Published in Plant Physiol on March 27, 2014
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A developing Setaria viridis internode: an experimental system for the study of biomass generation in a C4 model species. Biotechnol Biofuels (2016) 0.81
An Untranslated cis-Element Regulates the Accumulation of Multiple C4 Enzymes in Gynandropsis gynandra Mesophyll Cells. Plant Cell (2016) 0.79
Maize and millet transcription factors annotated using comparative genomic and transcriptomic data. BMC Genomics (2014) 0.78
Setaria viridis as a Model System to Advance Millet Genetics and Genomics. Front Plant Sci (2016) 0.78
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Comparative cell-specific transcriptomics reveals differentiation of C4 photosynthesis pathways in switchgrass and other C4 lineages. J Exp Bot (2016) 0.77
Developmental genetic mechanisms of C4 syndrome based on transcriptome analysis of C3 cotyledons and C4 assimilating shoots in Haloxylon ammodendron. PLoS One (2015) 0.77
A high throughput gas exchange screen for determining rates of photorespiration or regulation of C4 activity. J Exp Bot (2014) 0.76
C4 Photosynthesis in the Rice Paddy: Insights from the Noxious Weed Echinochloa glabrescens. Plant Physiol (2015) 0.76
Cross species selection scans identify components of C4 photosynthesis in the grasses. J Exp Bot (2016) 0.76
The Differences between NAD-ME and NADP-ME Subtypes of C4 Photosynthesis: More than Decarboxylating Enzymes. Front Plant Sci (2016) 0.75
Loss of the Chloroplast Transit Peptide from an Ancestral C3 Carbonic Anhydrase Is Associated with C4 Evolution in the Grass Genus Neurachne. Plant Physiol (2017) 0.75
Independent and Parallel Evolution of New Genes by Gene Duplication in Two Origins of C4 Photosynthesis Provides New Insight into the Mechanism of Phloem Loading in C4 Species. Mol Biol Evol (2016) 0.75
Most photorespiratory genes are preferentially expressed in the bundle sheath cells of the C4 grass Sorghum bicolor. J Exp Bot (2016) 0.75
Metabolic Network Constrains Gene Regulation of C4 Photosynthesis: The Case of Maize. Plant Cell Physiol (2016) 0.75
Differential expression analysis for sequence count data. Genome Biol (2010) 64.56
Search and clustering orders of magnitude faster than BLAST. Bioinformatics (2010) 51.97
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol (2013) 32.42
Predicting subcellular localization of proteins based on their N-terminal amino acid sequence. J Mol Biol (2000) 22.77
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MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. Plant J (2004) 15.51
RNA-Seq gene expression estimation with read mapping uncertainty. Bioinformatics (2009) 10.74
WoLF PSORT: protein localization predictor. Nucleic Acids Res (2007) 10.14
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Further studies on a new pathway of photosynthetic carbon dioxide fixation in sugar-cane and its occurrence in other plant species. Biochem J (1967) 6.29
Ensembl BioMarts: a hub for data retrieval across taxonomic space. Database (Oxford) (2011) 6.04
The developmental dynamics of the maize leaf transcriptome. Nat Genet (2010) 4.02
The origins of C4 grasslands: integrating evolutionary and ecosystem science. Science (2010) 3.28
Reference genome sequence of the model plant Setaria. Nat Biotechnol (2012) 3.21
PlnTFDB: an integrative plant transcription factor database. BMC Bioinformatics (2007) 3.01
Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential. Nat Biotechnol (2012) 2.82
GLK transcription factors coordinate expression of the photosynthetic apparatus in Arabidopsis. Plant Cell (2009) 2.35
The C(4) plant lineages of planet Earth. J Exp Bot (2011) 2.28
Functional differentiation of bundle sheath and mesophyll maize chloroplasts determined by comparative proteomics. Plant Cell (2005) 1.73
