Published in BMC Genomics on September 10, 2013
Potential regulatory role of microRNAs in the development of bovine gastrointestinal tract during early life. PLoS One (2014) 0.94
Characterisation and comparison of lactating mouse and bovine mammary gland miRNomes. PLoS One (2014) 0.84
MicroRNA buffering and altered variance of gene expression in response to Salmonella infection. PLoS One (2014) 0.82
Deep sequencing shows microRNA involvement in bovine mammary gland adaptation to diets supplemented with linseed oil or safflower oil. BMC Genomics (2015) 0.81
Roles of small RNAs in the effects of nutrition on apoptosis and spermatogenesis in the adult testis. Sci Rep (2015) 0.79
Genome-wide whole blood microRNAome and transcriptome analyses reveal miRNA-mRNA regulated host response to foodborne pathogen Salmonella infection in swine. Sci Rep (2015) 0.78
Annotation of the goat genome using next generation sequencing of microRNA expressed by the lactating mammary gland: comparison of three approaches. BMC Genomics (2015) 0.76
Blood miRNomes and transcriptomes reveal novel longevity mechanisms in the long-lived bat, Myotis myotis. BMC Genomics (2016) 0.75
A high-quality annotated transcriptome of swine peripheral blood. BMC Genomics (2017) 0.75
miR-148a and miR-17-5p synergistically regulate milk TAG synthesis via PPARGC1A and PPARA in goat mammary epithelial cells. RNA Biol (2017) 0.75
MicroRNA profiling of antler stem cells in potentiated and dormant states and their potential roles in antler regeneration. Mol Genet Genomics (2016) 0.75
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Discovering microRNAs from deep sequencing data using miRDeep. Nat Biotechnol (2008) 10.17
Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals. Nature (2008) 6.81
Diversity of microRNAs in human and chimpanzee brain. Nat Genet (2006) 6.57
miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades. Nucleic Acids Res (2011) 5.83
Biological principles of microRNA-mediated regulation: shared themes amid diversity. Nat Rev Genet (2008) 5.83
MicroRNAs in body fluids--the mix of hormones and biomarkers. Nat Rev Clin Oncol (2011) 5.46
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The birth and death of microRNA genes in Drosophila. Nat Genet (2008) 3.22
Evolution and functional diversification of MIRNA genes. Plant Cell (2011) 3.07
Evolution of microRNA diversity and regulation in animals. Nat Rev Genet (2011) 2.92
Memory efficient folding algorithms for circular RNA secondary structures. Bioinformatics (2006) 2.77
Primate-specific microRNA-637 inhibits tumorigenesis in hepatocellular carcinoma by disrupting signal transducer and activator of transcription 3 signaling. Hepatology (2011) 1.93
Repertoire and evolution of miRNA genes in four divergent nematode species. Genome Res (2009) 1.64
Molecular evolution of a primate-specific microRNA family. Mol Biol Evol (2008) 1.63
MicroRNA-driven developmental remodeling in the brain distinguishes humans from other primates. PLoS Biol (2011) 1.57
MicroRNA expression and regulation in human, chimpanzee, and macaque brains. PLoS Genet (2011) 1.40
Increased sensitivity of next generation sequencing-based expression profiling after globin reduction in human blood RNA. BMC Genomics (2012) 1.18
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Evolution of the human-specific microRNA miR-941. Nat Commun (2012) 1.06
Dissecting sources of quantitative gene expression pattern divergence between Drosophila species. Mol Syst Biol (2012) 0.99
Genome-wide impact of a recently expanded microRNA cluster in mouse. Proc Natl Acad Sci U S A (2011) 0.92
Genome-wide analysis of cis-regulatory divergence between species in the Arabidopsis genus. Mol Biol Evol (2012) 0.91
Effects of cis and trans regulatory variations on the expression divergence of heat shock response genes between yeast strains. Gene (2012) 0.81
DrugBank: a comprehensive resource for in silico drug discovery and exploration. Nucleic Acids Res (2006) 15.19
