Published in Plant Cell Rep on February 07, 2014
Water-deficit stress-responsive microRNAs and their targets in four durum wheat genotypes. Funct Integr Genomics (2016) 0.83
An Efficient LCM-Based Method for Tissue Specific Expression Analysis of Genes and miRNAs. Sci Rep (2016) 0.81
Coevolution Pattern and Functional Conservation or Divergence of miR167s and their targets across Diverse Plant Species. Sci Rep (2015) 0.80
Small RNA mediated regulation of seed germination. Front Plant Sci (2015) 0.80
High-throughput sequencing and degradome analysis reveal neutral evolution of Cercis gigantea microRNAs and their targets. Planta (2015) 0.79
Identification of Ice Plant (Mesembryanthemum crystallinum L.) MicroRNAs Using RNA-Seq and Their Putative Roles in High Salinity Responses in Seedlings. Front Plant Sci (2016) 0.76
Identification and Characterization of Salvia miltiorrhizain miRNAs in Response to Replanting Disease. PLoS One (2016) 0.76
Genome-Wide Small RNA Analysis of Soybean Reveals Auxin-Responsive microRNAs that are Differentially Expressed in Response to Salt Stress in Root Apex. Front Plant Sci (2016) 0.75
Root transcriptome of two contrasting indica rice cultivars uncovers regulators of root development and physiological responses. Sci Rep (2016) 0.75
Conservation and diversification of the miR166 family in soybean and potential roles of newly identified miR166s. BMC Plant Biol (2017) 0.75
Sirtinol, a Sir2 protein inhibitor, affects stem cell maintenance and root development in Arabidopsis thaliana by modulating auxin-cytokinin signaling components. Sci Rep (2017) 0.75
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Prediction of plant microRNA targets. Cell (2002) 19.20
The PIN auxin efflux facilitator network controls growth and patterning in Arabidopsis roots. Nature (2005) 8.20
The PLETHORA genes mediate patterning of the Arabidopsis root stem cell niche. Cell (2004) 4.52
Arabidopsis NAC1 transduces auxin signal downstream of TIR1 to promote lateral root development. Genes Dev (2000) 4.46
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PLETHORA proteins as dose-dependent master regulators of Arabidopsis root development. Nature (2007) 3.95
Expression dynamics of WOX genes mark cell fate decisions during early embryonic patterning in Arabidopsis thaliana. Development (2004) 3.93
WUSCHEL controls meristem function by direct regulation of cytokinin-inducible response regulators. Nature (2005) 3.89
Conserved factors regulate signalling in Arabidopsis thaliana shoot and root stem cell organizers. Nature (2007) 3.84
Cytokinins determine Arabidopsis root-meristem size by controlling cell differentiation. Curr Biol (2007) 3.25
Cell signalling by microRNA165/6 directs gene dose-dependent root cell fate. Nature (2010) 3.19
Class III homeodomain-leucine zipper gene family members have overlapping, antagonistic, and distinct roles in Arabidopsis development. Plant Cell (2004) 3.17
Control of root cap formation by MicroRNA-targeted auxin response factors in Arabidopsis. Plant Cell (2005) 2.85
Pattern formation via small RNA mobility. Genes Dev (2009) 2.50
Roles of Arabidopsis ATP/ADP isopentenyltransferases and tRNA isopentenyltransferases in cytokinin biosynthesis. Proc Natl Acad Sci U S A (2006) 2.36
Multiple feedback loops through cytokinin signaling control stem cell number within the Arabidopsis shoot meristem. Proc Natl Acad Sci U S A (2009) 2.36
The rate of cell differentiation controls the Arabidopsis root meristem growth phase. Curr Biol (2010) 2.33
Auxin control of root development. Cold Spring Harb Perspect Biol (2010) 2.30
Regulation of Arabidopsis shoot apical meristem and lateral organ formation by microRNA miR166g and its AtHD-ZIP target genes. Development (2005) 2.24
