Published in Appl Environ Microbiol on March 28, 2014
Microbial metabolic potential for carbon degradation and nutrient (nitrogen and phosphorus) acquisition in an ombrotrophic peatland. Appl Environ Microbiol (2014) 0.82
Relations of microbiome characteristics to edaphic properties of tropical soils from Trinidad. Front Microbiol (2015) 0.80
Metabolic potential of fatty acid oxidation and anaerobic respiration by abundant members of Thaumarchaeota and Thermoplasmata in deep anoxic peat. ISME J (2015) 0.79
Bacterial and fungal communities in a degraded ombrotrophic peatland undergoing natural and managed re-vegetation. PLoS One (2015) 0.77
Next-generation pyrosequencing analysis of microbial biofilm communities on granular activated carbon in treatment of oil sands process-affected water. Appl Environ Microbiol (2015) 0.75
Stability of peatland carbon to rising temperatures. Nat Commun (2016) 0.75
Alpha- and Gammaproteobacterial Methanotrophs Codominate the Active Methane-Oxidizing Communities in an Acidic Boreal Peat Bog. Appl Environ Microbiol (2016) 0.75
Distinct anaerobic bacterial consumers of cellobiose-derived carbon in boreal fens differing in CH4 vs. CO2 production ratio. Appl Environ Microbiol (2016) 0.75
Microbial Community Dynamics in Soil Depth Profiles Over 120,000 Years of Ecosystem Development. Front Microbiol (2017) 0.75
QIIME allows analysis of high-throughput community sequencing data. Nat Methods (2010) 85.34
UCHIME improves sensitivity and speed of chimera detection. Bioinformatics (2011) 29.22
ITS primers with enhanced specificity for basidiomycetes--application to the identification of mycorrhizae and rusts. Mol Ecol (1993) 26.05
Temperature sensitivity of soil carbon decomposition and feedbacks to climate change. Nature (2006) 15.38
Persistence of soil organic matter as an ecosystem property. Nature (2011) 8.08
The effect of permafrost thaw on old carbon release and net carbon exchange from tundra. Nature (2009) 5.29
Stability of organic carbon in deep soil layers controlled by fresh carbon supply. Nature (2007) 4.60
The genome of M. acetivorans reveals extensive metabolic and physiological diversity. Genome Res (2002) 4.58
Examining the global distribution of dominant archaeal populations in soil. ISME J (2010) 4.24
Heterotrophic Archaea dominate sedimentary subsurface ecosystems off Peru. Proc Natl Acad Sci U S A (2006) 3.46
Fast, accurate error-correction of amplicon pyrosequences using Acacia. Nat Methods (2012) 2.77
Microbial contributions to climate change through carbon cycle feedbacks. ISME J (2008) 2.76
Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils. Appl Environ Microbiol (2009) 2.75
Metabolic, phylogenetic, and ecological diversity of the methanogenic archaea. Ann N Y Acad Sci (2008) 2.67
Environmental and stoichiometric controls on microbial carbon-use efficiency in soils. New Phytol (2012) 2.60
Hydrocarbon-degrading bacteria and the bacterial community response in gulf of Mexico beach sands impacted by the deepwater horizon oil spill. Appl Environ Microbiol (2011) 2.47
Isolation and characterization of soil bacteria that define Terriglobus gen. nov., in the phylum Acidobacteria. Appl Environ Microbiol (2007) 2.41
Predominant archaea in marine sediments degrade detrital proteins. Nature (2013) 2.41
Methane emissions from wetlands: biogeochemical, microbial, and modeling perspectives from local to global scales. Glob Chang Biol (2013) 2.30
An enzymic 'latch' on a global carbon store. Nature (2001) 2.27
Preservation of organic matter in marine sediments: controls, mechanisms, and an imbalance in sediment organic carbon budgets? Chem Rev (2007) 2.12
Environmental, genomic and taxonomic perspectives on methanotrophic Verrucomicrobia. Environ Microbiol Rep (2009) 2.06
Phylogenetic analysis and in situ identification of bacteria community composition in an acidic Sphagnum peat bog. Appl Environ Microbiol (2006) 1.99