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The neuronal sortilin-related receptor SORL1 is genetically associated with Alzheimer disease. Nat Genet (2007) 9.80
The genome sequence of taurine cattle: a window to ruminant biology and evolution. Science (2009) 8.23
The CyberCell Database (CCDB): a comprehensive, self-updating, relational database to coordinate and facilitate in silico modeling of Escherichia coli. Nucleic Acids Res (2004) 4.29
Genomic analyses identify distinct patterns of selection in domesticated pigs and Tibetan wild boars. Nat Genet (2013) 3.41
The CGView Server: a comparative genomics tool for circular genomes. Nucleic Acids Res (2008) 3.33
Whole genome linkage disequilibrium maps in cattle. BMC Genet (2007) 3.28
Human adipose tissue-derived stem cells differentiate into endothelial cells in vitro and improve postnatal neovascularization in vivo. Biochem Biophys Res Commun (2005) 2.83
Methods for interpreting lists of affected genes obtained in a DNA microarray experiment. BMC Proc (2009) 2.80
PolySearch: a web-based text mining system for extracting relationships between human diseases, genes, mutations, drugs and metabolites. Nucleic Acids Res (2008) 2.63
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Irisin stimulates browning of white adipocytes through mitogen-activated protein kinase p38 MAP kinase and ERK MAP kinase signaling. Diabetes (2013) 2.02
Analysis of the glucocerebrosidase gene in Parkinson's disease. Mov Disord (2005) 1.99
Comparing thousands of circular genomes using the CGView Comparison Tool. BMC Genomics (2012) 1.95
Mammalian target of rapamycin regulates murine and human cell differentiation through STAT3/p63/Jagged/Notch cascade. J Clin Invest (2009) 1.80
Genome-wide association study of white blood cell count in 16,388 African Americans: the continental origins and genetic epidemiology network (COGENT). PLoS Genet (2011) 1.75
In-depth annotation of SNPs arising from resequencing projects using NGS-SNP. Bioinformatics (2011) 1.64
Assessment of the microbial ecology of ruminal methanogens in cattle with different feed efficiencies. Appl Environ Microbiol (2009) 1.53
PlasMapper: a web server for drawing and auto-annotating plasmid maps. Nucleic Acids Res (2004) 1.49
Interactive microbial genome visualization with GView. Bioinformatics (2010) 1.45
Enhanced perceptual distance functions and indexing for image replica recognition. IEEE Trans Pattern Anal Mach Intell (2005) 1.44
Whole genome resequencing of black Angus and Holstein cattle for SNP and CNV discovery. BMC Genomics (2011) 1.40
Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project. Genome Biol (2015) 1.40
Globaltest and GOEAST: two different approaches for Gene Ontology analysis. BMC Proc (2009) 1.39
MicroRNA-146a modulates TGF-beta1-induced hepatic stellate cell proliferation by targeting SMAD4. Cell Signal (2012) 1.37
High resolution radiation hybrid maps of bovine chromosomes 19 and 29: comparison with the bovine genome sequence assembly. BMC Genomics (2007) 1.37
Does Helicobacter pylori infection play a role in iron deficiency anemia? A meta-analysis. World J Gastroenterol (2010) 1.34
Defect-rich MoS2 ultrathin nanosheets with additional active edge sites for enhanced electrocatalytic hydrogen evolution. Adv Mater (2013) 1.30
Linkage of microbial ecology to phenotype: correlation of rumen microbial ecology to cattle's feed efficiency. FEMS Microbiol Lett (2008) 1.30
yellow and ebony are the responsible genes for the larval color mutants of the silkworm Bombyx mori. Genetics (2008) 1.28
An atlas of DNA methylomes in porcine adipose and muscle tissues. Nat Commun (2012) 1.28
Characterization of variation in rumen methanogenic communities under different dietary and host feed efficiency conditions, as determined by PCR-denaturing gradient gel electrophoresis analysis. Appl Environ Microbiol (2010) 1.26
Characterization of microRNA expression in bovine adipose tissues: a potential regulatory mechanism of subcutaneous adipose tissue development. BMC Mol Biol (2010) 1.23
The potential of microRNAs in liver fibrosis. Cell Signal (2012) 1.22
