Published in BMC Genomics on December 27, 2013
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Surface protein IsdC and Sortase B are required for heme-iron scavenging of Bacillus anthracis. J Bacteriol (2006) 1.59
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Genome-wide analyses reveal lineage specific contributions of positive selection and recombination to the evolution of Listeria monocytogenes. BMC Evol Biol (2008) 1.41
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Pervasive, genome-wide positive selection leading to functional divergence in the bacterial genus Campylobacter. Genome Res (2009) 1.15
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Comparative genomic analysis of the Streptococcus dysgalactiae species group: gene content, molecular adaptation, and promoter evolution. Genome Biol Evol (2011) 1.11
The glpP and glpF genes of the glycerol regulon in Bacillus subtilis. J Gen Microbiol (1993) 1.07
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Regulation of Escherichia coli hchA, a stress-inducible gene encoding molecular chaperone Hsp31. Mol Microbiol (2006) 1.02
Distribution of virulence-associated genes in Yersinia enterocolitica biovar 1A correlates with clonal groups and not the source of isolation. FEMS Microbiol Lett (2007) 1.01
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WSPMaker: a web tool for calculating selection pressure in proteins and domains using window-sliding. BMC Bioinformatics (2008) 0.93
A new method for estimating nonsynonymous substitutions and its applications to detecting positive selection. Mol Biol Evol (2005) 0.92
Reduced virulence of an fliC mutant of Shiga-toxigenic Escherichia coli O113:H21. Infect Immun (2006) 0.90
JCoDA: a tool for detecting evolutionary selection. BMC Bioinformatics (2010) 0.88
A compendium of antibiotic-induced transcription profiles reveals broad regulation of Pasteurella multocida virulence genes. Vet Microbiol (2008) 0.87
The yddV-dos operon controls biofilm formation through the regulation of genes encoding curli fibers' subunits in aerobically growing Escherichia coli. FEMS Immunol Med Microbiol (2010) 0.82
Selection on the protein-coding genome. Methods Mol Biol (2012) 0.81
Regulation of the nfsA Gene in Escherichia coli by SoxS. J Bacteriol (2002) 0.81
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RG7204 (PLX4032), a selective BRAFV600E inhibitor, displays potent antitumor activity in preclinical melanoma models. Cancer Res (2010) 4.70
DEG: a database of essential genes. Nucleic Acids Res (2004) 2.42
Antitumor activity of BRAF inhibitor vemurafenib in preclinical models of BRAF-mutant colorectal cancer. Cancer Res (2011) 2.22
Enhanced 2,3-butanediol production by Klebsiella pneumoniae SDM. Appl Microbiol Biotechnol (2008) 1.92
TADB: a web-based resource for Type 2 toxin-antitoxin loci in bacteria and archaea. Nucleic Acids Res (2010) 1.83
Complete genome sequence of Klebsiella pneumoniae subsp. pneumoniae HS11286, a multidrug-resistant strain isolated from human sputum. J Bacteriol (2012) 1.77
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ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria. Nucleic Acids Res (2011) 1.62
Analysis of a genomic island housing genes for DNA S-modification system in Streptomyces lividans 66 and its counterparts in other distantly related bacteria. Mol Microbiol (2007) 1.53
Non-sterilized fermentative production of polymer-grade L-lactic acid by a newly isolated thermophilic strain Bacillus sp. 2-6. PLoS One (2009) 1.46
Analysis of dermatologic events in vemurafenib-treated patients with melanoma. Oncologist (2013) 1.41
Listening to a new language: DSF-based quorum sensing in Gram-negative bacteria. Chem Rev (2010) 1.32
The Z curve database: a graphic representation of genome sequences. Bioinformatics (2003) 1.31
Overexpression of WISP-1 down-regulated motility and invasion of lung cancer cells through inhibition of Rac activation. J Biol Chem (2003) 1.29
Role and regulation of fatty acid biosynthesis in the response of Shewanella piezotolerans WP3 to different temperatures and pressures. J Bacteriol (2009) 1.28
Cleavage of phosphorothioated DNA and methylated DNA by the type IV restriction endonuclease ScoMcrA. PLoS Genet (2010) 1.27
ATPase genes of diverse multidrug-resistant Acinetobacter baumannii isolates frequently harbour integrated DNA. J Antimicrob Chemother (2008) 1.17
Complete genome sequence of the nicotine-degrading Pseudomonas putida strain S16. J Bacteriol (2011) 1.15