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A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites. Plant Cell (2009) 1.71
ATTED-II updates: condition-specific gene coexpression to extend coexpression analyses and applications to a broad range of flowering plants. Plant Cell Physiol (2011) 1.67
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Genome-wide analysis of syntenic gene deletion in the grasses. Genome Biol Evol (2012) 1.36
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A plastid terminal oxidase associated with carotenoid desaturation during chromoplast differentiation. Plant Physiol (2000) 1.34
Blue light-induced transcription of plastid-encoded psbD gene is mediated by a nuclear-encoded transcription initiation factor, AtSig5. Proc Natl Acad Sci U S A (2004) 1.25
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Evolution of the C(4) photosynthetic mechanism: are there really three C(4) acid decarboxylation types? J Exp Bot (2011) 1.23
Characterizing regulatory and functional differentiation between maize mesophyll and bundle sheath cells by transcriptomic analysis. Plant Physiol (2012) 1.18
Circadian control of chloroplast transcription by a nuclear-encoded timing signal. Science (2013) 1.16
Independent and parallel recruitment of preexisting mechanisms underlying C₄ photosynthesis. Science (2011) 1.15
Phenotypic landscape inference reveals multiple evolutionary paths to C4 photosynthesis. Elife (2013) 1.14
The role of proteins in C(3) plants prior to their recruitment into the C(4) pathway. J Exp Bot (2011) 1.08
Sigma factor-mediated plastid retrograde signals control nuclear gene expression. Plant J (2012) 1.07
Differential use of two cyclic electron flows around photosystem I for driving CO2-concentration mechanism in C4 photosynthesis. Proc Natl Acad Sci U S A (2005) 1.07
Photomorphogenic responses in maize seedling development. Plant Physiol (2003) 1.07
Nucleus-encoded plastid sigma factor SIG3 transcribes specifically the psbN gene in plastids. Nucleic Acids Res (2006) 1.06
An RNA recognition motif-containing protein is required for plastid RNA editing in Arabidopsis and maize. Proc Natl Acad Sci U S A (2013) 1.05
Evolution of GOLDEN2-LIKE gene function in C(3) and C (4) plants. Planta (2012) 0.97
A functional component of the transcriptionally active chromosome complex, Arabidopsis pTAC14, interacts with pTAC12/HEMERA and regulates plastid gene expression. Plant Physiol (2011) 0.95
Arabidopsis CSP41 proteins form multimeric complexes that bind and stabilize distinct plastid transcripts. J Exp Bot (2011) 0.95
Regulation and roles of phosphoenolpyruvate carboxykinase in plants. Arch Biochem Biophys (2003) 0.90
Post-transcriptional control of chloroplast gene expression. Gene Regul Syst Bio (2009) 0.89
Evolutionary rewiring: a modified prokaryotic gene-regulatory pathway in chloroplasts. Philos Trans R Soc Lond B Biol Sci (2013) 0.89
Parallel recruitment of multiple genes into c4 photosynthesis. Genome Biol Evol (2013) 0.88
A Common histone modification code on C4 genes in maize and its conservation in Sorghum and Setaria italica. Plant Physiol (2013) 0.86
Inter-species variation in the oligomeric states of the higher plant Calvin cycle enzymes glyceraldehyde-3-phosphate dehydrogenase and phosphoribulokinase. J Exp Bot (2011) 0.84
Leaf rolling allows quantification of mRNA abundance in mesophyll cells of sorghum. J Exp Bot (2012) 0.79
Plant circadian clocks increase photosynthesis, growth, survival, and competitive advantage. Science (2005) 6.92
An mRNA blueprint for C4 photosynthesis derived from comparative transcriptomics of closely related C3 and C4 species. Plant Physiol (2010) 1.87
Evaluating methods for isolating total RNA and predicting the success of sequencing phylogenetically diverse plant transcriptomes. PLoS One (2012) 1.82
