Published in Appl Environ Microbiol on January 17, 2014
Gut biogeography of the bacterial microbiota. Nat Rev Microbiol (2015) 1.66
Characterising the bacterial microbiota across the gastrointestinal tracts of dairy cattle: membership and potential function. Sci Rep (2015) 1.01
High-throughput Methods Redefine the Rumen Microbiome and Its Relationship with Nutrition and Metabolism. Bioinform Biol Insights (2014) 0.99
Pyrosequencing reveals diverse fecal microbiota in Simmental calves during early development. Front Microbiol (2014) 0.87
Bacteria and methanogens differ along the gastrointestinal tract of Chinese roe deer (Capreolus pygargus). PLoS One (2014) 0.87
Manipulating rumen microbiome and fermentation through interventions during early life: a review. Front Microbiol (2015) 0.81
Grain-rich diets altered the colonic fermentation and mucosa-associated bacterial communities and induced mucosal injuries in goats. Sci Rep (2016) 0.80
Presence of Selected Methanogens, Fibrolytic Bacteria, and Proteobacteria in the Gastrointestinal Tract of Neonatal Dairy Calves from Birth to 72 Hours. PLoS One (2015) 0.79
Microbial community profiles of the colon from steers differing in feed efficiency. Springerplus (2015) 0.79
Composition of Ileal Bacterial Community in Grazing Goats Varies across Non-rumination, Transition and Rumination Stages of Life. Front Microbiol (2016) 0.78
Oral Administration of Faecalibacterium prausnitzii Decreased the Incidence of Severe Diarrhea and Related Mortality Rate and Increased Weight Gain in Preweaned Dairy Heifers. PLoS One (2015) 0.77
Vaginal Microbiome Characterization of Nellore Cattle Using Metagenomic Analysis. PLoS One (2015) 0.76
Variability of the Sheep Lung Microbiota. Appl Environ Microbiol (2016) 0.76
The Gut Microbiome and Its Potential Role in the Development and Function of Newborn Calf Gastrointestinal Tract. Front Vet Sci (2015) 0.76
Microbial succession in the gastrointestinal tract of dairy cows from 2 weeks to first lactation. Sci Rep (2017) 0.75
Exploring gastric bacterial community in young pigs. PLoS One (2017) 0.75
Characterization of the microbial communities along the gastrointestinal tract of sheep by 454 pyrosequencing analysis. Asian-Australas J Anim Sci (2016) 0.75
Understanding host-microbial interactions in rumen: searching the best opportunity for microbiota manipulation. J Anim Sci Biotechnol (2017) 0.75
Changes in Metabolically Active Bacterial Community during Rumen Development, and Their Alteration by Rhubarb Root Powder Revealed by 16S rRNA Amplicon Sequencing. Front Microbiol (2017) 0.75
Starter Feeding Supplementation Alters Colonic Mucosal Bacterial Communities and Modulates Mucosal Immune Homeostasis in Newborn Lambs. Front Microbiol (2017) 0.75
Effects of dietary supplementation with two alternatives to antibiotics on intestinal microbiota of preweaned calves challenged with Escherichia coli K99. Sci Rep (2017) 0.75
Use of antimicrobial peptides as a feed additive for juvenile goats. Sci Rep (2017) 0.75
QIIME allows analysis of high-throughput community sequencing data. Nat Methods (2010) 85.34
Search and clustering orders of magnitude faster than BLAST. Bioinformatics (2010) 51.97
Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex. Nat Methods (2008) 32.71
Gut immune maturation depends on colonization with a host-specific microbiota. Cell (2012) 5.91
A pyrosequencing study in twins shows that gastrointestinal microbial profiles vary with inflammatory bowel disease phenotypes. Gastroenterology (2010) 5.29
Toll-like receptor signalling in the intestinal epithelium: how bacterial recognition shapes intestinal function. Nat Rev Immunol (2010) 4.07
Intestinal microflora in early infancy: composition and development. Acta Paediatr Suppl (2003) 3.34
Diversity of bifidobacteria within the infant gut microbiota. PLoS One (2012) 2.71
New insights in gut microbiota establishment in healthy breast fed neonates. PLoS One (2012) 1.81
Exploring the bovine rumen bacterial community from birth to adulthood. ISME J (2013) 1.67
Characterization of the rumen microbiota of pre-ruminant calves using metagenomic tools. Environ Microbiol (2011) 1.56
Microbiota of de-novo pediatric IBD: increased Faecalibacterium prausnitzii and reduced bacterial diversity in Crohn's but not in ulcerative colitis. Am J Gastroenterol (2012) 1.54
Regional mucosa-associated microbiota determine physiological expression of TLR2 and TLR4 in murine colon. PLoS One (2010) 1.45
