Identification of pummelo cultivars by using a panel of 25 selected SNPs and 12 DNA segments.

PubWeight™: 0.86‹?›

🔗 View Article (PMC 3986212)

Published in PLoS One on April 14, 2014

Authors

Bo Wu1, Guang-yan Zhong2, Jian-qiang Yue3, Run-ting Yang4, Chong Li4, Yue-jia Li5, Yun Zhong5, Xuan Wang4, Bo Jiang5, Ji-wu Zeng5, Li Zhang5, Shu-tang Yan4, Xue-jun Bei4, Dong-guo Zhou3

Author Affiliations

1: College of Horticulture and Landscape Architecture, Southwest University, Chongqing, China; Key Laboratory of South Subtropical Fruit Biology and Genetic Resource Utilization, Ministry of Agriculture, Guangzhou, China; Institution of Fruit Tree Research, Guangdong Academy of Agricultural Sciences, Guangzhou, China.
2: Key Laboratory of South Subtropical Fruit Biology and Genetic Resource Utilization, Ministry of Agriculture, Guangzhou, China.
3: Institute of Tropical and Subtropical Cash Crops, Yunnan Academy of Agricultural Science, Dehong, Yunnan, China.
4: College of Horticulture and Landscape Architecture, Southwest University, Chongqing, China.
5: Key Laboratory of South Subtropical Fruit Biology and Genetic Resource Utilization, Ministry of Agriculture, Guangzhou, China; Institution of Fruit Tree Research, Guangdong Academy of Agricultural Sciences, Guangzhou, China.

Articles cited by this

Inference of population structure using multilocus genotype data. Genetics (2000) 147.76

Clustal W and Clustal X version 2.0. Bioinformatics (2007) 126.47

GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research--an update. Bioinformatics (2012) 65.14

Biological identifications through DNA barcodes. Proc Biol Sci (2003) 54.14

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics (2009) 44.48

PowerMarker: an integrated analysis environment for genetic marker analysis. Bioinformatics (2005) 15.95

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proc Natl Acad Sci U S A (2012) 10.22

Structure of linkage disequilibrium and phenotypic associations in the maize genome. Proc Natl Acad Sci U S A (2001) 7.57

Ascertainment bias in studies of human genome-wide polymorphism. Genome Res (2005) 6.63

Estimation of evolutionary distance between nucleotide sequences. Mol Biol Evol (1984) 5.39

Genotyping errors: causes, consequences and solutions. Nat Rev Genet (2005) 5.00

Applications of single nucleotide polymorphisms in crop genetics. Curr Opin Plant Biol (2002) 4.87

Genotyping of single-nucleotide polymorphisms by high-resolution melting of small amplicons. Clin Chem (2004) 3.99

Estimating the probability of identity among genotypes in natural populations: cautions and guidelines. Mol Ecol (2001) 3.23

Uniparental inheritance of mitochondrial and chloroplast genes: mechanisms and evolution. Proc Natl Acad Sci U S A (1995) 3.20

The draft genome of sweet orange (Citrus sinensis). Nat Genet (2012) 2.81

Assessing genetic diversity and population structure in a citrus germplasm collection utilizing simple sequence repeat markers (SSRs). Theor Appl Genet (2006) 2.49

Genetics and genomics of core short tandem repeat loci used in human identity testing. J Forensic Sci (2006) 2.36

Comparisons of three probability formulae for parentage exclusion. Anim Genet (1997) 2.27

Simultaneous mutation scanning and genotyping by high-resolution DNA melting analysis. Nat Protoc (2007) 2.16

A practical guide to methods of parentage analysis. Mol Ecol Resour (2009) 1.89

Empirical comparison of Simple Sequence Repeats and single nucleotide polymorphisms in assessment of maize diversity and relatedness. PLoS One (2007) 1.80

SNPs for a universal individual identification panel. Hum Genet (2010) 1.42

A set of EST-SNPs for map saturation and cultivar identification in melon. BMC Plant Biol (2009) 1.41

A comparison of simple sequence repeat and single nucleotide polymorphism marker technologies for the genotypic analysis of maize (Zea mays L.). Theor Appl Genet (2007) 1.34

SNP mining in C. clementina BAC end sequences; transferability in the Citrus genus (Rutaceae), phylogenetic inferences and perspectives for genetic mapping. BMC Genomics (2012) 1.29

Effectiveness of microsatellite and SNP markers for parentage and identity analysis in species with low genetic diversity: the case of European bison. Heredity (Edinb) (2009) 1.22

Base-pair neutral homozygotes can be discriminated by calibrated high-resolution melting of small amplicons. Nucleic Acids Res (2008) 1.19

SNP ascertainment bias in population genetic analyses: why it is important, and how to correct it. Bioessays (2013) 1.18

Detection and characterization of SNPs useful for identity control and parentage testing in major European dairy breeds. Anim Genet (2004) 1.14

DNA barcoding as an effective tool in improving a digital plant identification system: a case study for the area of Mt. Valerio, Trieste (NE Italy). PLoS One (2012) 1.07

A 48 SNP set for grapevine cultivar identification. BMC Plant Biol (2011) 1.03

BARCSoySNP23: a panel of 23 selected SNPs for soybean cultivar identification. Theor Appl Genet (2007) 1.01

The diversification of Citrus clementina Hort. ex Tan., a vegetatively propagated crop species. Mol Phylogenet Evol (2001) 0.96

Selection of twenty-four highly informative SNP markers for human identification and paternity analysis in Koreans. Forensic Sci Int (2005) 0.96

High-resolution melting genotyping of Enterococcus faecium based on multilocus sequence typing derived single nucleotide polymorphisms. PLoS One (2011) 0.92

High-resolution melting analysis (HRMA): a highly sensitive inexpensive genotyping alternative for population studies. Mol Ecol Resour (2009) 0.92

SNP-based markers for discriminating olive (Olea europaea L.) cultivars. Genome (2006) 0.90

High resolution melting analysis is a more sensitive and effective alternative to gel-based platforms in analysis of SSR--an example in citrus. PLoS One (2012) 0.83

Using blocks of linked single nucleotide polymorphisms as highly polymorphic genetic markers for parentage analysis. Mol Ecol Resour (2008) 0.82

Plant variety and cultivar identification: advances and prospects. Crit Rev Biotechnol (2012) 0.82