Polar auxin transport--old questions and new concepts? Plant Mol Biol (2002) 2.04
miR390, Arabidopsis TAS3 tasiRNAs, and their AUXIN RESPONSE FACTOR targets define an autoregulatory network quantitatively regulating lateral root growth. Plant Cell (2010) 1.96
PIN-pointing the molecular basis of auxin transport. Curr Opin Plant Biol (1999) 1.90
A PHABULOSA/cytokinin feedback loop controls root growth in Arabidopsis. Curr Biol (2012) 1.61
MicroRNA166 controls root and nodule development in Medicago truncatula. Plant J (2008) 1.61
Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis. J Exp Bot (2010) 1.43
Plant stem cell niches. Annu Rev Plant Biol (2012) 1.40
Widespread long noncoding RNAs as endogenous target mimics for microRNAs in plants. Plant Physiol (2013) 1.38
Signaling in and out: control of cell division and differentiation in the shoot and root. Plant Cell (2002) 1.36
MIR166/165 genes exhibit dynamic expression patterns in regulating shoot apical meristem and floral development in Arabidopsis. Planta (2006) 1.33
Non-cell-autonomous microRNA165 acts in a dose-dependent manner to regulate multiple differentiation status in the Arabidopsis root. Development (2011) 1.30
The molecular basis of cytokinin function. Curr Opin Plant Biol (2009) 1.22
Small RNAs in development - insights from plants. Curr Opin Genet Dev (2012) 1.21
Hormone interactions at the root apical meristem. Plant Mol Biol (2008) 1.18
Growth and development of the root apical meristem. Curr Opin Plant Biol (2011) 1.14
MicroRNAs as regulators of root development and architecture. Plant Mol Biol (2011) 1.07
MicroRNA-mediated signaling involved in plant root development. Biochem Biophys Res Commun (2010) 1.05
Spatiotemporal changes in the role of cytokinin during root development. New Phytol (2013) 0.83
SWP1 negatively regulates lateral root initiation and elongation in Arabidopsis. Plant Signal Behav (2012) 0.79
Plant biology. Plant acupuncture: sticking PINs in the right places. Science (2004) 0.77
The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science (2007) 8.12
Constitutive photomorphogenesis 1 and multiple photoreceptors control degradation of phytochrome interacting factor 3, a transcription factor required for light signaling in Arabidopsis. Plant Cell (2004) 3.31
Transcriptional control of gene expression by microRNAs. Cell (2010) 3.05
Arabidopsis COP1 shapes the temporal pattern of CO accumulation conferring a photoperiodic flowering response. EMBO J (2008) 2.54
Arabidopsis DOF transcription factors act redundantly to reduce CONSTANS expression and are essential for a photoperiodic flowering response. Dev Cell (2009) 2.24
An ancient genome duplication contributed to the abundance of metabolic genes in the moss Physcomitrella patens. BMC Evol Biol (2007) 2.17
PlanTAPDB, a phylogeny-based resource of plant transcription-associated proteins. Plant Physiol (2007) 1.74
The plant ontology as a tool for comparative plant anatomy and genomic analyses. Plant Cell Physiol (2012) 1.65
Exploring plant biodiversity: the Physcomitrella genome and beyond. Trends Plant Sci (2008) 1.56
Genome-wide phylogenetic comparative analysis of plant transcriptional regulation: a timeline of loss, gain, expansion, and correlation with complexity. Genome Biol Evol (2010) 1.53
Gene clusters involved in anaerobic benzoate degradation of Geobacter metallireducens. Mol Microbiol (2005) 1.50
Physcomitrella patens is highly tolerant against drought, salt and osmotic stress. Planta (2004) 1.41
Dating the early evolution of plants: detection and molecular clock analyses of orthologs. Mol Genet Genomics (2007) 1.39
Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution. BMC Plant Biol (2007) 1.38
Reannotation and extended community resources for the genome of the non-seed plant Physcomitrella patens provide insights into the evolution of plant gene structures and functions. BMC Genomics (2013) 1.38