Allied industry approaches to alter intramuscular fat content and composition in beef animals. J Food Sci (2010) 1.22
MiR-410 regulates MET to influence the proliferation and invasion of glioma. Int J Biochem Cell Biol (2012) 1.22
Discrepancy between radiographic shoulder balance and cosmetic shoulder balance in adolescent idiopathic scoliosis patients with double thoracic curve. Eur Spine J (2008) 1.16
Impact of feed efficiency and diet on adaptive variations in the bacterial community in the rumen fluid of cattle. Appl Environ Microbiol (2011) 1.16
Antarctic krill 454 pyrosequencing reveals chaperone and stress transcriptome. PLoS One (2011) 1.16
Decreased circulating leptin level and its association with body and bone mass in girls with adolescent idiopathic scoliosis. Spine (Phila Pa 1976) (2007) 1.15
Decreased energy metabolism extends life span in Caenorhabditis elegans without reducing oxidative damage. Genetics (2010) 1.13
Genome-wide association study for serum urate concentrations and gout among African Americans identifies genomic risk loci and a novel URAT1 loss-of-function allele. Hum Mol Genet (2011) 1.13
Pedicle subtraction osteotomy through pseudarthrosis to correct thoracolumbar kyphotic deformity in advanced ankylosing spondylitis. Eur Spine J (2011) 1.11
Iron deficiency anaemia can be improved after eradication of Helicobacter pylori. Postgrad Med J (2010) 1.11
Protein kinase Czeta mediates insulin-induced glucose transport through actin remodeling in L6 muscle cells. Mol Biol Cell (2006) 1.10
Metallic few-layered VS2 ultrathin nanosheets: high two-dimensional conductivity for in-plane supercapacitors. J Am Chem Soc (2011) 1.10
Transcriptome microRNA profiling of bovine mammary epithelial cells challenged with Escherichia coli or Staphylococcus aureus bacteria reveals pathogen directed microRNA expression profiles. BMC Genomics (2014) 1.09
The genome of Polaromonas sp. strain JS666: insights into the evolution of a hydrocarbon- and xenobiotic-degrading bacterium, and features of relevance to biotechnology. Appl Environ Microbiol (2008) 1.09
A first generation whole genome RH map of the river buffalo with comparison to domestic cattle. BMC Genomics (2008) 1.08
MicroRNA regulation in mammalian adipogenesis. Exp Biol Med (Maywood) (2011) 1.08
Data mining, neural nets, trees--problems 2 and 3 of Genetic Analysis Workshop 15. Genet Epidemiol (2007) 1.08
Development of a high throughput transformation system for insertional mutagenesis in Magnaporthe oryzae. Fungal Genet Biol (2007) 1.08
A facile aqueous route to synthesize highly ordered mesoporous polymers and carbon frameworks with Ia3d bicontinuous cubic structure. J Am Chem Soc (2005) 1.07
Giant moisture responsiveness of VS2 ultrathin nanosheets for novel touchless positioning interface. Adv Mater (2012) 1.06
Correlation of particular bacterial PCR-denaturing gradient gel electrophoresis patterns with bovine ruminal fermentation parameters and feed efficiency traits. Appl Environ Microbiol (2010) 1.06
Taxonomic identification of commensal bacteria associated with the mucosa and digesta throughout the gastrointestinal tracts of preweaned calves. Appl Environ Microbiol (2014) 1.06
Characterization of bovine miRNAs by sequencing and bioinformatics analysis. BMC Mol Biol (2009) 1.05
In silico identification of genes in bacteriophage DNA. Methods Mol Biol (2009) 1.04
The silkworm Green b locus encodes a quercetin 5-O-glucosyltransferase that produces green cocoons with UV-shielding properties. Proc Natl Acad Sci U S A (2010) 1.04
Osteopontin stimulates autophagy via integrin/CD44 and p38 MAPK signaling pathways in vascular smooth muscle cells. J Cell Physiol (2012) 1.02
Metabolic flexibility revealed in the genome of the cyst-forming alpha-1 proteobacterium Rhodospirillum centenum. BMC Genomics (2010) 1.02
Mining for single nucleotide polymorphisms in pig genome sequence data. BMC Genomics (2009) 1.02
Whole-genome resequencing of Hanwoo (Korean cattle) and insight into regions of homozygosity. BMC Genomics (2013) 1.02