Genome sequence of Pseudomonas stutzeri SDM-LAC, a typical strain for studying the molecular mechanism of lactate utilization. J Bacteriol (2012) 1.14
Biocatalytic production of (2S,3S)-2,3-butanediol from diacetyl using whole cells of engineered Escherichia coli. Bioresour Technol (2011) 1.11
Pathogenicity islands PAPI-1 and PAPI-2 contribute individually and synergistically to the virulence of Pseudomonas aeruginosa strain PA14. Infect Immun (2010) 1.10
Enantioselective oxidation of racemic lactic acid to D-lactic acid and pyruvic acid by Pseudomonas stutzeri SDM. Bioresour Technol (2008) 1.10
Efficient production of L-lactic acid from corncob molasses, a waste by-product in xylitol production, by a newly isolated xylose utilizing Bacillus sp. strain. Bioresour Technol (2010) 1.10
FDG-PET is a good biomarker of both early response and acquired resistance in BRAFV600 mutant melanomas treated with vemurafenib and the MEK inhibitor GDC-0973. EJNMMI Res (2012) 1.08
Efficient 2,3-butanediol production from cassava powder by a crop-biomass-utilizer, Enterobacter cloacae subsp. dissolvens SDM. PLoS One (2012) 1.05
Genome sequences of two thermophilic Bacillus licheniformis strains, efficient producers of platform chemical 2,3-butanediol. J Bacteriol (2012) 1.04
Glycerol dehydrogenase plays a dual role in glycerol metabolism and 2,3-butanediol formation in Klebsiella pneumoniae. J Biol Chem (2014) 1.03
Genome sequence of Enterobacter cloacae subsp. dissolvens SDM, an efficient biomass-utilizing producer of platform chemical 2,3-butanediol. J Bacteriol (2012) 1.03
Highly efficient production of D-lactate by Sporolactobacillus sp. CASD with simultaneous enzymatic hydrolysis of peanut meal. Appl Microbiol Biotechnol (2010) 1.02
sRNAscanner: a computational tool for intergenic small RNA detection in bacterial genomes. PLoS One (2010) 1.02
Degradation of n-alkanes and polycyclic aromatic hydrocarbons in petroleum by a newly isolated Pseudomonas aeruginosa DQ8. Bioresour Technol (2010) 1.01
Prediction of proteinase cleavage sites in polyproteins of coronaviruses and its applications in analyzing SARS-CoV genomes. FEBS Lett (2003) 1.01
SecReT4: a web-based bacterial type IV secretion system resource. Nucleic Acids Res (2012) 1.01
Genome sequence of the thermophilic strain Bacillus coagulans 2-6, an efficient producer of high-optical-purity L-lactic acid. J Bacteriol (2011) 1.00
Genome sequence of the thermophilic strain Bacillus coagulans XZL4, an efficient pentose-utilizing producer of chemicals. J Bacteriol (2011) 0.99
Genome sequence of Pseudomonas aeruginosa strain SJTD-1, a bacterium capable of degrading long-chain alkanes and crude oil. J Bacteriol (2012) 0.99
Genome Sequence of Clostridium butyricum Strain DSM 10702, a Promising Producer of Biofuels and Biochemicals. Genome Announc (2013) 0.98
ZCURVE_CoV: a new system to recognize protein coding genes in coronavirus genomes, and its applications in analyzing SARS-CoV genomes. Biochem Biophys Res Commun (2003) 0.98
Genome sequence of Sphingobium yanoikuyae XLDN2-5, an efficient carbazole-degrading strain. J Bacteriol (2011) 0.98
Relative catalytic efficiency of ldhL- and ldhD-encoded products is crucial for optical purity of lactic acid produced by lactobacillus strains. Appl Environ Microbiol (2012) 0.97
The genes coding for the conversion of carbazole to catechol are flanked by IS6100 elements in Sphingomonas sp. strain XLDN2-5. PLoS One (2010) 0.96
Production of L-lactic acid by a thermophilic Bacillus mutant using sodium hydroxide as neutralizing agent. Bioresour Technol (2010) 0.96
Finite element formulation for a digital image correlation method. Appl Opt (2005) 0.96
Genomic analysis and temperature-dependent transcriptome profiles of the rhizosphere originating strain Pseudomonas aeruginosa M18. BMC Genomics (2011) 0.96
ThioFinder: a web-based tool for the identification of thiopeptide gene clusters in DNA sequences. PLoS One (2012) 0.94
Genome sequence of Bacillus pumilus S-1, an efficient isoeugenol-utilizing producer for natural vanillin. J Bacteriol (2011) 0.94
Expansion of the known Klebsiella pneumoniae species gene pool by characterization of novel alien DNA islands integrated into tmRNA gene sites. J Microbiol Methods (2010) 0.94
Structural evidence for direct hydride transfer from NADH to cytochrome P450nor. J Mol Biol (2004) 0.94