The evolution of nuclear auxin signalling. BMC Evol Biol (2009) 1.27
Cloning and functional characterisation of an enzyme involved in the elongation of Delta6-polyunsaturated fatty acids from the moss Physcomitrella patens. Plant J (2002) 1.18
An improved and highly standardised transformation procedure allows efficient production of single and multiple targeted gene-knockouts in a moss, Physcomitrella patens. Curr Genet (2003) 1.18
Quantitative promoter analysis in Physcomitrella patens: a set of plant vectors activating gene expression within three orders of magnitude. BMC Biotechnol (2004) 1.16
Dual targeting of plastid division protein FtsZ to chloroplasts and the cytoplasm. EMBO Rep (2004) 1.15
Moss transcriptome and beyond. Trends Plant Sci (2002) 1.14
The mechanism of gene targeting in Physcomitrella patens: homologous recombination, concatenation and multiple integration. Nucleic Acids Res (2006) 1.14
Identification of genic moss SSR markers and a comparative analysis of twenty-four algal and plant gene indices reveal species-specific rather than group-specific characteristics of microsatellites. BMC Plant Biol (2006) 1.14
Regulation of stem cell maintenance by the Polycomb protein FIE has been conserved during land plant evolution. Development (2009) 1.13
Prediction of dual protein targeting to plant organelles. New Phytol (2009) 1.10
Moss (Physcomitrella patens) GH3 proteins act in auxin homeostasis. New Phytol (2009) 1.10
Microarray analysis of the moss Physcomitrella patens reveals evolutionarily conserved transcriptional regulation of salt stress and abscisic acid signalling. Plant Mol Biol (2009) 1.09
Two RpoT genes of Physcomitrella patens encode phage-type RNA polymerases with dual targeting to mitochondria and plastids. Gene (2002) 1.08
Targeted knockouts of Physcomitrella lacking plant-specific immunogenic N-glycans. Plant Biotechnol J (2004) 1.08
A novel calcium binding site in the slow vacuolar cation channel TPC1 senses luminal calcium levels. Plant Cell (2011) 1.06
The moss Physcomitrella patens contains cyclopentenones but no jasmonates: mutations in allene oxide cyclase lead to reduced fertility and altered sporophyte morphology. New Phytol (2010) 1.05
A PIIB-type Ca2+-ATPase is essential for stress adaptation in Physcomitrella patens. Proc Natl Acad Sci U S A (2008) 1.02
Metabolite profiling of the moss Physcomitrella patens reveals evolutionary conservation of osmoprotective substances. Plant Cell Rep (2011) 1.01
Plant functional genomics. Naturwissenschaften (2002) 1.01
Production of biologically active recombinant human factor H in Physcomitrella. Plant Biotechnol J (2010) 1.00
Protein encoding genes in an ancient plant: analysis of codon usage, retained genes and splice sites in a moss, Physcomitrella patens. BMC Genomics (2005) 1.00
Current achievements in the production of complex biopharmaceuticals with moss bioreactors. Bioprocess Biosyst Eng (2007) 1.00
Expansins in the bryophyte Physcomitrella patens. Plant Mol Biol (2002) 0.99
Nonflowering plants possess a unique folate-dependent phenylalanine hydroxylase that is localized in chloroplasts. Plant Cell (2010) 0.99
Evolutionary conservation of plant gibberellin signalling pathway components. BMC Plant Biol (2007) 0.96
The speciation history of the Physcomitrium--Physcomitrella species complex. Evolution (2009) 0.95
Functional knockout of the adenosine 5'-phosphosulfate reductase gene in Physcomitrella patens revives an old route of sulfate assimilation. J Biol Chem (2002) 0.94
Cloning and expression of the tobacco CHLM sequence encoding Mg protoporphyrin IX methyltransferase and its interaction with Mg chelatase. Plant Mol Biol (2005) 0.94
