linear plasmids. Mol Microbiol (2006) 2.91

Extracellular deoxyribonuclease made by group A Streptococcus assists pathogenesis by enhancing evasion of the innate immune response. Proc Natl Acad Sci U S A (2005) 2.84

Comparative genomic analysis of Chlamydia trachomatis oculotropic and genitotropic strains. Infect Immun (2005) 2.72

Molecular dissection of the evolution of carbapenem-resistant multilocus sequence type 258 Klebsiella pneumoniae. Proc Natl Acad Sci U S A (2014) 2.56

Plasmodium falciparum genome-wide scans for positive selection, recombination hot spots and resistance to antimalarial drugs. Nat Genet (2010) 2.48

Longitudinal analysis of the group A Streptococcus transcriptome in experimental pharyngitis in cynomolgus macaques. Proc Natl Acad Sci U S A (2005) 2.45

Genome sequence of a serotype M28 strain of group a streptococcus: potential new insights into puerperal sepsis and bacterial disease specificity. J Infect Dis (2005) 2.45

Comparative genomics reveal extensive transposon-mediated genomic plasticity and diversity among potential effector proteins within the genus Coxiella. Infect Immun (2008) 2.38

Host cell-free growth of the Q fever bacterium Coxiella burnetii. Proc Natl Acad Sci U S A (2009) 2.38

The Chlamydia trachomatis plasmid is a transcriptional regulator of chromosomal genes and a virulence factor. Infect Immun (2008) 2.34

Genome-wide molecular dissection of serotype M3 group A Streptococcus strains causing two epidemics of invasive infections. Proc Natl Acad Sci U S A (2004) 2.32

Progress toward characterization of the group A Streptococcus metagenome: complete genome sequence of a macrolide-resistant serotype M6 strain. J Infect Dis (2004) 2.29

New concepts in the diagnosis and management of neurocysticercosis (Taenia solium). Am J Trop Med Hyg (2005) 2.10

Group A Streptococcus transcriptome dynamics during growth in human blood reveals bacterial adaptive and survival strategies. Am J Pathol (2005) 2.05

Intracellular biology and virulence determinants of Francisella tularensis revealed by transcriptional profiling inside macrophages. Cell Microbiol (2009) 2.00

Identification of a highly transmissible animal-independent Staphylococcus aureus ST398 clone with distinct genomic and cell adhesion properties. MBio (2012) 2.00

Previously transmitted HIV-1 strains are preferentially selected during subsequent sexual transmissions. J Infect Dis (2012) 2.00

Neurocysticercosis: neglected but not forgotten. PLoS Negl Trop Dis (2012) 1.95

Chlamydia trachomatis plasmid-encoded Pgp4 is a transcriptional regulator of virulence-associated genes. Infect Immun (2013) 1.82

Phylogenetic analysis of the spirochetes Borrelia parkeri and Borrelia turicatae and the potential for tick-borne relapsing fever in Florida. J Clin Microbiol (2005) 1.82

Simultaneous high-resolution analysis of vaccinia virus and host cell transcriptomes by deep RNA sequencing. Proc Natl Acad Sci U S A (2010) 1.72

Molecular differentiation of historic phage-type 80/81 and contemporary epidemic Staphylococcus aureus. Proc Natl Acad Sci U S A (2011) 1.70

Adaptive response of Yersinia pestis to extracellular effectors of innate immunity during bubonic plague. Proc Natl Acad Sci U S A (2006) 1.66

Identification of HIV superinfection in seroconcordant couples in Rakai, Uganda, by use of next-generation deep sequencing. J Clin Microbiol (2011) 1.61

Diversity and distribution of Borrelia hermsii. Emerg Infect Dis (2007) 1.55

A mutation in the leptin receptor is associated with Entamoeba histolytica infection in children. J Clin Invest (2011) 1.55

Analysis of the transcriptome of group A Streptococcus in mouse soft tissue infection. Am J Pathol (2006) 1.53

Group A Streptococcus gene expression in humans and cynomolgus macaques with acute pharyngitis. Infect Immun (2003) 1.53

Genome sequence of a Lancefield group C Streptococcus zooepidemicus strain causing epidemic nephritis: new information about an old disease. PLoS One (2008) 1.49

Structure and distribution of an unusual chimeric genetic element encoding macrolide resistance in phylogenetically diverse clones of group A Streptococcus. J Infect Dis (2003) 1.49

The rates of HIV superinfection and primary HIV incidence in a general population in Rakai, Uganda. J Infect Dis (2012) 1.49

Glycerol-3-phosphate acquisition in spirochetes: distribution and biological activity of glycerophosphodiester phosphodiesterase (GlpQ) among Borrelia species. J Bacteriol (2003) 1.47

