Published in Mol Biol Evol on January 23, 2014
Exploring the limits for reduction of plastid genomes: a case study of the mycoheterotrophic orchids Epipogium aphyllum and Epipogium roseum. Genome Biol Evol (2015) 0.97
The Highly Reduced Plastome of Mycoheterotrophic Sciaphila (Triuridaceae) Is Colinear with Its Green Relatives and Is under Strong Purifying Selection. Genome Biol Evol (2015) 0.96
Perigone Lobe Transcriptome Analysis Provides Insights into Rafflesia cantleyi Flower Development. PLoS One (2016) 0.93
The loss of photosynthetic pathways in the plastid and nuclear genomes of the non-photosynthetic mycoheterotrophic eudicot Monotropa hypopitys. BMC Plant Biol (2016) 0.90
The Plastomes of Two Species in the Endoparasite Genus Pilostyles (Apodanthaceae) Each Retain Just Five or Six Possibly Functional Genes. Genome Biol Evol (2015) 0.90
Miniaturized mitogenome of the parasitic plant Viscum scurruloideum is extremely divergent and dynamic and has lost all nad genes. Proc Natl Acad Sci U S A (2015) 0.89
When the lights go out: the evolutionary fate of free-living colorless green algae. New Phytol (2015) 0.84
Plastome Evolution in Hemiparasitic Mistletoes. Genome Biol Evol (2015) 0.83
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Massive gene loss in mistletoe (Viscum, Viscaceae) mitochondria. Sci Rep (2015) 0.82
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Detecting and Characterizing the Highly Divergent Plastid Genome of the Nonphotosynthetic Parasitic Plant Hydnora visseri (Hydnoraceae). Genome Biol Evol (2016) 0.82
Complete chloroplast genome of Macadamia integrifolia confirms the position of the Gondwanan early-diverging eudicot family Proteaceae. BMC Genomics (2014) 0.80
Assembled Plastid and Mitochondrial Genomes, as well as Nuclear Genes, Place the Parasite Family Cynomoriaceae in the Saxifragales. Genome Biol Evol (2016) 0.78
Mechanistic model of evolutionary rate variation en route to a nonphotosynthetic lifestyle in plants. Proc Natl Acad Sci U S A (2016) 0.78
Evolution of short inverted repeat in cupressophytes, transfer of accD to nucleus in Sciadopitys verticillata and phylogenetic position of Sciadopityaceae. Sci Rep (2016) 0.77
The plastid genome of Polytoma uvella is the largest known among non photosynthetic algae and plants. Plant Physiol (2016) 0.77
Comparative analysis of plastid genomes of non-photosynthetic Ericaceae and their photosynthetic relatives. Sci Rep (2016) 0.76
Auxenochlorella protothecoides and Prototheca wickerhamii plastid genome sequences give insight into the origins of non-photosynthetic algae. Sci Rep (2015) 0.76
Chloroplast Genome Evolution in Actinidiaceae: clpP Loss, Heterogenous Divergence and Phylogenomic Practice. PLoS One (2016) 0.76
Understanding the evolution of holoparasitic plants: the complete plastid genome of the holoparasite Cytinus hypocistis (Cytinaceae). Ann Bot (2016) 0.75
Limited mitogenomic degradation in response to a parasitic lifestyle in Orobanchaceae. Sci Rep (2016) 0.75
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Rafflesia spp.: propagation and conservation. Planta (2016) 0.75
Gene losses and partial deletion of small single-copy regions of the chloroplast genomes of two hemiparasitic Taxillus species. Sci Rep (2017) 0.75
An intact plastid genome is essential for the survival of colorless Euglena longa but not Euglena gracilis. Curr Genet (2016) 0.75
accD nuclear transfer of Platycodon grandiflorum and the plastid of early Campanulaceae. BMC Genomics (2017) 0.75
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Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics (2010) 52.01
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Mitochondrial DNA suggests at least 11 origins of parasitism in angiosperms and reveals genomic chimerism in parasitic plants. BMC Evol Biol (2007) 1.45