Comparative analysis of two phenotypically-similar but genomically-distinct Burkholderia cenocepacia-specific bacteriophages. BMC Genomics (2012) 1.01
Genome sequence and assembly of Bos indicus. J Hered (2012) 1.00
Abnormal leptin bioavailability in adolescent idiopathic scoliosis: an important new finding. Spine (Phila Pa 1976) (2012) 1.00
Proteomic analysis of human ovaries from normal and polycystic ovarian syndrome. Mol Hum Reprod (2007) 1.00
The influence of closing-opening wedge osteotomy on sagittal balance in thoracolumbar kyphosis secondary to ankylosing spondylitis: a comparison with closing wedge osteotomy. Spine (Phila Pa 1976) (2012) 1.00
Regional and age dependent changes in gene expression of Toll-like receptors and key antimicrobial defence molecules throughout the gastrointestinal tract of dairy calves. Vet Immunol Immunopathol (2012) 1.00
Genomic analysis and relatedness of P2-like phages of the Burkholderia cepacia complex. BMC Genomics (2010) 0.99
Beta-fructofuranosidase genes of the silkworm, Bombyx mori: insights into enzymatic adaptation of B. mori to toxic alkaloids in mulberry latex. J Biol Chem (2008) 0.99
Printed three-dimensional anatomic templates for virtual preoperative planning before reconstruction of old pelvic injuries: initial results. Chin Med J (Engl) (2015) 0.98
Selection of aptamers against live bacterial cells. Anal Chem (2008) 0.98
Adipogenesis of bovine perimuscular preadipocytes. Biochem Biophys Res Commun (2007) 0.98
Gene expression patterns of bovine perimuscular preadipocytes during adipogenesis. Biochem Biophys Res Commun (2007) 0.98
Characterization of bovine ruminal epithelial bacterial communities using 16S rRNA sequencing, PCR-DGGE, and qRT-PCR analysis. Vet Microbiol (2011) 0.98
Transcript-based cloning of RRP46, a regulator of rRNA processing and R gene-independent cell death in barley-powdery mildew interactions. Plant Cell (2009) 0.97
Expression of spider flagelliform silk protein in Bombyx mori cell line by a novel Bac-to-Bac/BmNPV baculovirus expression system. Appl Microbiol Biotechnol (2005) 0.97
PROSESS: a protein structure evaluation suite and server. Nucleic Acids Res (2010) 0.97
Genome-wide association analysis of red blood cell traits in African Americans: the COGENT Network. Hum Mol Genet (2013) 0.97
Timing of menarche in Chinese girls with and without adolescent idiopathic scoliosis: current results and review of the literature. Eur Spine J (2010) 0.97
Investigation of obesity candidate genes on porcine fat deposition quantitative trait loci regions. Obes Res (2004) 0.96
Curcumin suppresses malignant glioma cells growth and induces apoptosis by inhibition of SHH/GLI1 signaling pathway in vitro and vivo. CNS Neurosci Ther (2013) 0.95
Variation of bacterial communities and expression of Toll-like receptor genes in the rumen of steers differing in susceptibility to subacute ruminal acidosis. Vet Microbiol (2012) 0.95
Changes in bacterial diversity associated with epithelial tissue in the beef cow rumen during the transition to a high-grain diet. Appl Environ Microbiol (2011) 0.95
Potential genetic markers predicting the outcome of brace treatment in patients with adolescent idiopathic scoliosis. Eur Spine J (2011) 0.94
Distinct commensal bacteria associated with ingesta and mucosal epithelium in the gastrointestinal tracts of calves and chickens. FEMS Microbiol Ecol (2011) 0.94
A novel GPR143 duplication mutation in a Chinese family with X-linked congenital nystagmus. Mol Vis (2009) 0.94
Thiamine pyrophosphate biosynthesis and transport in the nematode Caenorhabditis elegans. Genetics (2004) 0.94
A sensitive method for detecting variation in copy numbers of duplicated genes. Genome Res (2003) 0.94
Increased expression of insulin-like growth factor-1 receptor is correlated with tumor metastasis and prognosis in patients with osteosarcoma. J Surg Oncol (2011) 0.94
Antimicrobial activities of spice extracts against pathogenic and spoilage bacteria in modified atmosphere packaged fresh pork and vacuum packaged ham slices stored at 4°C. Meat Sci (2008) 0.93