Genomic comparison of virulent Rickettsia rickettsii Sheila Smith and avirulent Rickettsia rickettsii Iowa. Infect Immun (2007) 1.46

Genetic diversity of the Q fever agent, Coxiella burnetii, assessed by microarray-based whole-genome comparisons. J Bacteriol (2006) 1.43

Characterization of the Bhanja serogroup viruses (Bunyaviridae): a novel species of the genus Phlebovirus and its relationship with other emerging tick-borne phleboviruses. J Virol (2013) 1.43

Cysticerci-related single parenchymal brain enhancing lesions in non-endemic countries. J Neurol Sci (2012) 1.42

Susceptibilities of nonhuman primates to chronic wasting disease. Emerg Infect Dis (2009) 1.33

Complete nucleotide sequence analysis of plasmids in strains of Staphylococcus aureus clone USA300 reveals a high level of identity among isolates with closely related core genome sequences. J Clin Microbiol (2010) 1.32

Induction of Salmonella pathogenicity island 1 under different growth conditions can affect Salmonella-host cell interactions in vitro. Microbiology (2009) 1.28

Recurrent Granulibacter bethesdensis infections and chronic granulomatous disease. Emerg Infect Dis (2010) 1.27

The activity of a developmentally regulated cysteine proteinase is required for cyst wall formation in the primitive eukaryote Giardia lamblia. J Biol Chem (2001) 1.27

Genome sequence analysis of the emerging human pathogenic acetic acid bacterium Granulibacter bethesdensis. J Bacteriol (2007) 1.23

Candidate antigens for Q fever serodiagnosis revealed by immunoscreening of a Coxiella burnetii protein microarray. Clin Vaccine Immunol (2008) 1.22

Expression profiling of the intermediate and late stages of poxvirus replication. J Virol (2011) 1.20

Cationic amino acid transporter-2 regulates immunity by modulating arginase activity. PLoS Pathog (2008) 1.19

Characterization, kinetics, and crystal structures of fructose-1,6-bisphosphate aldolase from the human parasite, Giardia lamblia. J Biol Chem (2006) 1.19

Genome-wide analysis of the 5' and 3' ends of vaccinia virus early mRNAs delineates regulatory sequences of annotated and anomalous transcripts. J Virol (2011) 1.19

Engagement of the pathogen survival response used by group A Streptococcus to avert destruction by innate host defense. J Immunol (2004) 1.17

Comparison of a high-resolution melting assay to next-generation sequencing for analysis of HIV diversity. J Clin Microbiol (2012) 1.17

IL-17-induced NF-kappaB activation via CIKS/Act1: physiologic significance and signaling mechanisms. J Biol Chem (2011) 1.16

Short report: A calcified Taenia solium granuloma associated with recurrent perilesional edema causing refractory seizures: histopathological features. Am J Trop Med Hyg (2011) 1.15

miR-182 and miR-10a are key regulators of Treg specialisation and stability during Schistosome and Leishmania-associated inflammation. PLoS Pathog (2013) 1.11

Brucella modulates secretory trafficking via multiple type IV secretion effector proteins. PLoS Pathog (2013) 1.09

Large linear plasmids of Borrelia species that cause relapsing fever. J Bacteriol (2013) 1.09

Role of sulfated glycans in adherence of the microsporidian Encephalitozoon intestinalis to host cells in vitro. Infect Immun (2005) 1.08

Granulibacter bethesdensis gen. nov., sp. nov., a distinctive pathogenic acetic acid bacterium in the family Acetobacteraceae. Int J Syst Evol Microbiol (2006) 1.07

Purine salvage pathways among Borrelia species. Infect Immun (2007) 1.06

Geographic distribution and genetic characterization of Lassa virus in sub-Saharan Mali. PLoS Negl Trop Dis (2013) 1.06

Transcriptomic and innate immune responses to Yersinia pestis in the lymph node during bubonic plague. Infect Immun (2010) 1.05

Adaptor protein complex 1 mediates the transport of lysosomal proteins from a Golgi-like organelle to peripheral vacuoles in the primitive eukaryote Giardia lamblia. Mol Biol Cell (2004) 1.04

Insight into the Sialome of the Bed Bug, Cimex lectularius. J Proteome Res (2010) 1.04

A novel palmitoyl acyl transferase controls surface protein palmitoylation and cytotoxicity in Giardia lamblia. Mol Microbiol (2005) 1.03

Encystation-specific regulation of the cyst wall protein 2 gene in Giardia lamblia by multiple cis-acting elements. Int J Parasitol (2003) 1.01