Mechanisms of functional and physical genome reduction in photosynthetic and nonphotosynthetic parasitic plants of the broomrape family. Plant Cell (2013) 1.39
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Plastid genome evolution in mycoheterotrophic Ericaceae. Plant Mol Biol (2012) 0.90
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Human epithelial cells trigger dendritic cell mediated allergic inflammation by producing TSLP. Nat Immunol (2002) 10.15
Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified. BMC Evol Biol (2006) 5.74
DNA-Repair Defects and Olaparib in Metastatic Prostate Cancer. N Engl J Med (2015) 5.39
CCL27-CCR10 interactions regulate T cell-mediated skin inflammation. Nat Med (2002) 4.02
A Multiparent Advanced Generation Inter-Cross to fine-map quantitative traits in Arabidopsis thaliana. PLoS Genet (2009) 3.97
Genome-wide patterns of nucleotide polymorphism in domesticated rice. PLoS Genet (2007) 3.83
The cost of inbreeding in Arabidopsis. Nature (2002) 3.80
Epistatic interaction between Arabidopsis FRI and FLC flowering time genes generates a latitudinal cline in a life history trait. Proc Natl Acad Sci U S A (2004) 3.51
A latitudinal cline in flowering time in Arabidopsis thaliana modulated by the flowering time gene FRIGIDA. Proc Natl Acad Sci U S A (2004) 2.99
The BRCA1/BARD1 heterodimer assembles polyubiquitin chains through an unconventional linkage involving lysine residue K6 of ubiquitin. J Biol Chem (2003) 2.89
The evolutionary dynamics of plant duplicate genes. Curr Opin Plant Biol (2005) 2.63
Evolution of crop species: genetics of domestication and diversification. Nat Rev Genet (2013) 2.59
The extent of linkage disequilibrium in rice (Oryza sativa L.). Genetics (2007) 2.56
Molecular evidence for a single evolutionary origin of domesticated rice. Proc Natl Acad Sci U S A (2011) 2.53
Selection under domestication: evidence for a sweep in the rice waxy genomic region. Genetics (2006) 2.42
Global analysis of DNA methylation variation in adipose tissue from twins reveals links to disease-associated variants in distal regulatory elements. Am J Hum Genet (2013) 2.40
The early stages of duplicate gene evolution. Proc Natl Acad Sci U S A (2003) 2.34
Human thymic stromal lymphopoietin promotes dendritic cell-mediated CD4+ T cell homeostatic expansion. Nat Immunol (2004) 2.27
PlaNet: combined sequence and expression comparisons across plant networks derived from seven species. Plant Cell (2011) 2.13
A conserved mutation in an ethylene biosynthesis enzyme leads to andromonoecy in melons. Science (2008) 2.11
Does a tree-like phylogeny only exist at the tips in the prokaryotes? Proc Biol Sci (2004) 2.05
Genotype-environment interactions at quantitative trait loci affecting inflorescence development in Arabidopsis thaliana. Genetics (2003) 1.92
Diabetes promotes an inflammatory macrophage phenotype and atherosclerosis through acyl-CoA synthetase 1. Proc Natl Acad Sci U S A (2012) 1.91
Molecular evidence on the origin and evolution of glutinous rice. Genetics (2002) 1.86
Genomic DNA functions as a universal external standard in quantitative real-time PCR. Nucleic Acids Res (2006) 1.85
Quantitative trait loci for inflorescence development in Arabidopsis thaliana. Genetics (2002) 1.84
Linkage disequilibrium mapping of Arabidopsis CRY2 flowering time alleles. Genetics (2004) 1.81
Fitness effects associated with the major flowering time gene FRIGIDA in Arabidopsis thaliana in the field. Am Nat (2007) 1.76
Epialleles via DNA methylation: consequences for plant evolution. Trends Ecol Evol (2004) 1.74
Convergent evolution and parallelism in plant domestication revealed by an expanding archaeological record. Proc Natl Acad Sci U S A (2014) 1.73
Phylogeography of Asian wild rice, Oryza rufipogon: a genome-wide view. Mol Ecol (2012) 1.70