Production of N-acetyl-D-neuraminic acid by use of an efficient spore surface display system. Appl Environ Microbiol (2011) 0.93
Genome sequence of Sphingomonas elodea ATCC 31461, a highly productive industrial strain of gellan gum. J Bacteriol (2011) 0.92
Genome sequences of Pseudomonas luteola XLDN4-9 and Pseudomonas stutzeri XLDN-R, two efficient carbazole-degrading strains. J Bacteriol (2012) 0.91
Engineering of cofactor regeneration enhances (2S,3S)-2,3-butanediol production from diacetyl. Sci Rep (2013) 0.91
New metabolites in dibenzofuran cometabolic degradation by a biphenyl-cultivated Pseudomonas putida strain B6-2. Environ Sci Technol (2009) 0.90
Carotenoids play a positive role in the degradation of heterocycles by Sphingobium yanoikuyae. PLoS One (2012) 0.90
Structural basis of substrate binding specificity revealed by the crystal structures of polyamine receptors SpuD and SpuE from Pseudomonas aeruginosa. J Mol Biol (2012) 0.87
Atrazine degradation by a simple consortium of Klebsiella sp. A1 and Comamonas sp. A2 in nitrogen enriched medium. Biodegradation (2009) 0.87
Genome sequence of Xanthomonas campestris JX, an industrially productive strain for Xanthan gum. J Bacteriol (2012) 0.87
An efficient method for N-acetyl-D-neuraminic acid production using coupled bacterial cells with a safe temperature-induced system. Appl Microbiol Biotechnol (2009) 0.87
Genome Sequence of Martelella sp. Strain AD-3, a Moderately Halophilic Polycyclic Aromatic Hydrocarbon-Degrading Bacterium. Genome Announc (2014) 0.87
Stereospecificity of ginsenoside Rg3 in promotion of the immune response to ovalbumin in mice. Int Immunol (2012) 0.86
Genome Sequences of Two Morphologically Distinct and Thermophilic Bacillus coagulans Strains, H-1 and XZL9. Genome Announc (2013) 0.86
Genome sequence of the lactate-utilizing Pseudomonas aeruginosa strain XMG. J Bacteriol (2012) 0.85
Novel organic solvent-responsive expression vectors for biocatalysis: application for development of an organic solvent-tolerant biodesulfurizing strain. Bioresour Technol (2011) 0.85
Microbial desulfurization of gasoline by free whole-cells of Rhodococcus erythropolis XP. FEMS Microbiol Lett (2006) 0.85
Stereospecific antioxidant effects of ginsenoside Rg3 on oxidative stress induced by cyclophosphamide in mice. Fitoterapia (2012) 0.85
A global view of network of lncRNAs and their binding proteins. Mol Biosyst (2014) 0.85
Acceleration of age-related learning and memory decline in middle-aged CD-1 mice due to maternal exposure to lipopolysaccharide during late pregnancy. Behav Brain Res (2010) 0.84
Genome sequence of a nicotine-degrading strain of Arthrobacter. J Bacteriol (2012) 0.84
Genome sequence of the welan gum-producing strain Sphingomonas sp. ATCC 31555. J Bacteriol (2012) 0.84
Genome sequence of Pseudomonas putida strain B6-2, a superdegrader of polycyclic aromatic hydrocarbons and dioxin-like compounds. J Bacteriol (2011) 0.84
Identification of Streptococcus gallolyticus subsp. macedonicus as the etiological agent in a case of culture-negative multivalve infective endocarditis by 16S rDNA PCR analysis of resected valvular tissue. J Heart Valve Dis (2008) 0.84
Characterization and biotechnological potential of petroleum-degrading bacteria isolated from oil-contaminated soils. Bioresour Technol (2010) 0.83
Topologically inferring risk-active pathways toward precise cancer classification by directed random walk. Bioinformatics (2013) 0.83
Thalidomide in the treatment of psoriasis vulgaris: a pilot study. J Dermatol (2011) 0.83
An unusual repressor controls the expression of a crucial nicotine-degrading gene cluster in Pseudomonas putida S16. Mol Microbiol (2014) 0.83
Genome sequence of the thermophile Bacillus coagulans Hammer, the type strain of the species. J Bacteriol (2012) 0.83
Deletion of TnAbaR23 results in both expected and unexpected antibiogram changes in a multidrug-resistant Acinetobacter baumannii strain. Antimicrob Agents Chemother (2012) 0.83
Lymphangiogenesis and its relationship with lymphatic metastasis and prognosis in malignant melanoma. Anat Rec (Hoboken) (2008) 0.83
EGFR-SGLT1 interaction does not respond to EGFR modulators, but inhibition of SGLT1 sensitizes prostate cancer cells to EGFR tyrosine kinase inhibitors. Prostate (2013) 0.83
Genome sequence of Pseudomonas putida Idaho, a unique organic-solvent-tolerant bacterium. J Bacteriol (2011) 0.82
A network medicine approach to build a comprehensive atlas for the prognosis of human cancer. Brief Bioinform (2016) 0.82