Published in Bioinformatics on January 30, 2014
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet (2000) 336.52
Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A (2005) 167.46
KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res (2000) 117.00
Comprehensive molecular portraits of human breast tumours. Nature (2012) 47.39
A global test for groups of genes: testing association with a clinical outcome. Bioinformatics (2004) 10.82
Analyzing gene expression data in terms of gene sets: methodological issues. Bioinformatics (2007) 9.87
Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM. Bioinformatics (2010) 8.44
Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis. BMC Bioinformatics (2010) 7.78
ATP-dependent chromatin remodeling: genetics, genomics and mechanisms. Cell Res (2011) 4.91
Generalized T2 test for genome association studies. Am J Hum Genet (2002) 4.55
A general modular framework for gene set enrichment analysis. BMC Bioinformatics (2009) 3.92
Proteomic and bioinformatic analysis of mammalian SWI/SNF complexes identifies extensive roles in human malignancy. Nat Genet (2013) 3.51
Making sense of cancer genomic data. Genes Dev (2011) 3.01
Outlier sums for differential gene expression analysis. Biostatistics (2006) 2.75
Camera: a competitive gene set test accounting for inter-gene correlation. Nucleic Acids Res (2012) 2.57
Cancer heterogeneity: implications for targeted therapeutics. Br J Cancer (2013) 2.56
COPA--cancer outlier profile analysis. Bioinformatics (2006) 2.26
Integrative analysis of RUNX1 downstream pathways and target genes. BMC Genomics (2008) 2.14
Stabilization of stalled DNA replication forks by the BRCA2 breast cancer susceptibility protein. Genes Dev (2003) 2.03
Insight into the heterogeneity of breast cancer through next-generation sequencing. J Clin Invest (2011) 1.99
Cancer outlier differential gene expression detection. Biostatistics (2006) 1.87
Pathway analysis of genomic data: concepts, methods, and prospects for future development. Trends Genet (2012) 1.86
Gene set enrichment analysis: performance evaluation and usage guidelines. Brief Bioinform (2011) 1.84
Cell cycle control in breast cancer cells. J Cell Biochem (2006) 1.68
DNA methylation alterations exhibit intraindividual stability and interindividual heterogeneity in prostate cancer metastases. Sci Transl Med (2013) 1.63
Heading down the wrong pathway: on the influence of correlation within gene sets. BMC Genomics (2010) 1.59
Gene expression meta-analysis identifies chromosomal regions and candidate genes involved in breast cancer metastasis. Breast Cancer Res Treat (2008) 1.40
Gene set analysis methods: statistical models and methodological differences. Brief Bioinform (2014) 1.30
Integrating genetic and gene expression evidence into genome-wide association analysis of gene sets. Genome Res (2011) 1.20
iBAG: integrative Bayesian analysis of high-dimensional multiplatform genomics data. Bioinformatics (2012) 1.14
Integrating diverse genomic data using gene sets. Genome Biol (2011) 1.13
Gene expression meta-analysis identifies metastatic pathways and transcription factors in breast cancer. BMC Cancer (2008) 1.09
Immunohistochemical detection of Polo-like kinase-1 (PLK1) in primary breast cancer is associated with TP53 mutation and poor clinical outcom. Breast Cancer Res (2012) 1.07
Non-parametric change-point method for differential gene expression detection. PLoS One (2011) 1.02
Integrative pathway analysis of genome-wide association studies and gene expression data in prostate cancer. BMC Syst Biol (2012) 0.95
PLK1 signaling in breast cancer cells cooperates with estrogen receptor-dependent gene transcription. Cell Rep (2013) 0.91
Cancer outlier detection based on likelihood ratio test. Bioinformatics (2008) 0.91
Power calculations in genetic studies. Cold Spring Harb Protoc (2012) 0.82