Specific gene silencing by artificial MicroRNAs in Physcomitrella patens: an alternative to targeted gene knockouts. Plant Physiol (2008) 0.94
Moss bioreactors producing improved biopharmaceuticals. Curr Opin Biotechnol (2007) 0.94
A mitochondrial protein homologous to the mammalian peripheral-type benzodiazepine receptor is essential for stress adaptation in plants. Plant J (2007) 0.93
DICER-LIKE3 activity in Physcomitrella patens DICER-LIKE4 mutants causes severe developmental dysfunction and sterility. Mol Plant (2012) 0.93
The putative moss 3'-phosphoadenosine-5'-phosphosulfate reductase is a novel form of adenosine-5'-phosphosulfate reductase without an iron-sulfur cluster. J Biol Chem (2007) 0.92
Simultaneous isolation of pure and intact chloroplasts and mitochondria from moss as the basis for sub-cellular proteomics. Plant Cell Rep (2010) 0.92
High frequency of phenotypic deviations in Physcomitrella patens plants transformed with a gene-disruption library. BMC Plant Biol (2002) 0.91
ppdb: plant promoter database version 3.0. Nucleic Acids Res (2013) 0.91
Expression of abiotic stress inducible ETHE1-like protein from rice is higher in roots and is regulated by calcium. Physiol Plant (2014) 0.90
Biosynthesis of C9-aldehydes in the moss Physcomitrella patens. Biochim Biophys Acta (2006) 0.90
Quantitative analysis of the mitochondrial and plastid proteomes of the moss Physcomitrella patens reveals protein macrocompartmentation and microcompartmentation. Plant Physiol (2014) 0.89
Loss of GH3 function does not affect phytochrome-mediated development in a moss, Physcomitrella patens. J Plant Physiol (2004) 0.89
A sequence-anchored genetic linkage map for the moss, Physcomitrella patens. Plant J (2008) 0.89
Involvement of a class III peroxidase and the mitochondrial protein TSPO in oxidative burst upon treatment of moss plants with a fungal elicitor. Mol Plant Microbe Interact (2012) 0.89
Moss-based production of asialo-erythropoietin devoid of Lewis A and other plant-typical carbohydrate determinants. Plant Biotechnol J (2012) 0.89
An efficient protocol for the identification of protein phosphorylation in a seedless plant, sensitive enough to detect members of signalling cascades. Electrophoresis (2004) 0.89
The relevance of compartmentation for cysteine synthesis in phototrophic organisms. Protoplasma (2012) 0.89
High contents of very long-chain polyunsaturated fatty acids in different moss species. Plant Cell Rep (2013) 0.88
Rapid alteration of the phosphoproteome in the moss Physcomitrella patens after cytokinin treatment. J Proteome Res (2006) 0.87
MicroRNA534a control of BLADE-ON-PETIOLE 1 and 2 mediates juvenile-to-adult gametophyte transition in Physcomitrella patens. Plant J (2011) 0.87
Glycoprotein production in moss bioreactors. Plant Cell Rep (2011) 0.87
System for stable β-estradiol-inducible gene expression in the moss Physcomitrella patens. PLoS One (2013) 0.87
PpASCL, a moss ortholog of anther-specific chalcone synthase-like enzymes, is a hydroxyalkylpyrone synthase involved in an evolutionarily conserved sporopollenin biosynthesis pathway. New Phytol (2011) 0.86
Insights from the cold transcriptome of Physcomitrella patens: global specialization pattern of conserved transcriptional regulators and identification of orphan genes involved in cold acclimation. New Phytol (2014) 0.85
A novel aspartic proteinase is targeted to the secretory pathway and to the vacuole in the moss Physcomitrella patens. Eur J Cell Biol (2004) 0.85
Large-scale gene expression profiling data for the model moss Physcomitrella patens aid understanding of developmental progression, culture and stress conditions. Plant J (2014) 0.85
Diversification of ftsZ during early land plant evolution. J Mol Evol (2004) 0.84
Dead end for auxin conjugates in Physcomitrella? Plant Signal Behav (2009) 0.84