Biological nitrogen fixation: rates, patterns and ecological controls in terrestrial ecosystems. Philos Trans R Soc Lond B Biol Sci (2013) 1.90
Soil microorganisms mediating phosphorus availability update on microbial phosphorus. Plant Physiol (2011) 1.71
Effect of pH on isolation and distribution of members of subdivision 1 of the phylum Acidobacteria occurring in soil. Appl Environ Microbiol (2006) 1.69
Ecoenzymatic stoichiometry of microbial organic nutrient acquisition in soil and sediment. Nature (2009) 1.35
Sulfate-reducing microorganisms in wetlands - fameless actors in carbon cycling and climate change. Front Microbiol (2012) 1.22
Spatial and temporal dynamics of the microbial community in the Hanford unconfined aquifer. ISME J (2012) 1.12
Effects of season and experimental warming on the bacterial community in a temperate mountain forest soil assessed by 16S rRNA gene pyrosequencing. FEMS Microbiol Ecol (2012) 1.11
Effects of temperature on the diversity and community structure of known methanogenic groups and other archaea in high Arctic peat. ISME J (2007) 1.11
Soil pH regulates the abundance and diversity of Group 1.1c Crenarchaeota. FEMS Microbiol Ecol (2009) 1.09
Cultivating uncultured bacteria from northern wetlands: knowledge gained and remaining gaps. Front Microbiol (2011) 1.09
Microbial community structure and activity linked to contrasting biogeochemical gradients in bog and fen environments of the Glacial Lake Agassiz Peatland. Appl Environ Microbiol (2012) 1.06
Bacterial populations and environmental factors controlling cellulose degradation in an acidic Sphagnum peat. Environ Microbiol (2011) 1.05
Intermediary ecosystem metabolism as a main driver of methanogenesis in acidic wetland soil. Environ Microbiol Rep (2009) 1.04
Pyrosequencing-based assessment of the bacteria diversity in surface and subsurface peat layers of a northern wetland, with focus on poorly studied phyla and candidate divisions. PLoS One (2013) 1.02
Telmatobacter bradus gen. nov., sp. nov., a cellulolytic facultative anaerobe from subdivision 1 of the Acidobacteria, and emended description of Acidobacterium capsulatum Kishimoto et al. 1991. Int J Syst Evol Microbiol (2011) 1.00
Stratification of Archaea in the deep sediments of a freshwater meromictic lake: vertical shift from methanogenic to uncultured archaeal lineages. PLoS One (2012) 0.93
Peatland microbial communities and decomposition processes in the james bay lowlands, Canada. Front Microbiol (2012) 0.90
Microbial metabolic potential for carbon degradation and nutrient (nitrogen and phosphorus) acquisition in an ombrotrophic peatland. Appl Environ Microbiol (2014) 0.82
Activation energy of extracellular enzymes in soils from different biomes. PLoS One (2013) 0.81
Distinct and complex bacterial profiles in human periodontitis and health revealed by 16S pyrosequencing. ISME J (2011) 3.35
GeoChip: a comprehensive microarray for investigating biogeochemical, ecological and environmental processes. ISME J (2007) 3.15
Soil microbial community responses to multiple experimental climate change drivers. Appl Environ Microbiol (2009) 2.92
Microarray-based analysis of subnanogram quantities of microbial community DNAs by using whole-community genome amplification. Appl Environ Microbiol (2006) 2.31
Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes. Environ Microbiol (2011) 2.28
Change in bacterial community structure during in situ biostimulation of subsurface sediment cocontaminated with uranium and nitrate. Appl Environ Microbiol (2004) 2.08
Enumeration and characterization of iron(III)-reducing microbial communities from acidic subsurface sediments contaminated with uranium(VI). Appl Environ Microbiol (2003) 1.98
Distinct microbial communities within the endosphere and rhizosphere of Populus deltoides roots across contrasting soil types. Appl Environ Microbiol (2011) 1.96