Environmentally-acquired bacteria influence microbial diversity and natural innate immune responses at gut surfaces. BMC Biol (2009) 1.45
Effects of sampling location and time, and host animal on assessment of bacterial diversity and fermentation parameters in the bovine rumen. J Appl Microbiol (2009) 1.31
The host selects mucosal and luminal associations of coevolved gut microorganisms: a novel concept. FEMS Microbiol Rev (2011) 1.30
Identification and expression of Toll-like receptors 1-10 in selected bovine and ovine tissues. Vet Immunol Immunopathol (2005) 1.07
Characterizing the microbiota across the gastrointestinal tract of a Brazilian Nelore steer. Vet Microbiol (2013) 1.04
Fecal microbial diversity in pre-weaned dairy calves as described by pyrosequencing of metagenomic 16S rDNA. Associations of Faecalibacterium species with health and growth. PLoS One (2013) 1.03
Regional and age dependent changes in gene expression of Toll-like receptors and key antimicrobial defence molecules throughout the gastrointestinal tract of dairy calves. Vet Immunol Immunopathol (2012) 1.00
Restricting microbial exposure in early life negates the immune benefits associated with gut colonization in environments of high microbial diversity. PLoS One (2011) 0.98
Characterization of bovine ruminal epithelial bacterial communities using 16S rRNA sequencing, PCR-DGGE, and qRT-PCR analysis. Vet Microbiol (2011) 0.98
Changes in bacterial diversity associated with epithelial tissue in the beef cow rumen during the transition to a high-grain diet. Appl Environ Microbiol (2011) 0.95
Distinct commensal bacteria associated with ingesta and mucosal epithelium in the gastrointestinal tracts of calves and chickens. FEMS Microbiol Ecol (2011) 0.94
Sharpea azabuensis gen. nov., sp. nov., a Gram-positive, strictly anaerobic bacterium isolated from the faeces of thoroughbred horses. Int J Syst Evol Microbiol (2008) 0.90
Detection of Proteobacteria from the rumen by PCR using methanotroph-specific primers. Lett Appl Microbiol (2002) 0.87
rRNA-based analysis to monitor succession of faecal bacterial communities in Holstein calves. Lett Appl Microbiol (2010) 0.87
Factors influencing bacterial attachment to the ruminal epithelium in vitro. J Gen Appl Microbiol (1998) 0.78
Assessment of the microbial ecology of ruminal methanogens in cattle with different feed efficiencies. Appl Environ Microbiol (2009) 1.53
A road less travelled: large animal models in immunological research. Nat Rev Immunol (2003) 1.42
Receptor usage and fetal expression of ovine endogenous betaretroviruses: implications for coevolution of endogenous and exogenous retroviruses. J Virol (2003) 1.39
Linkage of microbial ecology to phenotype: correlation of rumen microbial ecology to cattle's feed efficiency. FEMS Microbiol Lett (2008) 1.30
Characterization of variation in rumen methanogenic communities under different dietary and host feed efficiency conditions, as determined by PCR-denaturing gradient gel electrophoresis analysis. Appl Environ Microbiol (2010) 1.26
Characterization of microRNA expression in bovine adipose tissues: a potential regulatory mechanism of subcutaneous adipose tissue development. BMC Mol Biol (2010) 1.23
Allied industry approaches to alter intramuscular fat content and composition in beef animals. J Food Sci (2010) 1.22
Impact of feed efficiency and diet on adaptive variations in the bacterial community in the rumen fluid of cattle. Appl Environ Microbiol (2011) 1.16
Antarctic krill 454 pyrosequencing reveals chaperone and stress transcriptome. PLoS One (2011) 1.16
A systematic approach for analysis of peptide array kinome data. Sci Signal (2012) 1.10
Genome to kinome: species-specific peptide arrays for kinome analysis. Sci Signal (2009) 1.10
Transcriptome microRNA profiling of bovine mammary epithelial cells challenged with Escherichia coli or Staphylococcus aureus bacteria reveals pathogen directed microRNA expression profiles. BMC Genomics (2014) 1.09
MicroRNA regulation in mammalian adipogenesis. Exp Biol Med (Maywood) (2011) 1.08
Bovine and human cathelicidin cationic host defense peptides similarly suppress transcriptional responses to bacterial lipopolysaccharide. J Leukoc Biol (2006) 1.07
Correlation of particular bacterial PCR-denaturing gradient gel electrophoresis patterns with bovine ruminal fermentation parameters and feed efficiency traits. Appl Environ Microbiol (2010) 1.06
