Application of metagenomics in understanding oral health and disease.

PubWeight™: 0.91‹?›

🔗 View Article (PMC 3979870)

Published in Virulence on March 18, 2014

Authors

Ping Xu1, John Gunsolley2

Author Affiliations

1: VCU Philips Institute; Virginia Commonwealth University; Richmond, VA USA; Center for the Study of Biological Complexity; Virginia Commonwealth University; Richmond, VA USA; Department of Microbiology and Immunology; Virginia Commonwealth University; Richmond, VA USA.
2: Periodontics Department; Virginia Commonwealth University; Richmond, VA USA.

Articles cited by this

Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science (1995) 68.34

Environmental genome shotgun sequencing of the Sargasso Sea. Science (2004) 45.23

Sequencing technologies - the next generation. Nat Rev Genet (2009) 40.57

Structure, function and diversity of the healthy human microbiome. Nature (2012) 30.40

Host-bacterial mutualism in the human intestine. Science (2005) 26.39

Comparative metagenomics of microbial communities. Science (2005) 25.88

Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature (2004) 20.20

Defining the normal bacterial flora of the oral cavity. J Clin Microbiol (2005) 15.75

Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome". Proc Natl Acad Sci U S A (2005) 14.59

A framework for human microbiome research. Nature (2012) 11.41

Periodontal diseases. Lancet (2005) 10.13

The human oral microbiome. J Bacteriol (2010) 9.00

Dental caries. Lancet (2007) 6.31

Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma. Genome Res (2011) 5.58

The Human Oral Microbiome Database: a web accessible resource for investigating oral microbe taxonomic and genomic information. Database (Oxford) (2010) 4.66

The keystone-pathogen hypothesis. Nat Rev Microbiol (2012) 4.18

Microbial ecology of dental plaque and its significance in health and disease. Adv Dent Res (1994) 4.11

Microbiology of the early colonization of human enamel and root surfaces in vivo. Scand J Dent Res (1987) 3.79

Prediction of effective genome size in metagenomic samples. Genome Biol (2007) 3.73

Comparisons of subgingival microbial profiles of refractory periodontitis, severe periodontitis, and periodontal health using the human oral microbe identification microarray. J Periodontol (2009) 3.66

Oral microbial communities in sickness and in health. Trends Microbiol (2005) 3.40

Distinct and complex bacterial profiles in human periodontitis and health revealed by 16S pyrosequencing. ISME J (2011) 3.35

Bacterial coaggregation: an integral process in the development of multi-species biofilms. Trends Microbiol (2003) 3.17

Mobile microbiome: oral bacteria in extra-oral infections and inflammation. J Dent Res (2013) 2.89

The role of bacteria in the caries process: ecological perspectives. J Dent Res (2010) 2.87

Beyond the red complex and into more complexity: the polymicrobial synergy and dysbiosis (PSD) model of periodontal disease etiology. Mol Oral Microbiol (2012) 2.82

Competition and coexistence between Streptococcus mutans and Streptococcus sanguinis in the dental biofilm. J Bacteriol (2005) 2.60

The oral microbiome in health and disease. Pharmacol Res (2012) 2.40

PCR biases distort bacterial and archaeal community structure in pyrosequencing datasets. PLoS One (2012) 2.31

The oral metagenome in health and disease. ISME J (2011) 2.25

Bacterial 16S sequence analysis of severe caries in young permanent teeth. J Clin Microbiol (2010) 2.21

Genome of the opportunistic pathogen Streptococcus sanguinis. J Bacteriol (2007) 2.21

Oral biofilms, periodontitis, and pulmonary infections. Oral Dis (2007) 2.14

Pathogenicity islands and phages in Vibrio cholerae evolution. Trends Microbiol (2003) 2.03

Deep sequencing of the oral microbiome reveals signatures of periodontal disease. PLoS One (2012) 1.96

Mobile genetic elements of Staphylococcus aureus. Cell Mol Life Sci (2010) 1.95

Virulence factors of Actinobacillus actinomycetemcomitans. Periodontol 2000 (1999) 1.94

Computational meta'omics for microbial community studies. Mol Syst Biol (2013) 1.84

Prokaryotic taxonomy and phylogeny in the genomic era: advancements and challenges ahead. Curr Opin Microbiol (2007) 1.83

Subgingival colonization by Porphyromonas gingivalis. Oral Microbiol Immunol (2000) 1.78

What is microbial community ecology? ISME J (2009) 1.76

Natural history of Streptococcus sanguinis in the oral cavity of infants: evidence for a discrete window of infectivity. Infect Immun (2000) 1.75

Integrating next-generation sequencing and traditional tongue diagnosis to determine tongue coating microbiome. Sci Rep (2012) 1.52

Clonal diversity of the taxon Porphyromonas gingivalis assessed by random amplified polymorphic DNA fingerprinting. Infect Immun (1995) 1.48

Microbial geography of the oral cavity. J Dent Res (2013) 1.47

The canine oral microbiome. PLoS One (2012) 1.44

Identification of virulence determinants for endocarditis in Streptococcus sanguinis by signature-tagged mutagenesis. Infect Immun (2005) 1.35