The Capsella rubella genome and the genomic consequences of rapid mating system evolution. Nat Genet (2013) 1.69
An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions. Nat Genet (2013) 1.68
Bisphenol A levels in blood and urine in a Chinese population and the personal factors affecting the levels. Environ Res (2009) 1.67
Novel loci control variation in reproductive timing in Arabidopsis thaliana in natural environments. Genetics (2002) 1.63
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Candidate gene association mapping of Arabidopsis flowering time. Genetics (2009) 1.58
Contrasting evolutionary forces in the Arabidopsis thaliana floral developmental pathway. Genetics (2002) 1.55
WLS-dependent secretion of WNT3A requires Ser209 acylation and vacuolar acidification. J Cell Sci (2010) 1.54
Establishment and evaluation of a swine model of acute myocardial infarction and reperfusion-ventricular fibrillation-cardiac arrest using the interventional technique. J Chin Med Assoc (2013) 1.47
Serum bisphenol-A concentration and sex hormone levels in men. Fertil Steril (2013) 1.45
Current perspectives and the future of domestication studies. Proc Natl Acad Sci U S A (2014) 1.45
Heterogeneous selection at specific loci in natural environments in Arabidopsis thaliana. Genetics (2003) 1.44
Biomarkers for type 2 diabetes and impaired fasting glucose using a nontargeted metabolomics approach. Diabetes (2013) 1.44
Functional and geographical differentiation of candidate balanced polymorphisms in Arabidopsis thaliana. Mol Ecol (2009) 1.43
Integrated multiomics approach identifies calcium and integrin-binding protein-2 as a novel gene for pulse wave velocity. J Hypertens (2016) 1.41
Kadison-Singer algebras: hyperfinite case. Proc Natl Acad Sci U S A (2010) 1.39
Short-wavelength near infrared stimulation of the inner ear hair cells. Conf Proc IEEE Eng Med Biol Soc (2014) 1.38
Vernalization sensitivity in Arabidopsis thaliana (Brassicaceae): the effects of latitude and FLC variation. Am J Bot (2005) 1.37
Sequence variation of MicroRNAs and their binding sites in Arabidopsis. Plant Physiol (2008) 1.35
The evolution of molecular genetic pathways and networks. Bioessays (2004) 1.33
Identification of reference genes for reverse transcription quantitative real-time PCR normalization in pepper (Capsicum annuum L.). Biochem Biophys Res Commun (2011) 1.31
Urine bisphenol-A (BPA) level in relation to semen quality. Fertil Steril (2010) 1.30
Retracted Darwinian selection on a selfing locus. Science (2004) 1.29
Selection on rapidly evolving proteins in the Arabidopsis genome. Genetics (2003) 1.25
Genetic association study of BDNF in depression: finding from two cohort studies and a meta-analysis. Am J Med Genet B Neuropsychiatr Genet (2008) 1.24
The evolution of plant development. Am J Bot (2004) 1.24
Unique proteomic signatures distinguish macrophages and dendritic cells. PLoS One (2012) 1.24
Microhabitats within venomous cone snails contain diverse actinobacteria. Appl Environ Microbiol (2009) 1.23
Accessing novel conoidean venoms: Biodiverse lumun-lumun marine communities, an untapped biological and toxinological resource. Toxicon (2009) 1.22
p107 and p130 Coordinately regulate proliferation, Cbfa1 expression, and hypertrophic differentiation during endochondral bone development. Dev Biol (2002) 1.22
Molecular phylogeography of domesticated barley traces expansion of agriculture in the Old World. Genetics (2007) 1.20
High-diversity genes in the Arabidopsis genome. Genetics (2005) 1.19
Variation, sex, and social cooperation: molecular population genetics of the social amoeba Dictyostelium discoideum. PLoS Genet (2010) 1.19
A novel DNA nuclease is stimulated by association with the GINS complex. Nucleic Acids Res (2011) 1.19