Mycobacterium avium subsp. paratuberculosis inhibits gamma interferon-induced signaling in bovine monocytes: insights into the cellular mechanisms of Johne's disease. Infect Immun (2012) 1.05
Characterization of bovine miRNAs by sequencing and bioinformatics analysis. BMC Mol Biol (2009) 1.05
A novel cytotoxicity assay to evaluate antigen-specific CTL responses using a colorimetric substrate for Granzyme B. J Immunol Methods (2003) 1.02
Regional and age dependent changes in gene expression of Toll-like receptors and key antimicrobial defence molecules throughout the gastrointestinal tract of dairy calves. Vet Immunol Immunopathol (2012) 1.00
Selection of aptamers against live bacterial cells. Anal Chem (2008) 0.98
Gene expression patterns of bovine perimuscular preadipocytes during adipogenesis. Biochem Biophys Res Commun (2007) 0.98
Characterization of bovine ruminal epithelial bacterial communities using 16S rRNA sequencing, PCR-DGGE, and qRT-PCR analysis. Vet Microbiol (2011) 0.98
Adipogenesis of bovine perimuscular preadipocytes. Biochem Biophys Res Commun (2007) 0.98
Variation of bacterial communities and expression of Toll-like receptor genes in the rumen of steers differing in susceptibility to subacute ruminal acidosis. Vet Microbiol (2012) 0.95
Changes in bacterial diversity associated with epithelial tissue in the beef cow rumen during the transition to a high-grain diet. Appl Environ Microbiol (2011) 0.95
Distinct commensal bacteria associated with ingesta and mucosal epithelium in the gastrointestinal tracts of calves and chickens. FEMS Microbiol Ecol (2011) 0.94
Potential regulatory role of microRNAs in the development of bovine gastrointestinal tract during early life. PLoS One (2014) 0.94
Nucleic acids exert a sequence-independent cooperative effect on sequence-dependent activation of Toll-like receptor 9. J Biol Chem (2007) 0.92
Detection, characterization, and in vitro and in vivo expression of genes encoding S-proteins in Lactobacillus gallinarum strains isolated from chicken crops. Appl Environ Microbiol (2005) 0.90
Use of animal models in the development of human vaccines. Future Microbiol (2007) 0.89
Mucosal changes in a long-term bovine intestinal segment model following removal of ingesta and microflora. Gut Microbes (2011) 0.89
A single HBsAg DNA vaccination in combination with electroporation elicits long-term antibody responses in sheep. Bioelectrochemistry (2006) 0.89
Stability, toxicity, and biological activity of host defense peptide BMAP28 and its inversed and retro-inversed isomers. Biopolymers (2011) 0.88
Altered microRNA expression in bovine subcutaneous and visceral adipose tissues from cattle under different diet. PLoS One (2012) 0.88
Induction of ligand-specific PrP (C) signaling in human neuronal cells. Prion (2012) 0.87
Comparative analysis on gene expression profiles in cattle subcutaneous fat tissues. Comp Biochem Physiol Part D Genomics Proteomics (2008) 0.87
Expansion of ruminant-specific microRNAs shapes target gene expression divergence between ruminant and non-ruminant species. BMC Genomics (2013) 0.87
Influence of sire breed on the interplay among rumen microbial populations inhabiting the rumen liquid of the progeny in beef cattle. PLoS One (2013) 0.87
Specific over-expression of deltex and a new Kelch-like protein in human germinal center B cells. Mol Immunol (2003) 0.87
Bovine polymorphonuclear cells passively acquire membrane lipids and integral membrane proteins from apoptotic and necrotic cells. J Leukoc Biol (2006) 0.87
Mucosal dendritic cell diversity in the gastrointestinal tract. Cell Tissue Res (2010) 0.87
Metabolomics of four biofluids from dairy cows: potential biomarkers for milk production and quality. J Proteome Res (2015) 0.86
Modulation of immune responses to bovine herpesvirus-1 in cattle by immunization with a DNA vaccine encoding glycoprotein D as a fusion protein with bovine CD154. Immunology (2004) 0.86
Host responses to persistent Mycobacterium avium subspecies paratuberculosis infection in surgically isolated bovine ileal segments. Clin Vaccine Immunol (2012) 0.86
Oral DNA vaccination in utero induces mucosal immunity and immune memory in the neonate. J Immunol (2002) 0.85
Targeting with bovine CD154 enhances humoral immune responses induced by a DNA vaccine in sheep. J Immunol (2003) 0.85
Gene expression in the medulla following oral infection of cattle with bovine spongiform encephalopathy. J Toxicol Environ Health A (2011) 0.84