Functional cross-kingdom conservation of mammalian and moss (Physcomitrella patens) transcription, translation and secretion machineries. Plant Biotechnol J (2008) 0.84
Laser assisted microdissection, an efficient technique to understand tissue specific gene expression patterns and functional genomics in plants. Mol Biotechnol (2015) 0.84
Effects of nutrients, cell density and culture techniques on protoplast regeneration and early protonema development in a moss, Physcomitrella patens. J Plant Physiol (2003) 0.83
A gene responsible for prolyl-hydroxylation of moss-produced recombinant human erythropoietin. Sci Rep (2013) 0.82
The moss bioreactor. Curr Opin Plant Biol (2004) 0.82
A large plant beta-tubulin family with minimal C-terminal variation but differences in expression. Gene (2004) 0.82
Use of endogenous signal sequences for transient production and efficient secretion by moss (Physcomitrella patens) cells. BMC Biotechnol (2005) 0.82
DNA METHYLTRANSFERASE 1 is involved in (m)CG and (m)CCG DNA methylation and is essential for sporophyte development in Physcomitrella patens. Plant Mol Biol (2015) 0.81
A red light-controlled synthetic gene expression switch for plant systems. Mol Biosyst (2014) 0.80
Mapping of the Physcomitrella patens proteome. Phytochemistry (2004) 0.80
Identification and characterization of NAGNAG alternative splicing in the moss Physcomitrella patens. BMC Plant Biol (2010) 0.80
Cyclin D-knockout uncouples developmental progression from sugar availability. Plant Mol Biol (2003) 0.80
Enhanced recovery of a secreted recombinant human growth factor using stabilizing additives and by co-expression of human serum albumin in the moss Physcomitrella patens. Plant Biotechnol J (2005) 0.80
Targeted knock-out of a gene encoding sulfite reductase in the moss Physcomitrella patens affects gametophytic and sporophytic development. FEBS Lett (2010) 0.80
An Env-derived multi-epitope HIV chimeric protein produced in the moss Physcomitrella patens is immunogenic in mice. Plant Cell Rep (2014) 0.80
A fast and flexible PEG-mediated transient expression system in plants for high level expression of secreted recombinant proteins. J Biotechnol (2005) 0.79
From axenic spore germination to molecular farming. One century of bryophyte in vitro culture. Plant Cell Rep (2004) 0.79
Filamentous temperature-sensitive Z (FtsZ) isoforms specifically interact in the chloroplasts and in the cytosol of Physcomitrella patens. New Phytol (2007) 0.79
Plant proteomics. Methods Mol Biol (2008) 0.79
SWP1 negatively regulates lateral root initiation and elongation in Arabidopsis. Plant Signal Behav (2012) 0.79
Plant biotechnology in support of the Millennium Goals. Plant Cell Rep (2011) 0.78
Molecular evidence for convergent evolution and allopolyploid speciation within the Physcomitrium-Physcomitrella species complex. BMC Evol Biol (2014) 0.78
Physcomitrella PpORS, basal to plant type III polyketide synthases in phylogenetic trees, is a very long chain 2'-oxoalkylresorcinol synthase. J Biol Chem (2012) 0.78
Gene Targeting for Precision Glyco-Engineering: Production of Biopharmaceuticals Devoid of Plant-Typical Glycosylation in Moss Bioreactors. Methods Mol Biol (2015) 0.78
Biosynthesis of allene oxides in Physcomitrella patens. BMC Plant Biol (2012) 0.77
The role of the novel adenosine 5'-phosphosulfate reductase in regulation of sulfate assimilation of Physcomitrella patens. Plant Mol Biol (2007) 0.77
Design and characterization of a modular membrane protein anchor to functionalize the moss Physcomitrella patens with extracellular catalytic and/or binding activities. ACS Synth Biol (2014) 0.77
The potential of Physcomitrella patens as a platform for the production of plant-based vaccines. Expert Rev Vaccines (2014) 0.76