The regulation of gene expression required for C4 photosynthesis. Annu Rev Plant Biol (2010) 1.51
Integrating C4 photosynthesis into C3 crops to increase yield potential. Curr Opin Biotechnol (2012) 1.32
The future of C4 research--maize, Flaveria or Cleome? Trends Plant Sci (2005) 1.17
Cleome, a genus closely related to Arabidopsis, contains species spanning a developmental progression from C(3) to C(4) photosynthesis. Plant J (2007) 1.16
Independent and parallel recruitment of preexisting mechanisms underlying C₄ photosynthesis. Science (2011) 1.15
Phenotypic landscape inference reveals multiple evolutionary paths to C4 photosynthesis. Elife (2013) 1.14
C acid decarboxylases required for C photosynthesis are active in the mid-vein of the C species Arabidopsis thaliana, and are important in sugar and amino acid metabolism. Plant J (2009) 1.13
Accumulation of rotavirus VP6 protein in chloroplasts of transplastomic tobacco is limited by protein stability. Plant Biotechnol J (2004) 1.12
The role of proteins in C(3) plants prior to their recruitment into the C(4) pathway. J Exp Bot (2011) 1.08
Spatial control of transgene expression in rice (Oryza sativa L.) using the GAL4 enhancer trapping system. Plant J (2005) 1.04
Cytosolic pyruvate,orthophosphate dikinase functions in nitrogen remobilization during leaf senescence and limits individual seed growth and nitrogen content. Plant J (2010) 1.03
Strategies for engineering a two-celled C(4) photosynthetic pathway into rice. J Exp Bot (2011) 1.02
The pyruvate, orthophosphate dikinase regulatory proteins of Arabidopsis possess a novel, unprecedented Ser/Thr protein kinase primary structure. Plant J (2007) 1.02
Plastid genome structure and loss of photosynthetic ability in the parasitic genus Cuscuta. J Exp Bot (2005) 1.02
Transcript residency on ribosomes reveals a key role for the Arabidopsis thaliana bundle sheath in sulfur and glucosinolate metabolism. Plant J (2014) 0.97
Evolution of GOLDEN2-LIKE gene function in C(3) and C (4) plants. Planta (2012) 0.97
The Tarenaya hassleriana genome provides insight into reproductive trait and genome evolution of crucifers. Plant Cell (2013) 0.95
Multiple Arabidopsis genes primed for recruitment into C₄ photosynthesis. Plant J (2011) 0.95
Molecular evolution of genes recruited into C₄ photosynthesis. Trends Plant Sci (2012) 0.92
Transgenic maize lines with cell-type specific expression of fluorescent proteins in plastids. Plant Biotechnol J (2009) 0.92
The Arabidopsis PPDK gene is transcribed from two promoters to produce differentially expressed transcripts responsible for cytosolic and plastidic proteins. Plant Mol Biol (2006) 0.92
Agrobacterium tumefaciens-mediated transformation of Cleome gynandra L., a C(4) dicotyledon that is closely related to Arabidopsis thaliana. J Exp Bot (2010) 0.91
Comparison of power output by rice (Oryza sativa) and an associated weed (Echinochloa glabrescens) in vascular plant bio-photovoltaic (VP-BPV) systems. Appl Microbiol Biotechnol (2012) 0.83
Light-regulated and cell-specific methylation of the maize PEPC promoter. J Exp Bot (2011) 0.82
Individual maize chromosomes in the C(3) plant oat can increase bundle sheath cell size and vein density. Plant Physiol (2012) 0.82
Expression of green fluorescent protein from bacterial and plastid promoters in tobacco chloroplasts. Transgenic Res (2003) 0.81
Immunogenic tagging of chloroplasts allows their isolation from defined cell types. Plant J (2007) 0.80
Leaf rolling allows quantification of mRNA abundance in mesophyll cells of sorghum. J Exp Bot (2012) 0.79
Correction: Deep Evolutionary Comparison of Gene Expression Identifies Parallel Recruitment of Trans-Factors in Two Independent Origins of C4 Photosynthesis. PLoS Genet (2016) 0.75
Plant metabolism and physiology. Curr Opin Plant Biol (2012) 0.75