Metagenomic sequencing reveals microbiota and its functional potential associated with periodontal disease. Sci Rep (2013) 1.30

Evolutionary and population genomics of the cavity causing bacteria Streptococcus mutans. Mol Biol Evol (2012) 1.29

Beyond the oral microbiome. Environ Microbiol (2011) 1.28

Clinical and microbiological aspects of chemotherapeutic agents used according to the specific plaque hypothesis. J Dent Res (1979) 1.27

Correlation network analysis applied to complex biofilm communities. PLoS One (2011) 1.21

Bacterial factors in nonspecific gingivitis. J Dent Res (1954) 1.20

Community and gene composition of a human dental plaque microbiota obtained by metagenomic sequencing. Mol Oral Microbiol (2010) 1.17

Contribution of Porphyromonas gingivalis lipopolysaccharide to periodontitis. Periodontol 2000 (2010) 1.17

The non-specific theory in microbial etiology of inflammatory periodontal diseases. J Clin Periodontol (1986) 1.16

Monobacterial and mixed bacterial plaques of Streptococcus mutans and Veillonella alcalescens in an artificial mouth: development, metabolism, and effect on human dental enamel. Caries Res (1988) 1.14

Oral health and adverse pregnancy outcomes - what's next? J Dent Res (2010) 1.12

The role of the microbiome in rheumatic diseases. Curr Rheumatol Rep (2013) 1.11

Oral microbiome of deep and shallow dental pockets in chronic periodontitis. PLoS One (2013) 1.11

The mutacins of Streptococcus mutans: regulation and ecology. Mol Oral Microbiol (2011) 1.10

Dental caries from a molecular microbiological perspective. Caries Res (2012) 1.09

Composition and development of oral bacterial communities. Periodontol 2000 (2014) 1.07

Molecular analysis of human oral microbiota. J Periodontal Res (2005) 1.07

Pyrosequencing analysis of oral microbiota in children with severe early childhood dental caries. Curr Microbiol (2013) 1.06

Deep metaproteomic analysis of human salivary supernatant. Proteomics (2012) 1.04

Identifying low pH active and lactate-utilizing taxa within oral microbiome communities from healthy children using stable isotope probing techniques. PLoS One (2012) 1.04

Investigation of the enteric pathogenic potential of oral Campylobacter concisus strains isolated from patients with inflammatory bowel disease. PLoS One (2012) 1.03

Pilot study on n-3 polyunsaturated fatty acids in the treatment of human experimental gingivitis. J Clin Periodontol (1997) 1.03

Horizontal transfer of the high-pathogenicity island of Yersinia pseudotuberculosis. J Bacteriol (2005) 1.02

The relation between oral Candida load and bacterial microbiome profiles in Dutch older adults. PLoS One (2012) 1.01

Progress dissecting the oral microbiome in caries and health. Adv Dent Res (2012) 1.00

Denaturing gradient gel electrophoresis analysis to study bacterial community structure in pockets of periodontitis patients. Oral Microbiol Immunol (2003) 0.98

Microbial transformation from normal oral microbiota to acute endodontic infections. BMC Genomics (2012) 0.97

Omega-3 fatty acid regulates inflammatory cytokine/mediator messenger RNA expression in Porphyromonas gingivalis-induced experimental periodontal disease. Oral Microbiol Immunol (2007) 0.96

Identification of hydrogen peroxide production-related genes in Streptococcus sanguinis and their functional relationship with pyruvate oxidase. Microbiology (2010) 0.96

Dental caries pathogenicity: a genomic and metagenomic perspective. Int Dent J (2011) 0.93

Inactivation of cyclic Di-GMP binding protein TDE0214 affects the motility, biofilm formation, and virulence of Treponema denticola. J Bacteriol (2013) 0.89

Next-generation sequencing approaches to understanding the oral microbiome. Adv Dent Res (2012) 0.88

Molecular identification and quantification of bacteria from endodontic infections using real-time polymerase chain reaction. Oral Microbiol Immunol (2008) 0.88

Signal peptide of FadA adhesin from Fusobacterium nucleatum plays a novel structural role by modulating the filament's length and width. FEBS Lett (2011) 0.86

The relationship between periodontitis and diabetes: a brief review. SADJ (2013) 0.85

Genotype variation and capsular serotypes of Porphyromonas gingivalis from chronic periodontitis and periodontal abscesses. FEMS Microbiol Lett (2007) 0.84

Restriction fragment length polymorphism analysis of two hemagglutinin loci, serotyping and agglutinating activity of Porphyromonas gingivalis isolates. Oral Microbiol Immunol (1995) 0.83

Diagnosis and anti-infective therapy of periodontitis. Expert Rev Anti Infect Ther (2007) 0.80

Acquisition of complement inhibitor serine protease factor I and its cofactors C4b-binding protein and factor H by Prevotella intermedia. PLoS One (2012) 0.80

Selective removal of human DNA from metagenomic DNA samples extracted from dental plaque. J Basic Microbiol (2011) 0.79

Metagenomics of dental biofilms. Adv Appl Microbiol (2008) 0.76