Kinome analysis of Toll-like receptor signaling in bovine monocytes. J Recept Signal Transduct Res (2009) 0.84
Comparative analysis of gene expression profiles in ruminal tissue from Holstein dairy cows fed high or low concentrate diets. Comp Biochem Physiol Part D Genomics Proteomics (2010) 0.83
Commensal microbiome effects on mucosal immune system development in the ruminant gastrointestinal tract. Anim Health Res Rev (2012) 0.82
TLR9 signaling failure renders Peyer's patch regulatory B cells unresponsive to stimulation with CpG oligodeoxynucleotides. J Innate Immun (2010) 0.82
Microarray analysis of differentially expressed genes from Peyer's patches of cattle orally challenged with bovine spongiform encephalopathy. J Toxicol Environ Health A (2009) 0.82
Stimulation of innate immune responses by CpG oligodeoxynucleotide in newborn lambs can reduce bovine herpesvirus-1 shedding. Oligonucleotides (2006) 0.81
Increasing gene discovery and coverage using RNA-seq of globin RNA reduced porcine blood samples. BMC Genomics (2014) 0.81
Stress significantly increases mortality following a secondary bacterial respiratory infection. Vet Res (2012) 0.81
Molecular analyses of disease pathogenesis: application of bovine microarrays. Vet Immunol Immunopathol (2005) 0.81
Gene expression alterations in Rocky Mountain elk infected with chronic wasting disease. Prion (2012) 0.81
CpG oligodeoxynucleotide induction of antiviral effector molecules in sheep. Cell Immunol (2004) 0.80
Mucosal dendritic cell subpopulations in the small intestine of newborn calves. Dev Comp Immunol (2011) 0.79
Methanogen prevalence throughout the gastrointestinal tract of pre-weaned dairy calves. Gut Microbes (2014) 0.78
Age-related changes in the distribution and frequency of myeloid and T cell populations in the small intestine of calves. Cell Immunol (2011) 0.78
Small bowel fibrosis and systemic inflammatory response after ileocolonic anastomosis in IL-10 null mice. J Surg Res (2012) 0.78
DNA vaccination in utero: a new approach to induce protective immunity in the newborn. Vaccine (2004) 0.78
Safety, specificity and immunogenicity of a PrP(Sc)-specific prion vaccine based on the YYR disease specific epitope. Prion (2014) 0.77
Mucosal vaccination of the newborn: an unrealized opportunity. Expert Rev Vaccines (2009) 0.77
Transcriptome analysis of the medulla tissue from cattle in response to bovine spongiform encephalopathy using digital gene expression tag profiling. J Toxicol Environ Health A (2011) 0.77
Functional genomics approach for identification of molecular processes underlying neurodegenerative disorders in prion diseases. Curr Genomics (2012) 0.77
A sheep in wolf's clothes: can neutrophils direct the immune response? Vet J (2008) 0.77
Interferon-gamma and B-cell Activating Factor (BAFF) promote bovine B cell activation independent of TLR9 and T-cell signaling. Vet Immunol Immunopathol (2012) 0.77
B-cell activating factor (BAFF) promotes CpG ODN-induced B cell activation and proliferation. Cell Immunol (2011) 0.77
Nutrition affects Sertoli cell function but not Sertoli cell numbers in sexually mature male sheep. Reprod Fertil Dev (2014) 0.77
Pivotal Advance: passively acquired membrane proteins alter the functional capacity of bovine polymorphonuclear cells. J Leukoc Biol (2006) 0.76
Retro-inversion enhances the adjuvant and CpG co-adjuvant activity of host defence peptide Bac2A. Vaccine (2010) 0.76
Amended recombinant cells (ARCs): an economical and surprisingly effective production and delivery vehicle for recombinant bovine IFN-gamma. J Control Release (2005) 0.76
Modern approaches to understanding stress and disease susceptibility: A review with special emphasis on respiratory disease. Int J Gen Med (2009) 0.75
Systemic innate immune responses following intrapulmonary delivery of CpG oligodeoxynucleotides in sheep. Vet Immunol Immunopathol (2006) 0.75
Mucosal immune response in newborn Holstein calves that had maternally derived antibodies and were vaccinated with an intranasal multivalent modified-live virus vaccine. J Am Vet Med Assoc (2012) 0.75
Crystallization and preliminary X-ray diffraction studies of DNA decamer d(CCAGGCCTGG) complexed with cobalt(III)-pepleomycin. Acta Crystallogr D Biol Crystallogr (2003) 0.75
Oral DNA immunization in the second trimester fetal lamb and secondary immune responses in the neonate. Vaccine (2007) 0.75
Amended recombinant cells (ARCs) expressing bovine IFN-gamma: an economical and highly effective adjuvant system. Vaccine (2009) 0.75