Spatial scaling of functional gene diversity across various microbial taxa. Proc Natl Acad Sci U S A (2008) 1.95
Experimental warming shows that decomposition temperature sensitivity increases with soil organic matter recalcitrance. Ecology (2008) 1.74
Benthic exchange and biogeochemical cycling in permeable sediments. Ann Rev Mar Sci (2013) 1.64
Comparative metagenomic and rRNA microbial diversity characterization using archaeal and bacterial synthetic communities. Environ Microbiol (2013) 1.62
Twenty-one genome sequences from Pseudomonas species and 19 genome sequences from diverse bacteria isolated from the rhizosphere and endosphere of Populus deltoides. J Bacteriol (2012) 1.60
Denitrifying bacteria isolated from terrestrial subsurface sediments exposed to mixed-waste contamination. Appl Environ Microbiol (2010) 1.58
Microarray-based analysis of microbial community RNAs by whole-community RNA amplification. Appl Environ Microbiol (2006) 1.49
Host genetic and environmental effects on mouse intestinal microbiota. ISME J (2012) 1.47
The effects of chronic nitrogen fertilization on alpine tundra soil microbial communities: implications for carbon and nitrogen cycling. Environ Microbiol (2008) 1.45
Global transcriptome analysis of the cold shock response of Shewanella oneidensis MR-1 and mutational analysis of its classical cold shock proteins. J Bacteriol (2006) 1.40
Probing regulon of ArcA in Shewanella oneidensis MR-1 by integrated genomic analyses. BMC Genomics (2008) 1.38
Microbial community structure of hydrothermal deposits from geochemically different vent fields along the Mid-Atlantic Ridge. Environ Microbiol (2011) 1.38
The electron transfer system of syntrophically grown Desulfovibrio vulgaris. J Bacteriol (2009) 1.35
Improvement of oligonucleotide probe design criteria for functional gene microarrays in environmental applications. Appl Environ Microbiol (2006) 1.28
Microbial community diversity associated with carbon and nitrogen cycling in permeable shelf sediments. Appl Environ Microbiol (2006) 1.27
Off-pump coronary artery bypass disproportionately benefits high-risk patients. Ann Thorac Surg (2009) 1.26
Spatial structure and activity of sedimentary microbial communities underlying a Beggiatoa spp. mat in a Gulf of Mexico hydrocarbon seep. PLoS One (2010) 1.26
Sulfate-reducing bacterium Desulfovibrio desulfuricans ND132 as a model for understanding bacterial mercury methylation. Appl Environ Microbiol (2011) 1.26
Labile soil carbon inputs mediate the soil microbial community composition and plant residue decomposition rates. New Phytol (2010) 1.25
Sequencing of multiple clostridial genomes related to biomass conversion and biofuel production. J Bacteriol (2010) 1.25
Metabolically active microbial communities in uranium-contaminated subsurface sediments. FEMS Microbiol Ecol (2007) 1.21
Mercury and other heavy metals influence bacterial community structure in contaminated Tennessee streams. Appl Environ Microbiol (2010) 1.17
Denitrifying bacteria from the genus Rhodanobacter dominate bacterial communities in the highly contaminated subsurface of a nuclear legacy waste site. Appl Environ Microbiol (2011) 1.17
Combined inactivation of the Clostridium cellulolyticum lactate and malate dehydrogenase genes substantially increases ethanol yield from cellulose and switchgrass fermentations. Biotechnol Biofuels (2012) 1.16
A limited microbial consortium is responsible for extended bioreduction of uranium in a contaminated aquifer. Appl Environ Microbiol (2011) 1.14
Quantification of ammonia-oxidizing bacteria and factors controlling nitrification in salt marsh sediments. Appl Environ Microbiol (2005) 1.14
Fruit and soil quality of organic and conventional strawberry agroecosystems. PLoS One (2010) 1.13
Physiological roles of ArcA, Crp, and EtrA and their interactive control on aerobic and anaerobic respiration in Shewanella oneidensis. PLoS One (2010) 1.13