Independent origins of self-compatibility in Arabidopsis thaliana. Mol Ecol (2007) 1.19
Genomic variation in rice: genesis of highly polymorphic linkage blocks during domestication. PLoS Genet (2006) 1.18
BMP-6 inhibits microRNA-21 expression in breast cancer through repressing deltaEF1 and AP-1. Cell Res (2009) 1.16
Molecular population genetics of the Arabidopsis CLAVATA2 region. The genomic scale of variation and selection in a selfing species. Genetics (2003) 1.12
A rapidly diverging superfamily of peptide toxins in venomous Gemmula species. Toxicon (2007) 1.11
The genetic architecture of shoot branching in Arabidopsis thaliana: a comparative assessment of candidate gene associations vs. quantitative trait locus mapping. Genetics (2007) 1.11
Phylogeny of the genus Turris: correlating molecular data with radular anatomy and shell morphology. Mol Phylogenet Evol (2011) 1.10
A bacterial source for mollusk pyrone polyketides. Chem Biol (2013) 1.09
Direct evidence that genetic variation in glycerol-3-phosphate and malate dehydrogenase genes (Gpdh and Mdh1) affects adult ethanol tolerance in Drosophila melanogaster. Genetics (2008) 1.09
Do reproductive hormones explain the association between body mass index and semen quality? Asian J Androl (2007) 1.09
Insights into the regulation of intrinsically disordered proteins in the human proteome by analyzing sequence and gene expression data. Genome Biol (2009) 1.08
Perivascular stem cells: a prospectively purified mesenchymal stem cell population for bone tissue engineering. Stem Cells Transl Med (2012) 1.08
Isolation, structure determination, and biological activity of a novel alkaloid, perophoramidine, from the Philippine ascidian Perophora namei. J Org Chem (2002) 1.06
A new liquid chromatography-mass spectrometry-based strategy to integrate chemistry, morphology, and evolution of eggplant (Solanum) species. J Chromatogr A (2013) 1.05
Novel quinoline derivatives as inhibitors of bacterial DNA gyrase and topoisomerase IV. Bioorg Med Chem Lett (2013) 1.05
Urine bisphenol-A level in relation to obesity and overweight in school-age children. PLoS One (2013) 1.05
Genome-wide patterns of Arabidopsis gene expression in nature. PLoS Genet (2012) 1.05
Population genomics of the Arabidopsis thaliana flowering time gene network. Mol Biol Evol (2009) 1.05
Pulicatins A-E, neuroactive thiazoline metabolites from cone snail-associated bacteria. J Nat Prod (2010) 1.05
Clone history shapes Populus drought responses. Proc Natl Acad Sci U S A (2011) 1.05
Novel aptamer-nanoparticle bioconjugates enhances delivery of anticancer drug to MUC1-positive cancer cells in vitro. PLoS One (2011) 1.05
Relationship between urine bisphenol-A level and declining male sexual function. J Androl (2010) 1.04
Spheciosterol sulfates, PKCzeta inhibitors from a philippine sponge Spheciospongia sp. J Nat Prod (2008) 1.03
In utero exposure to bisphenol-A and anogenital distance of male offspring. Birth Defects Res A Clin Mol Teratol (2011) 1.03
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Nobilamides A-H, long-acting transient receptor potential vanilloid-1 (TRPV1) antagonists from mollusk-associated bacteria. J Med Chem (2011) 1.02
In utero exposure to bisphenol-A and its effect on birth weight of offspring. Reprod Toxicol (2011) 1.02
Genetic variants in the vitamin d receptor are associated with advanced prostate cancer at diagnosis: findings from the prostate testing for cancer and treatment study and a systematic review. Cancer Epidemiol Biomarkers Prev (2009) 1.02
Two British women studies replicated the association between the Val66Met polymorphism in the brain-derived neurotrophic factor (BDNF) and BMI. Eur J Hum Genet (2009) 1.02
Cell-type-specific regulation of distinct sets of gene targets by Pax3 and Pax3/FKHR. Oncogene (2005) 1.01