Reduction of nitrate in Shewanella oneidensis depends on atypical NAP and NRF systems with NapB as a preferred electron transport protein from CymA to NapA. ISME J (2009) 1.13
Clostridium thermocellum ATCC27405 transcriptomic, metabolomic and proteomic profiles after ethanol stress. BMC Genomics (2012) 1.13
Aerobic denitrification in permeable Wadden Sea sediments. ISME J (2009) 1.12
Predictors of cardiovascular events in patients with type 2 diabetic nephropathy and hypertension: a case for albuminuria. Kidney Int Suppl (2004) 1.12
A multifactor analysis of fungal and bacterial community structure in the root microbiome of mature Populus deltoides trees. PLoS One (2013) 1.11
Identification of sulfate-reducing bacteria in methylmercury-contaminated mine tailings by analysis of SSU rRNA genes. FEMS Microbiol Ecol (2009) 1.07
Functional diversity and electron donor dependence of microbial populations capable of U(VI) reduction in radionuclide-contaminated subsurface sediments. Appl Environ Microbiol (2008) 1.07
Draft genome sequence of Rhizobium sp. strain PDO1-076, a bacterium isolated from Populus deltoides. J Bacteriol (2012) 1.06
Effects of nitrate on the stability of uranium in a bioreduced region of the subsurface. Environ Sci Technol (2010) 1.06
Pseudomonas fluorescens induces strain-dependent and strain-independent host plant responses in defense networks, primary metabolism, photosynthesis, and fitness. Mol Plant Microbe Interact (2012) 1.06
Response of the soil microbial community to changes in precipitation in a semiarid ecosystem. Appl Environ Microbiol (2012) 1.06
Tracking anthropogenic inputs using caffeine, indicator bacteria, and nutrients in rural freshwater and urban marine systems. Environ Sci Technol (2006) 1.05
Changes in peat chemistry associated with permafrost thaw increase greenhouse gas production. Proc Natl Acad Sci U S A (2014) 1.05
Photoautotrophic symbiont and geography are major factors affecting highly structured and diverse bacterial communities in the lichen microbiome. Environ Microbiol (2011) 1.02
Establishment and metabolic analysis of a model microbial community for understanding trophic and electron accepting interactions of subsurface anaerobic environments. BMC Microbiol (2010) 1.01
Characterization of nitrifying, denitrifying, and overall bacterial communities in permeable marine sediments of the northeastern Gulf of Mexico. Appl Environ Microbiol (2008) 1.01
Microbial community succession during lactate amendment and electron acceptor limitation reveals a predominance of metal-reducing Pelosinus spp. Appl Environ Microbiol (2012) 1.01
Links between archaeal community structure, vegetation type and methanogenic pathway in Alaskan peatlands. FEMS Microbiol Ecol (2007) 0.99
Responses of soil cellulolytic fungal communities to elevated atmospheric CO₂ are complex and variable across five ecosystems. Environ Microbiol (2011) 0.99
Genome sequences for three denitrifying bacterial strains isolated from a uranium- and nitrate-contaminated subsurface environment. Genome Announc (2013) 0.99
Effects of soil type and farm management on soil ecological functional genes and microbial activities. ISME J (2010) 0.98
Towards a holistic understanding of the beneficial interactions across the Populus microbiome. New Phytol (2014) 0.96
Impact of biostimulated redox processes on metal dynamics in an iron-rich creek soil of a former uranium mining area. Environ Sci Technol (2010) 0.96
Draft genome sequences for two metal-reducing Pelosinus fermentans strains isolated from a Cr(VI)-contaminated site and for type strain R7. J Bacteriol (2012) 0.95
Microbial links between sulfate reduction and metal retention in uranium- and heavy metal-contaminated soil. Appl Environ Microbiol (2010) 0.95
Draft genome sequences for oil-degrading bacterial strains from beach sands impacted by the deepwater horizon oil spill. Genome Announc (2013) 0.95
Common bacterial responses in six ecosystems exposed to 10 years of elevated atmospheric carbon dioxide. Environ Microbiol (2012) 0.94
Comment on "A persistent oxygen anomaly reveals the fate of spilled methane in the deep Gulf of Mexico". Science (2011) 0.93
Metal reduction and iron biomineralization by a psychrotolerant Fe(III)-reducing bacterium, Shewanella sp. strain PV-4. Appl Environ Microbiol (2006) 0.92
Microbial cultivation and the role of microbial resource centers in the omics era. Appl Microbiol Biotechnol (2012) 0.92
Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants. Mol Ecol (2014) 0.91
Efficiency of gene silencing in Arabidopsis: direct inverted repeats vs. transitive RNAi vectors. Plant Biotechnol J (2007) 0.90
Measuring temporal variability in pore-fluid chemistry to assess gas hydrate stability: development of a continuous pore-fluid array. Environ Sci Technol (2008) 0.90
Impact of elevated nitrate on sulfate-reducing bacteria: a comparative study of Desulfovibrio vulgaris. ISME J (2010) 0.89
Afforestation alters the composition of functional genes in soil and biogeochemical processes in South American grasslands. Appl Environ Microbiol (2009) 0.88
pH gradient-induced heterogeneity of Fe(III)-reducing microorganisms in coal mining-associated lake sediments. Appl Environ Microbiol (2007) 0.88
The society of thoracic surgeons 30-day predicted risk of mortality score also predicts long-term survival. Ann Thorac Surg (2011) 0.88
Fate of effluent-borne contaminants beneath septic tank drainfields overlying a Karst aquifer. J Environ Qual (2010) 0.87
Microbial community changes in response to ethanol or methanol amendments for U(VI) reduction. Appl Environ Microbiol (2010) 0.87
Seasonal greenhouse gas emissions (methane, carbon dioxide, nitrous oxide) from engineered landfills: daily, intermediate, and final California cover soils. J Environ Qual (2011) 0.87
Geobacter daltonii sp. nov., an Fe(III)- and uranium(VI)-reducing bacterium isolated from a shallow subsurface exposed to mixed heavy metal and hydrocarbon contamination. Int J Syst Evol Microbiol (2009) 0.87
Temporal variability in (13)C of respired CO(2) in a pine and a hardwood forest subject to similar climatic conditions. Oecologia (2004) 0.87
Characterization of archaeal community in contaminated and uncontaminated surface stream sediments. Microb Ecol (2010) 0.86
Rhodanobacter denitrificans sp. nov., isolated from nitrate-rich zones of a contaminated aquifer. Int J Syst Evol Microbiol (2011) 0.84
Influence of acidification on the optical properties and molecular composition of dissolved organic matter. Anal Chim Acta (2011) 0.84
Comparison of dialysis and solid-phase extraction for isolation and concentration of dissolved organic matter prior to Fourier transform ion cyclotron resonance mass spectrometry. Anal Bioanal Chem (2012) 0.84
Diurnal variation of the delta 13C of pine needle respired CO2 evolved in darkness. Plant Cell Environ (2006) 0.83
Maturation of speech and language functional neuroanatomy in pediatric normal controls. J Speech Lang Hear Res (2006) 0.83
Firing range soils yield a diverse array of fungal isolates capable of organic acid production and Pb mineral solubilization. Appl Environ Microbiol (2012) 0.82
Does the (13)C of foliage-respired CO(2) and biochemical pools reflect the (13)C of recently assimilated carbon? Plant Cell Environ (2009) 0.82
Donor-dependent extent of uranium reduction for bioremediation of contaminated sediment microcosms. J Environ Qual (2009) 0.82
Microbial metabolic potential for carbon degradation and nutrient (nitrogen and phosphorus) acquisition in an ombrotrophic peatland. Appl Environ Microbiol (2014) 0.82
Medication exposure in pregnancy risk evaluation program: the prevalence of asthma medication use during pregnancy. Matern Child Health J (2013) 0.82
Substrate limitation for methanogenesis in hypersaline environments. Astrobiology (2012) 0.82